BAC Information

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BAC

Clone NameB6Ng01-285N03
Chromosome1 (Build37)
Map Location 49,460,338 - 49,523,247
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430
Downstream geneLOC100041981, EG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285N03.bB6Ng01-285N03.g
ACCGA084171GA084172
length1,019567
definitionB6Ng01-285N03.b B6Ng01-285N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,522,232 - 49,523,247)(49,460,338 - 49,460,910)
sequence
gaattcatacaaaactaaaaattaagtacttaattgaaactgtcaatcca
taaatgcacaaatgacttgagcaacagttttgaaaagtggcaacaacttt
gaaaagcagcaacacaaatggccaataaagcacaaatggccaataaagca
caaatggccagtaaagcacaaatggccaataaagcacatatggacaataa
gcagttgtcaaatctgtaatatacattaagaaatgcaagctaaaatgatg
aaatctgtacctcatgaatattagaattttgtagatcaataaaattaata
aaatgaaaacacaaaaaaaagtcctggtgaagatagcaggaaaatgtacc
cttcctcaattttttgtgagagtaaaaactggtgcagctcccttagaaat
cattttggtatttctaaaaataaattaaacatgcaaatactctaagacgc
attgacatattcccaaagaagtgctattggacatattcccaaagaagagg
tttcttttttcttttttttttggtttttcgagacagggtttctctgtata
gccctggctgtcctggaactcactttgtagaccaggctggcctcgaactc
agagatccacctgcctctgcctcccaagtgctgggattaaaggcatgtgc
caccacacccagctaagaagaggtttctgccatacagataattgcacaaa
taagttacctgcttctttagtcacaataatgatcacatggaatcaattga
gatttctataaacaggagaatggacaaagaatatgtggtacatatttaca
atgtaattttatccaggtttaaataaaaaaaaatatacatacacatatat
atttgtcacatatatcatttatgtgtatatacatgtatatgtgatatatg
catgatatatctttctgaatagtaatctaaatatatattttaaatttata
tatatatatgtatatatatatatatatatatatatatatcgtctaagcac
acatatatgtgttgtaagc
cagtacaacttccaactgcttaagcctatactaatttctcagctacaaac
atgaacttttgtagtagtttctccagtaactccaattcaataaaaggtat
gcactgaatccctatgccaatcttcttgagtatctttgcatcaatattca
taagcaaaataggtatgaagttcactttctttgttgaatctctgtgtggt
ttaggtattggagtaactttggcttcatagaatgaataaagtggtgttct
ttttgtttctagtctgtggaatattttgaggagtattagctcttctataa
tggtctgatagaattgtccactaaaaccatctggcccagggcttttgttt
tgttggggtagtttttttttttttaatatttttttattatgtattttcct
caattacatttccaatgctatcccaaaagtcccccataccctcccccccc
cacactcccctacccaccctttcccactttttggccctggcgttgccctg
tcctggggcatatatactttgcttgtccattgggcctctctttgcagtga
tggccgactaggccgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49522232_49523247
seq2: B6Ng01-285N03.b_49_1067 (reverse)

seq1  GCTTA-GACACATATATGTGTGCTTAGAC-ATATATATATATATATATAT  48
      |||||  |||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTACAACACATATATGTGTGCTTAGACGATATATATATATATATATAT  50

seq1  ATATATATACATATATATATATAAATTT-AAATATATATTTAGATTACTA  97
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATATATATACATATATATATATAAATTTAAAATATATATTTAGATTACTA  100

seq1  TTCAGAAAGATATATCATGCATATATCACATATACATGTATATACACATA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGATATATCATGCATATATCACATATACATGTATATACACATA  150

seq1  AATGATATATGTGACAAATATATATGTGTATGTATATTTTTTTTTATTTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATATGTGACAAATATATATGTGTATGTATATTTTTTTTTATTTA  200

seq1  AACCTGGATAAAATTACATTGTAAATATGTACCACATATTCTTTGTCCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGATAAAATTACATTGTAAATATGTACCACATATTCTTTGTCCAT  250

seq1  TCTCCTGTTTATAGAAATCTCAATTGATTCCATGTGATCATTATTGTGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTTTATAGAAATCTCAATTGATTCCATGTGATCATTATTGTGAC  300

seq1  TAAAGAAGCAGGTAACTTATTTGTGCAATTATCTGTATGGCAGAAACCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGCAGGTAACTTATTTGTGCAATTATCTGTATGGCAGAAACCTC  350

seq1  TTCTTAGCTGGGTGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCTGGGTGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAGG  400

seq1  CAGAGGCAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGA  450

seq1  GTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAA  500

seq1  AAAAAAAAGAAAAAAGAAACCTCTTCTTTGGGAATATGTCCAATAGCACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAAAAGAAACCTCTTCTTTGGGAATATGTCCAATAGCACT  550

