BAC Information

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BAC

Clone NameB6Ng01-285M05
Chromosome1 (Build37)
Map Location 42,601,186 - 42,776,863
singlet/doubletdoublet
Overlap gene2610017I09Rik, Pou3f3
Upstream geneLOC383634, LOC666582
Downstream geneMrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285M05.bB6Ng01-285M05.g
ACCGA084129GA084130
length1,0821,133
definitionB6Ng01-285M05.b B6Ng01-285M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,601,186 - 42,602,256)(42,775,738 - 42,776,863)
sequence
gaattctatggatgagcttaaattcctaactttcaggcttatgcaaattt
tttgagtttataatatagtttcaatatttctctcttccctttcctccctc
taaaccctccaacatgcccggcttcaaacactctccttcaaatcaatggc
cttttttgttcattgttattgaatgtacacacacacgcacacacgcacac
acacatagatatacacatacacatacacatacatagcctgctcgggctat
aaattacctatatgtttgtaccatctttcaaatttatatttgctttaatt
tcttcctcttcttttctgtgctttatctttttatgatggaaaatactaaa
aaaaatcagcatctaaccaccggtgcatccagggtgggggtggcatgact
gtagacaggggcagcttgaatctcagcatctgatatcgctctacacatgg
gaacaatttttatgacaaaataaaacctaaagatttaggttttttgtaaa
tatacatcttcacatatcttggaaggaggaaattttgacttttacctcat
atattttgaaatatttaaccctttctcagaattactccctgtggcatgag
ccctggcatgtaatgcattgcttgtacaaagaacagggtgcaaatctttc
tgttacaagcatccattacaaaggaaggaaggaatctttatctgctaatc
attggatattgccccagtacacaataggcactcaatagatacctgttgaa
aaagaaatgagtgaatttaaatatctctaaaatcacgtagaaagggaagc
ctgagagcctgagttaactccaagaactcacatggcagaaggaaaggaaa
gaaccgattcctataattgtgctctaacctccacactcaggttgtagtct
ctctctctctctctctctctctctctctctctctcacacacacacacaca
tacacacacacatacacacaatttattaatgtaaaagagtcaaataatat
aaagccatggtttttatttccattgtgacagccatatcttttaatattta
aaacactaggccaacacctctggaccccacac
gaattctaagtgtctgatggccaggtttatcatgaaaacacagtacagaa
tctgagtattgagctccctttgagaatatgcaccaggtgggaatctattg
agtcacatcatgcagcctatgatctatgcagacaggaagtgtatctaggg
atgtcagtggtgtaccatgggtattccccacatcacagtaaagacattgg
caccagggagaaagaatccacttagttaggaataattcatcctcatttcc
agaccaagcccgacaattgaattccacctctgaaatttgggtaaattgca
tgattttgtttccactgtgaccttttagtggagctgatggatgctgggtc
tgctaatacagctggcctgtctttataccaagctgtccttcttaccagtc
agctcagccaggtgaccaatgactaaccagacactacctggtgaatattt
tctggtttcctgttcccagatgtttttcactgcctgccaggtgggaacag
agcactgtcatttgccacttgtgttttgtctcatcaggacagaatgtcac
ccttctaaggcagggcaactgtacaacttcggaaagacttggtgaaagta
atggaacctagagactgagtccccccagctaagctccttccagtctctgc
acactgtagctagaatggagcctgtaaccatgggtggcattcatcccatt
tactgtctatgggcatttcctctgctggccacgcagaaaagattccaaaa
ggaagtatacagtcctggctgtggtccctgggtttatgagaaggacattt
tgcagggtaactgtgtgttaaggatccacttttggctatctcctctggca
gggtcagttggagggagacctaataaactcagtaaacagagagaagagag
atgcttatacttaataagccattgcaaatggaaaaagtaagctcctaccc
gacatgattctctctagaagcaaatggcttggatccaagttactgcagtg
ggctttttaagtctcggggtcccagggcctccaggagctactcttttctc
ctggagcagcctttatgaagggagagaatgaacttcctgtgagcctgcca
caggcccaggccatcctcctttgtttaagttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42601186_42602256
seq2: B6Ng01-285M05.b_44_1125

seq1  GAATTCTATGGATGAGCTTAAATTCCTAACTTTCAGGCTTATGCAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGATGAGCTTAAATTCCTAACTTTCAGGCTTATGCAAATTT  50

seq1  TTTGAGTTTATAATATAGTTTCAATATTTCTCTCTTCCCTTTCCTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTATAATATAGTTTCAATATTTCTCTCTTCCCTTTCCTCCCTC  100

seq1  TAAACCCTCCAACATGCCCGGCTTCAAACACTCTCCTTCAAATCAATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTCCAACATGCCCGGCTTCAAACACTCTCCTTCAAATCAATGGC  150

