BAC Information

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BAC

Clone NameB6Ng01-286N15
Chromosome1 (Build37)
Map Location 81,363,229 - 81,479,534
singlet/doubletdoublet
Overlap genenone
Upstream geneEG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
Downstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286N15.bB6Ng01-286N15.g
ACCGA084941GA084942
length1,1431,078
definitionB6Ng01-286N15.b B6Ng01-286N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,478,393 - 81,479,534)(81,363,229 - 81,364,302)
sequence
gaattcaaaacaaaatatgtttctgattagaaacgattaaaatatttctt
tttgtttcaggtacaaaaccaccacccaaaccctccctttgctttgcttt
ctcagaactcctgtaagacaagcctttgtgcatgtaaggcatgcctttaa
acaaataaatcacttgtgtcatgattttctcagtaattaaacaaagaaac
aaacatactacagaaattttgaagccaaaattattggaacactctgttgt
tgctatttaattacatgtgttctaaagaaaacagtattttaaaagttcat
cttcactctgaataccaatttgcccttgagtgatggacagctagtatatt
tatgcattcatgttgagacactgagttttctcacttgtgattttaccaat
gccataaattttagagttagcataagtccagctttcaggatgaagggtgt
ccctactcagctatactctgagcctggtgttccagcctgtcctgtcacaa
aagagtttatagaccacttctcccatcacatggaactctgaaatctgggt
cttaagttctcaacttatgaatataaaatatgctatttttcatagtcctt
ttgaaagtattaagaataattgtatgtatgtaagtatgaagttgtggtca
acagtgctcgcatatttatagcatcatgaaaataaaataactacctctct
tccttttactcttctaacctactctttcctcctagtcccttgtactgctg
ttaacaacatagaaagtagcctactattcattttctcattacaaaataat
catgttattcagacatgcctacattgtgtataaatatccatatagatatg
gggatcctgatcataattttcaataaggaatattatgcctgatggtcatt
tttaaattttttctttctttttgaaatttcttaatgaatagaagttaggg
gaaatctctcaacgataagtaacatacagtgaataaatgacaaggaatag
aagcacagggatctaggcctgctgggaagaggtggctaataggattgggt
gtaggaatttccaaaggtagattctaagatacaaaggtggttctgtactg
gggtggacttcacagaacaataatcgttattacttcattctct

gaattctttcaagaaaagcttacttgtgatattctcaccaatttaatttc
gattccctcttaatttctcataagggaaacaaccgttggacttcaaagtc
atggtacacttgtaaaataatcttaatcttctgatgaaaagataaaataa
ccattagatccaagtttggctctgaatgcacctggaaaggtgcatggatt
cctacataccttggcctaattatgtctttgtagcagataaactttattat
tttgaacactgaaagtttttccagtcaggtcctgcaacatttctaaggaa
attatgtttaagatgcaatgaaatctgactagtgccactaatctcagcca
agtgtgtgtcatgatctggcttatcagaggcatagtctactgtgatccaa
ctcctttaatgttttagttgagttagtcatgtatggcactgagtctgcca
ataatgcctcagtgtttaaatttattagatgagaaacacctgggatatgc
tgggtgtaatataaatctgttgatgcaattccagaaatatctctgtaatt
atgaaagggaagggcttcacattgctcaataaaatcaccttaaaggtaaa
atttgaagagtgattaatcatgttctgttcaggttcagacaatgtacctc
atcacagcatgccaacccactctgttctacttcttccaacttcagtgtct
acatcttgctctgagtatttgattgtagacaaaccaaaagcaggtgccag
tggtccaaagagaatgactctgctccatatcagttttccacctcagtctc
tttctgtattgctgtgccctttgatccagaattaggtccaatatcagtgt
tttccttgcccgaagctgctgttccacaaggaggaaaggatgtttggatc
ttagaaattaagaagaaaaatgggcaatgatctaattgtagttttagata
ctggctttgatgggagtggctcattaatgagatcttttacacagttaaga
attcaacggagaccctttgtttgtagaatatataaagaaagaacagccag
gaatgctagaataagaacattgagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81478393_81479534
seq2: B6Ng01-286N15.b_48_1190 (reverse)

seq1  AGAGAATGAAGGTAATAAAGGAATTTATTG-TCTGTGGAAAGTTCACCCA  49
      |||||||||| ||||||| |    |||||| ||||||  |||| ||||| 
seq2  AGAGAATGAA-GTAATAACG---ATTATTGTTCTGTG--AAGTCCACCCC  44

