BAC Information

Click to search

BAC

Clone NameB6Ng01-284O16
Chromosome1 (Build37)
Map Location 191,160,828 - 191,299,854
singlet/doubletdoublet
Overlap geneKcnk2, LOC100039307
Upstream geneUsh2a, Kctd3, LOC100042424
Downstream geneCenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284O16.bB6Ng01-284O16.g
ACCGA083501GA083502
length6751,029
definitionB6Ng01-284O16.b B6Ng01-284O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(191,160,828 - 191,161,502)(191,299,291 - 191,299,854)
sequence
gaattctgtctgtggacggtattgatgagtctaaagttcatgacttttcc
tgtgtgtctctgtagggacaccacattaactgaagtgccatggatgcaga
tacctgccatgttctcaaatcctggcccagaacaagtctttgtcattgcg
ctctgtgtctgtctcacctctgccgaccttgttggaaggttggggtgctt
gactgaacacatcattatagaattaatggaaatcacacatatatctaaca
cagaggcgttagaggccctcacctgccttgtggttcctcggcctccctca
taccctcataaacacagcttggaaccaggtgaccagtaatcataatgatc
agggttccaggacagttttattatacctgacgctatcctactatctgacc
gcctccttctcacaaacagcaggatggagccaccacccactctcgctctt
tctgcctcccacactgtaagaaggtaaagctccctagagagcgaagcctc
ctggttctgatgccagatcagattctgtaggctggaacctcaccctgatg
atgtcatcaggggaatcgcccggacttactctgtctgatttcccaagtcc
taatgctgtgacaggactgtccagtagacccacttgtggggcttttagag
ttaaagaaatggggggggggggtta

gaattctcttgggaccagccatcagagcaataattgggaccaactatatc
ttagctaccaagttatcatttgacagggatggtgaatgctaaccagactt
gtgcatttcagaagcatggatgttagggaagggataactacacatttcag
aactcggagggaaaaccctgggagctgcacaaggcagtaataatgatcag
tcagctcattccgctggcttggtcccacattgcaataaccaaatagatct
gccatccttgagatttgataacacaatacccagtaacctggtaaaaacaa
gacacaatgcttatagttaaccaatcagatttatatatcaataaattctc
aatacacaagatgccaatacaataatttcagagccaattgataatgataa
cagctgcccaccttgattagacaaatcattccaatattctaacctgtatg
atatcataacaacctggggctggtcatagccactctgattcacatttgcc
accatcttcttttctccccgataccccaacatgctctctgtctctgcaac
tcttagctctgcctcccttttccctgtccaatcacaggcctcccactgcc
ctcatgtaatcaaacagggaaaatcctgtgacacagcctcttcctcctta
cccccgaccccatgctggctaactttacgtcaacttgacacaagctagaa
tcactggaaaggagggagccttaattgagaaaatgactcaataagatctg
accataggcaagcatacagggtattttcttaatcagtaattgatggggaa
gggaccagcctgttgtggaggtggtcctgggttctataaggaagcagctg
agcaagtaaagccatggagagcaagccattaagcagcaccctttccatgg
tctctgcttcagctcctgcccttaagttcctgccctgtttgagttcctga
cttcctttaaagatgatatgggaactataagctgaataaaatccttttct
ctcaactgcatttttgggtcatagtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191160828_191161502
seq2: B6Ng01-284O16.b_49_723

seq1  GAATTCTGTCTGTGGACGGTATTGATGAGTCTAAAGTTCATGACTTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGTGGACGGTATTGATGAGTCTAAAGTTCATGACTTTTCC  50

seq1  TGTGTGTCTCTGTAGGGACACCACATTAACTGAAGTGCCATGGATGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTCTGTAGGGACACCACATTAACTGAAGTGCCATGGATGCAGA  100

seq1  TACCTGCCATGTTCTCAAATCCTGGCCCAGAACAAGTCTTTGTCATTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCCATGTTCTCAAATCCTGGCCCAGAACAAGTCTTTGTCATTGCG  150

seq1  CTCTGTGTCTGTCTCACCTCTGCCGACCTTGTTGGAAGGTTGGGGTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCTGTCTCACCTCTGCCGACCTTGTTGGAAGGTTGGGGTGCTT  200

seq1  GACTGAACACATCATTATAGAATTAATGGAAATCACACATATATCTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAACACATCATTATAGAATTAATGGAAATCACACATATATCTAACA  250