seq1  TCTTTGGGAATATGTCAATGCGTCTTAGAGTATTTGCATGTTTAATTTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGAATATGTCAATGCGTCTTAGAGTATTTGCATGTTTAATTTAT  600

seq1  TTTTAGAAATACCAAAATGATTTCTAAGGGAGCTGCACCAGTTTTTACTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAATACCAAAATGATTTCTAAGGGAGCTGCACCAGTTTTTACTC  650

seq1  TCACAAAAAATTGAGGAAGGGTACATTTTCCTGCTATCTTCACCAGGACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAAATTGAGGAAGGGTACATTTTCCTGCTATCTTCACCAGGACT  700

seq1  TTTTTTTGTGTTTTCATTTTATTAATTTTATTGATCTACAAAATTCTAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTGTTTTCATTTTATTAATTTTATTGATCTACAAAATTCTAAT  750

seq1  ATTCATGAGGTACAGATTTCATCATTTTAGCTTGCATTTCTTAATGTATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAGGTACAGATTTCATCATTTTAGCTTGCATTTCTTAATGTATA  800

seq1  TTACAGATTTGACAACTGCTTATTGTCCATATGTGCTTTATTGGCCATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATTTGACAACTGCTTATTGTCCATATGTGCTTTATTGGCCATTT  850

seq1  GTGCTTTACTGGCCATTTGTGCTTTATTGGCCATTTGTGCTTTATTGGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTACTGGCCATTTGTGCTTTATTGGCCATTTGTGCTTTATTGGCC  900

seq1  ATTTGTGTTGCTGCTTTTCAAAGTTGTTGCCACTTTTCAAAACTGTTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTGCTGCTTTTCAAAGTTGTTGCCACTTTTCAAAACTGTTGCT  950

seq1  CAAGTCATTTGTGCATTTATGGATTGACAGTTTCAATTAAGTACTTAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATTTGTGCATTTATGGATTGACAGTTTCAATTAAGTACTTAATT  1000

seq1  TTTAGTTTTGTATGAATTC  1016
      |||||||||||||||||||
seq2  TTTAGTTTTGTATGAATTC  1019

seq1: chr1_49460338_49460910
seq2: B6Ng01-285N03.g_68_640

seq1  GAATTCCAGTACAACTTCCAACTGCTTAAGCCTATACTAATTTCTCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTACAACTTCCAACTGCTTAAGCCTATACTAATTTCTCAGCT  50

seq1  ACAAACATGAACTTTTGTAGTAGTTTCTCCAGTAACTCCAATTCAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATGAACTTTTGTAGTAGTTTCTCCAGTAACTCCAATTCAATAAA  100

seq1  AGGTATGCACTGAATCCCTATGCCAATCTTCTTGAGTATCTTTGCATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGCACTGAATCCCTATGCCAATCTTCTTGAGTATCTTTGCATCAA  150

seq1  TATTCATAAGCAAAATAGGTATGAAGTTCACTTTCTTTGTTGAATCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAAGCAAAATAGGTATGAAGTTCACTTTCTTTGTTGAATCTCTG  200

seq1  TGTGGTTTAGGTATTGGAGTAACTTTGGCTTCATAGAATGAATAAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTAGGTATTGGAGTAACTTTGGCTTCATAGAATGAATAAAGTGG  250

seq1  TGTTCTTTTTGTTTCTAGTCTGTGGAATATTTTGAGGAGTATTAGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTTGTTTCTAGTCTGTGGAATATTTTGAGGAGTATTAGCTCTT  300

seq1  CTATAATGGTCTGATAGAATTGTCCACTAAAACCATCTGGCCCAGGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGGTCTGATAGAATTGTCCACTAAAACCATCTGGCCCAGGGCTT  350

seq1  TTGTTTTGTTGGGGTAGTTTTTTTTTTTTTAATATTTTTTTATTATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTGGGGTAGTTTTTTTTTTTTTAATATTTTTTTATTATGTAT  400

seq1  TTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCC  450

seq1  CCCCCCCACACTCCCCTACCCACCCATTCCCACTTTTTGGCCCTGGCGTT  500
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCCCCACACTCCCCTACCCACCCTTTCCCACTTTTTGGCCCTGGCGTT  500

seq1  CCCCTGTACTGGGGCATATAAACTTTGCTTGTCCAATGGGCCTCTCTTTC  550
       |||||| |||||||||||| |||||||||||||| ||||||||||||| 
seq2  GCCCTGTCCTGGGGCATATATACTTTGCTTGTCCATTGGGCCTCTCTTTG  550

seq1  CAGTGATGGCCGACTAGGCCATC  573
      |||||||||||||||||||| ||
seq2  CAGTGATGGCCGACTAGGCCGTC  573