seq1  CTTTTTTGTTCATTGTTATTGAATGTACACACACACGCACACACGCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGTTCATTGTTATTGAATGTACACACACACGCACACACGCACAC  200

seq1  ACACATAGATATACACATACACATACACATACATAGCCTGCTCGGGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGATATACACATACACATACACATACATAGCCTGCTCGGGCTAT  250

seq1  AAATTACCTATATGTTTGTACCATCTTTCAAATTTATATTTGCTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCTATATGTTTGTACCATCTTTCAAATTTATATTTGCTTTAATT  300

seq1  TCTTCCTCTTCTTTTCTGTGCTTTATCTTTTTATGATGGAAAATACTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTTCTTTTCTGTGCTTTATCTTTTTATGATGGAAAATACTAAA  350

seq1  AAAAATCAGCATCTAACCACCGGTGCATCCAGGGTGGGGGTGGCATGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAGCATCTAACCACCGGTGCATCCAGGGTGGGGGTGGCATGACT  400

seq1  GTAGACAGGGGCAGCTTGAATCTCAGCATCTGATATCGCTCTACACATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGGGGCAGCTTGAATCTCAGCATCTGATATCGCTCTACACATGG  450

seq1  GAACAATTTTTATGACAAAATAAAACCTAAAGATTTAGGTTTTTTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTTTTATGACAAAATAAAACCTAAAGATTTAGGTTTTTTGTAAA  500

seq1  TATACATCTTCACATATCTTGGAAGGAGGAAATTTTGACTTTTACCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCTTCACATATCTTGGAAGGAGGAAATTTTGACTTTTACCTCAT  550

seq1  ATATTTTGAAATATTTAACCCTTTCTCAGAATTACTCCCTGTGGCATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGAAATATTTAACCCTTTCTCAGAATTACTCCCTGTGGCATGAG  600

seq1  CCCTGGCATGTAATGCATTGCTTGTACAAAGAACAGGGTGCAAATCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCATGTAATGCATTGCTTGTACAAAGAACAGGGTGCAAATCTTTC  650

seq1  TGTTACAAGCATCCATTACAAAGGAAGGAAGGAATCTTTATCTGCTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAAGCATCCATTACAAAGGAAGGAAGGAATCTTTATCTGCTAATC  700

seq1  ATTGGATATTGCCCCAGTACACAATAGGCACTCAATAGATACCTGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATATTGCCCCAGTACACAATAGGCACTCAATAGATACCTGTTGAA  750

seq1  AAAGAAATGAGTGAATTTAAATATCTCTAAAATCACGTAGAAAGGGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGAGTGAATTTAAATATCTCTAAAATCACGTAGAAAGGGAAGC  800

seq1  CTGAGAGCCTGAGTTAACTCCAAGAACTCACATGGCAGAAGGAAAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGCCTGAGTTAACTCCAAGAACTCACATGGCAGAAGGAAAGGAAA  850

seq1  GAACCGATTCCTATAATTGTGCTCTAACCTCCACACTCAGGTTGTAGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGATTCCTATAATTGTGCTCTAACCTCCACACTCAGGTTGTAGTCT  900

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACA  950

seq1  TACACACACACATACACAC-ATTTATTAATGTAAAAGAGTCAAAT-ATAT  998
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  TACACACACACATACACACAATTTATTAATGTAAAAGAGTCAAATAATAT  1000

seq1  AAAGCCATG--TTTTATTT-CATTGTGACAGCCATATC-TTTAATATTT-  1043
      |||||||||  |||||||| |||||||||||||||||| |||||||||| 
seq2  AAAGCCATGGTTTTTATTTCCATTGTGACAGCCATATCTTTTAATATTTA  1050

seq1  AAACACTAG--CAACA-CTC-AGACCCCACAC  1071
      |||||||||  ||||| |||  ||||||||||
seq2  AAACACTAGGCCAACACCTCTGGACCCCACAC  1082

seq1: chr1_42775738_42776863
seq2: B6Ng01-285M05.g_70_1202 (reverse)

seq1  GTAACTTAAAACAAAGGAGGAT-GCCTGGG-CTGTGGCA-GCTCACAGGA  47
      ||||||| |||||||||||||| ||||||| |||||||| ||||||||||
seq2  GTAACTT-AAACAAAGGAGGATGGCCTGGGCCTGTGGCAGGCTCACAGGA  49

seq1  --GTCATTTCCTCTCCC-TCATTAAAGCTGCTTCCAGGAG-AAAGAGTAG  93
         |||||  ||||||| |||| || ||||| |||||||| |||||||||
seq2  AGTTCATT--CTCTCCCTTCATAAAGGCTGC-TCCAGGAGAAAAGAGTAG  96

