BAC Information

Click to search

BAC

Clone NameB6Ng01-286I24
Chromosome1 (Build37)
Map Location 187,135,618 - 187,272,743
singlet/doubletdoublet
Overlap geneIars2, Bpnt1, Eprs, 9630028B13Rik
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneLOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286I24.bB6Ng01-286I24.g
ACCGA084727GA084728
length1,089579
definitionB6Ng01-286I24.b B6Ng01-286I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,135,618 - 187,136,729)(187,272,167 - 187,272,743)
sequence
gaattcattagtgttttcccttccgataaatacttacaagtagaattctt
tataatgaaactgaggtcatgctttcaaatagtgtaaaagaatttcttaa
ggtttgtccttgcaaactcaagaattctctttattttattaacaatattc
tatacttcagcacacagttgacttatgacctaaagaccagtataaattac
tgttgataaaagtgggtgaaaccacttatcactctgtagtctgtttccat
tttaatgctgtatttcacagagcaataagtcagaccatactagaactttg
tactcagaggccttatctgtcacgcattccgtgttcctgcttcggtttcc
atcagggaaaacccaggcagtggggcagctctgacggcagccaatcaccc
gggctctgctatcagcagcatgtgctatttagccgagaagcaggaagcac
tcaggacttccaggtaaggagccgctgctgtcctcttggtcctctgttct
ctctttataagcaaaaggcacaggacaggatctctgctggaagtgaccgt
ggaaagaacgaggtaagaggctaagagttcctgtctgttgtctaaatgtg
acaaagaacacggtggagcttcagaaggaagagcctgttcccaccaagtc
caatgcgcaggctgtagaggcagcaggcaacgatttaggatgctttcttt
acttactgaacataaagtccacaggtttccagaggctggctctaagctac
cttagcgcgtaagtcaacagtgctggtgacaacatacgtctaaaataagg
aaagaaacgccatcaacagcttcctgtcttctctaggtggccaatgtttc
taaattttatccattttatgttaaaatacttgttgccaggaagtggtggt
tcacgccttatcccagcacttggaggcagaggtagtggatttctgagttg
agaccgcctgtctacagagtgagttcaggacagcagagctatacagagaa
ccctgtctcgaaaaagaacaaccaactgtttcattaaccaaggactagat
gcacctaattatacggggattaatttacagattcaggaa
gaattctcagcgattcctgagggctcagagacatcgattcctgagagctc
agagacatcgattcctgagggctcagagacatcgattcctgagggctcag
agacatcgattcctgagggctcagagacagcgattcctgagggctcagag
acaagctgccctgcctcctgctccatgacttcttcactgggacacactgc
gtcctcgaagtctcagctcaaaccagcccttcctttcctgaatggcgttt
gtcaggtgttcctcacagcaaagagaagaacaatgaataggggaactctt
gtactcaaggcctgcctgtggaggtgtgggaatgatttgtgactggggca
agaagaggagagcattagaggccaaaccaggaagttcggaaacacctccc
attcagagttcaacactacatactgtatcatgtgaagtctgatgggggca
ggggggggcaagggggggaagtagtcagctgtgagacttccaattcaaat
gaaggagaaagaatactcaaagttttaaaaatatatatatagaaaatggc
caccttggtgtttattcttaaccatatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187135618_187136729
seq2: B6Ng01-286I24.b_46_1134

seq1  GAATTCATTAGTGTTTTCCCTTCCGATAAATACTTACAAGTAGAATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTGTTTTCCCTTCCGATAAATACTTACAAGTAGAATTCTT  50

seq1  TATAATGAAACTGAGGTCATGCTTTCAAATAGTGTAAAAGAATTTCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGAAACTGAGGTCATGCTTTCAAATAGTGTAAAAGAATTTCTTAA  100

seq1  GGTTTGTCCTTGCAAACTCAAGAATTCTCTTTATTTTATTAACAATATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTCCTTGCAAACTCAAGAATTCTCTTTATTTTATTAACAATATTC  150

seq1  TATACTTCAGCACACAGTTGACTTATGACCTAAAGACCAGTATAAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCAGCACACAGTTGACTTATGACCTAAAGACCAGTATAAATTAC  200

seq1  TGTTGATAAAAGTGGGTGAAACCACTTATCACTCTGTAGTCTGTTTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATAAAAGTGGGTGAAACCACTTATCACTCTGTAGTCTGTTTCCAT  250

seq1  TTTAATGCTGTATTTCACAGAGCAATAAGTCAGACCATACTAGAACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTGTATTTCACAGAGCAATAAGTCAGACCATACTAGAACTTTG  300

seq1  TACTCAGAGGCCTTATCTGTCACGCATTCCGTGTTCCTGCTTCGGTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGAGGCCTTATCTGTCACGCATTCCGTGTTCCTGCTTCGGTTTCC  350

seq1  ATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCCAATCACCC  400

seq1  GGGCTCTGCTATCAGCAGCATGTGCTATTTAGCCGAGAAGCAGGAAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGCTATCAGCAGCATGTGCTATTTAGCCGAGAAGCAGGAAGCAC  450

seq1  TCAGGACTTCCAGGTAAGGAGCCGCTGCTGTCCTCTTGGTCCTCTGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTTCCAGGTAAGGAGCCGCTGCTGTCCTCTTGGTCCTCTGTTCT  500

seq1  CTCTTTATAAGCAAAAGGCACAGGACAGGATCTCTGCTGGAAGTGACCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATAAGCAAAAGGCACAGGACAGGATCTCTGCTGGAAGTGACCGT  550