seq1  CAGAGGCGTTAGAGGCCCTCACCTGCCTTGTGGTTCCTCGGCCTCCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCGTTAGAGGCCCTCACCTGCCTTGTGGTTCCTCGGCCTCCCTCA  300

seq1  TACCCTCATAAACACAGCTTGGAACCAGGTGACCAGTAATCATAATGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCATAAACACAGCTTGGAACCAGGTGACCAGTAATCATAATGATC  350

seq1  AGGGTTCCAGGACAGTTTTATTATACCTGACGCTATCCTACTATCTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCCAGGACAGTTTTATTATACCTGACGCTATCCTACTATCTGACC  400

seq1  GCCTCCTTCTCACAAACAGCAGGATGGAGCCACCACCCACTCTCGCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTCTCACAAACAGCAGGATGGAGCCACCACCCACTCTCGCTCTT  450

seq1  TCTGCCTCCCACACTGTAAGAAGGTAAAGCTCCCTAGAGAGCGAAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCACACTGTAAGAAGGTAAAGCTCCCTAGAGAGCGAAGCCTC  500

seq1  CTGGTTCTGATGCCAGATCAGATTCTGTAGGCTGGAACCTCACCCTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTGATGCCAGATCAGATTCTGTAGGCTGGAACCTCACCCTGATG  550

seq1  ATGTCATCAGGGGAATCGCCCGGACTTACTCTGTCTGATTTCCCAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCAGGGGAATCGCCCGGACTTACTCTGTCTGATTTCCCAAGTCC  600

seq1  TAATGCTGTGACAGGACTGTCCAGTAGACCCACTTGTGGGGCTTTTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGTGACAGGACTGTCCAGTAGACCCACTTGTGGGGCTTTTAGAG  650

seq1  TTAAAGAAATGGGGGGGGGGGGTTA  675
      |||||||||||||||||||||||||
seq2  TTAAAGAAATGGGGGGGGGGGGTTA  675


seq1: chr1_191299291_191299854
seq2: B6Ng01-284O16.g_68_631 (reverse)

seq1  AGGCAGAGCTAAGAGTTGCAGAGACAGAGAGCATGTTGGGGTATCGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCTAAGAGTTGCAGAGACAGAGAGCATGTTGGGGTATCGGGGA  50

seq1  GAAAAGAAGATGGTGGCAAATGTGAATCAGAGTGGCTATGACCAGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGATGGTGGCAAATGTGAATCAGAGTGGCTATGACCAGCCCCA  100

seq1  GGTTGTTATGATATCATACAGGTTAGAATATTGGAATGATTTGTCTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTATGATATCATACAGGTTAGAATATTGGAATGATTTGTCTAATC  150

seq1  AAGGTGGGCAGCTGTTATCATTATCAATTGGCTCTGAAATTATTGTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGCAGCTGTTATCATTATCAATTGGCTCTGAAATTATTGTATTG  200

seq1  GCATCTTGTGTATTGAGAATTTATTGATATATAAATCTGATTGGTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGTGTATTGAGAATTTATTGATATATAAATCTGATTGGTTAACT  250

seq1  ATAAGCATTGTGTCTTGTTTTTACCAGGTTACTGGGTATTGTGTTATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATTGTGTCTTGTTTTTACCAGGTTACTGGGTATTGTGTTATCAA  300

seq1  ATCTCAAGGATGGCAGATCTATTTGGTTATTGCAATGTGGGACCAAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAGGATGGCAGATCTATTTGGTTATTGCAATGTGGGACCAAGCCA  350

seq1  GCGGAATGAGCTGACTGATCATTATTACTGCCTTGTGCAGCTCCCAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAATGAGCTGACTGATCATTATTACTGCCTTGTGCAGCTCCCAGGGT  400

seq1  TTTCCCTCCGAGTTCTGAAATGTGTAGTTATCCCTTCCCTAACATCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCCGAGTTCTGAAATGTGTAGTTATCCCTTCCCTAACATCCATG  450

seq1  CTTCTGAAATGCACAAGTCTGGTTAGCATTCACCATCCCTGTCAAATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAATGCACAAGTCTGGTTAGCATTCACCATCCCTGTCAAATGAT  500

seq1  AACTTGGTAGCTAAGATATAGTTGGTCCCAATTATTGCTCTGATGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTAGCTAAGATATAGTTGGTCCCAATTATTGCTCTGATGGCTGG  550

seq1  TCCCAAGAGAATTC  564
      ||||||||||||||
seq2  TCCCAAGAGAATTC  564


| Home | SequenceCutter | Blast | Download |