seq1  CTCCTGGAGGCCCTGGGACCCCGAGACCT-AAAAGCCCACTGCAGT-ACT  141
      ||||||||||||||||||||||||||| | |||||||||||||||| |||
seq2  CTCCTGGAGGCCCTGGGACCCCGAGACTTAAAAAGCCCACTGCAGTAACT  146

seq1  TGGATCCAAGCCATTTGCTTCTAGAGAGAATCATGTCGGGTAGGAGCTTA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCAAGCCATTTGCTTCTAGAGAGAATCATGTCGGGTAGGAGCTTA  196

seq1  CTTTTTCCATTTGCAATGGCTTATTAAGTATAAGCATCTCTCTTCTCTCT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCATTTGCAATGGCTTATTAAGTATAAGCATCTCTCTTCTCTCT  246

seq1  GTTTACTGAG-TTATTAGGTCTCCCTCCAACTGACCCTGCCAGAGGAGAT  290
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGAGTTTATTAGGTCTCCCTCCAACTGACCCTGCCAGAGGAGAT  296

seq1  AGCC-AAAGTGGATCCTTAACACACAGTTACCCTGCAAAATGTCCTTCTC  339
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAGTGGATCCTTAACACACAGTTACCCTGCAAAATGTCCTTCTC  346

seq1  ATAAACCCAGGGACCACAGCCAGGACTGTATACTTCCTTTTGGAATCTTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCAGGGACCACAGCCAGGACTGTATACTTCCTTTTGGAATCTTT  396

seq1  TCTGCGTGGCCAGCAGAGGAAATGCCCATAGACAGTAAATGGGATGAATG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTGGCCAGCAGAGGAAATGCCCATAGACAGTAAATGGGATGAATG  446

seq1  CCACCCATGGTTACAGGCTCCATTCTAGCTACAGTGTGCAGAGACTGGAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATGGTTACAGGCTCCATTCTAGCTACAGTGTGCAGAGACTGGAA  496

seq1  GGAGCTTAGCTGGGGGGACTCAGTCTCTAGGTTCCATTACTTTCACCAAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTAGCTGGGGGGACTCAGTCTCTAGGTTCCATTACTTTCACCAAG  546

seq1  TCTTTCCGAAGTTGTACAGTTGCCCTGCCTTAGAAGGGTGACATTCTGTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCGAAGTTGTACAGTTGCCCTGCCTTAGAAGGGTGACATTCTGTC  596

seq1  CTGATGAGACAAAACACAAGTGGCAAATGACAGTGCTCTGTTCCCACCTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGACAAAACACAAGTGGCAAATGACAGTGCTCTGTTCCCACCTG  646

seq1  GCAGGCAGTGAAAAACATCTGGGAACAGGAAACCAGAAAATATTCACCAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGTGAAAAACATCTGGGAACAGGAAACCAGAAAATATTCACCAG  696

seq1  GTAGTGTCTGGTTAGTCATTGGTCACCTGGCTGAGCTGACTGGTAAGAAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTCTGGTTAGTCATTGGTCACCTGGCTGAGCTGACTGGTAAGAAG  746

seq1  GACAGCTTGGTATAAAGACAGGCCAGCTGTATTAGCAGACCCAGCATCCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTGGTATAAAGACAGGCCAGCTGTATTAGCAGACCCAGCATCCA  796

seq1  TCAGCTCCACTAAAAGGTCACAGTGGAAACAAAATCATGCAATTTACCCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCACTAAAAGGTCACAGTGGAAACAAAATCATGCAATTTACCCA  846

seq1  AATTTCAGAGGTGGAATTCAATTGTCGGGCTTGGTCTGGAAATGAGGATG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGAGGTGGAATTCAATTGTCGGGCTTGGTCTGGAAATGAGGATG  896

seq1  AATTATTCCTAACTAAGTGGATTCTTTCTCCCTGGTGCCAATGTCTTTAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCCTAACTAAGTGGATTCTTTCTCCCTGGTGCCAATGTCTTTAC  946

seq1  TGTGATGTGGGGAATACCCATGGTACACCACTGACATCCCTAGATACACT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTGGGGAATACCCATGGTACACCACTGACATCCCTAGATACACT  996

seq1  TCCTGTCTGCATAGATCATAGGCTGCATGATGTGACTCAATAGATTCCCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTGCATAGATCATAGGCTGCATGATGTGACTCAATAGATTCCCA  1046

seq1  CCTGGTGCATATTCTCAAAGGGAGCTCAATACTCAGATTCTGTACTGTGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCATATTCTCAAAGGGAGCTCAATACTCAGATTCTGTACTGTGT  1096

seq1  TTTCATGATAAACCTGGCCATCAGACACTTAGAATTC  1126
      |||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATAAACCTGGCCATCAGACACTTAGAATTC  1133