seq1  GGAAAGAACGAGGTAAGAGGCTAAGAGTTCCTGTCTGTTGTCTAAATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACGAGGTAAGAGGCTAAGAGTTCCTGTCTGTTGTCTAAATGTG  600

seq1  ACAAAGAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCCACCAAGTC  650

seq1  CAATGCGCAGGCTGTAGAGGCAGCAGGCAACGATTTAGGATGCTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCGCAGGCTGTAGAGGCAGCAGGCAACGATTTAGGATGCTTTCTTT  700

seq1  ACTTACTGAACATAAAGTCCACAGGTTTCCAGAGGCTGGCTCTAAGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGAACATAAAGTCCACAGGTTTCCAGAGGCTGGCTCTAAGCTAC  750

seq1  CTTAGCGCGTAAGTCAACAGTGCTGGTGACAACATACGTCTAAAATAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGCGTAAGTCAACAGTGCTGGTGACAACATACGTCTAAAATAAGG  800

seq1  AAAGAAACGCCATCAACAGCTTCCTGTCTTCTCTAGGTGGCCAATGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACGCCATCAACAGCTTCCTGTCTTCTCTAGGTGGCCAATGTTTC  850

seq1  TAAATTTTATCCATTTTATGTTAAAAAATACTTGTTGCCAGGAAGTGGTG  900
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  TAAATTTTATCCATTTTATGTT--AAAATACTTGTTGCCAGGAAGTGGTG  898

seq1  GTTCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGTAGGTGGATTTCT  950
      |||||||||||  |||||||||||| ||||||||||||| ||||||||||
seq2  GTTCACGCCTT--ATCCCAGCACTT-GGAGGCAGAGGTA-GTGGATTTCT  944

seq1  GAGTTTGAGACCCGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGC  1000
      ||| |||||| |||||| |||||||||||||||| |||||||| ||||||
seq2  GAG-TTGAGA-CCGCCT-GTCTACAGAGTGAGTT-CAGGACAG-CAGAGC  989

seq1  TATACAGAGAAACCCTGTCTCCGAAAAAAAAAACAAAACAAAACTTGTTT  1050
      ||||||||| |||||||||||  |||| || |||       ||||   ||
seq2  TATACAGAG-AACCCTGTCTCGAAAAAGAACAAC------CAACT--GTT  1030

seq1  TCATTAACCAGGGACTAGATTGCCACCTAAATTATACGGGGATTATATTA  1100
      |||||||||| |||||||||   ||||| ||||||||||||||||  |||
seq2  TCATTAACCAAGGACTAGAT--GCACCT-AATTATACGGGGATTAATTTA  1077

seq1  CAGATTCAGGAA  1112
      ||||||||||||
seq2  CAGATTCAGGAA  1089

seq1: chr1_187272167_187272743
seq2: B6Ng01-286I24.g_69_647 (reverse)

seq1  GGCTATGGTTTAGAATAAACACCAAGGTGG-CATTTTCTATATATATATT  49
      || ||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GGATATGGTTAAGAATAAACACCAAGGTGGCCATTTTCTATATATATATT  50

seq1  TTT-AAACTTTGAGTATTCTTTCTCCTTCATTTGAATTGGAAGTCTCACA  98
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTTTGAGTATTCTTTCTCCTTCATTTGAATTGGAAGTCTCACA  100

seq1  GCTGACTACTTCCCCCCCTTGCCCCCCCCTGCCCCCATCAGACTTCACAT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTACTTCCCCCCCTTGCCCCCCCCTGCCCCCATCAGACTTCACAT  150

seq1  GATACAGTATGTAGTGTTGAACTCTGAATGGGAGGTGTTTCCGAACTTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGTATGTAGTGTTGAACTCTGAATGGGAGGTGTTTCCGAACTTCC  200

seq1  TGGTTTGGCCTCTAATGCTCTCCTCTTCTTGCCCCAGTCACAAATCATTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGCCTCTAATGCTCTCCTCTTCTTGCCCCAGTCACAAATCATTC  250

seq1  CCACACCTCCACAGGCAGGCCTTGAGTACAAGAGTTCCCCTATTCATTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTCCACAGGCAGGCCTTGAGTACAAGAGTTCCCCTATTCATTGT  300

seq1  TCTTCTCTTTGCTGTGAGGAACACCTGACAAACGCCATTCAGGAAAGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTTTGCTGTGAGGAACACCTGACAAACGCCATTCAGGAAAGGAA  350

seq1  GGGCTGGTTTGAGCTGAGACTTCGAGGACGCAGTGTGTCCCAGTGAAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTTTGAGCTGAGACTTCGAGGACGCAGTGTGTCCCAGTGAAGAA  400

seq1  GTCATGGAGCAGGAGGCAGGGCAGCTTGTCTCTGAGCCCTCAGGAATCGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGAGCAGGAGGCAGGGCAGCTTGTCTCTGAGCCCTCAGGAATCGC  450

seq1  TGTCTCTGAGCCCTCAGGAATCGATGTCTCTGAGCCCTCAGGAATCGATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGAGCCCTCAGGAATCGATGTCTCTGAGCCCTCAGGAATCGATG  500

seq1  TCTCTGAGCCCTCAGGAATCGATGTCTCTGAGCTCTCAGGAATCGATGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGCCCTCAGGAATCGATGTCTCTGAGCTCTCAGGAATCGATGTC  550

seq1  TCTGAGCCCTCAGGAATCGCTGAGAATTC  577
      |||||||||||||||||||||||||||||
seq2  TCTGAGCCCTCAGGAATCGCTGAGAATTC  579