seq1  AGTTACAGA--CA-CTTTGTATTCTTAGAATCTACTTTTGGAAATT-CTA  95
      || ||||||  || ||||||| ||||||||||||| |||||||||| |||
seq2  AG-TACAGAACCACCTTTGTA-TCTTAGAATCTACCTTTGGAAATTCCTA  92

seq1  CA--CAATCCTATTAGCCACTTCTTCCCAGCAGG-CTAGATCCCTGTTGC  142
      ||  |||||||||||||||| ||||||||||||| ||||||||||| |||
seq2  CACCCAATCCTATTAGCCACCTCTTCCCAGCAGGCCTAGATCCCTG-TGC  141

seq1  TTCTATT-CTTGTCATTTTATTCACTGTATGTTACTTATCGTTGAGAGAT  191
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTATTCCTTGTCA-TTTATTCACTGTATGTTACTTATCGTTGAGAGAT  190

seq1  TTCCCCTAACTTCTATTCATTAAGAAATTTCAAAAAGAAAGAAAAAATTT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTAACTTCTATTCATTAAGAAATTTCAAAAAGAAAGAAAAAATTT  240

seq1  AAAAATGACCATCAGGCATAATATT-CTTATTGAAAATTATGATCAGGAT  290
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAATGACCATCAGGCATAATATTCCTTATTGAAAATTATGATCAGGAT  290

seq1  -CCCATATCTATATGGATATTTATACACAATGTAGGCATGTCTGAATAAC  339
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATCTATATGGATATTTATACACAATGTAGGCATGTCTGAATAAC  340

seq1  ATGATTATTTTGTAATGAGAAAATGAATAGTAGGCTACTTTCTATGTTGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATTTTGTAATGAGAAAATGAATAGTAGGCTACTTTCTATGTTGT  390

seq1  TAACAGCAGTACAAGGGACTAGGAGGAAAGAGTAGGTTAGAAGAGTAAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAGTACAAGGGACTAGGAGGAAAGAGTAGGTTAGAAGAGTAAAA  440

seq1  GGAAGAGAGGTAGTTATTTTATTTTCATGATGCTATAAATATGCGAGCAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGGTAGTTATTTTATTTTCATGATGCTATAAATATGCGAGCAC  490

seq1  TGTTGACCACAACTTCATACTTACATACATACAATTATTCTTAATACTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCACAACTTCATACTTACATACATACAATTATTCTTAATACTTT  540

seq1  CAAAAGGACTATGAAAAATAGCATATTTTATATTCATAAGTTGAGAACTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGACTATGAAAAATAGCATATTTTATATTCATAAGTTGAGAACTT  590

seq1  AAGACCCAGATTTCAGAGTTCCATGTGATGGGAGAAGTGGTCTATAAACT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGATTTCAGAGTTCCATGTGATGGGAGAAGTGGTCTATAAACT  640

seq1  CTTTTGTGACAGGACAGGCTGGAACACCAGGCTCAGAGTATAGCTGAGTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGACAGGACAGGCTGGAACACCAGGCTCAGAGTATAGCTGAGTA  690

seq1  GGGACACCCTTCATCCTGAAAGCTGGACTTATGCTAACTCTAAAATTTAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACCCTTCATCCTGAAAGCTGGACTTATGCTAACTCTAAAATTTAT  740

seq1  GGCATTGGTAAAATCACAAGTGAGAAAACTCAGTGTCTCAACATGAATGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGGTAAAATCACAAGTGAGAAAACTCAGTGTCTCAACATGAATGC  790

seq1  ATAAATATACTAGCTGTCCATCACTCAAGGGCAAATTGGTATTCAGAGTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATACTAGCTGTCCATCACTCAAGGGCAAATTGGTATTCAGAGTG  840

seq1  AAGATGAACTTTTAAAATACTGTTTTCTTTAGAACACATGTAATTAAATA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAACTTTTAAAATACTGTTTTCTTTAGAACACATGTAATTAAATA  890

seq1  GCAACAACAGAGTGTTCCAATAATTTTGGCTTCAAAATTTCTGTAGTATG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAACAGAGTGTTCCAATAATTTTGGCTTCAAAATTTCTGTAGTATG  940

seq1  TTTGTTTCTTTGTTTAATTACTGAGAAAATCATGACACAAGTGATTTATT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTTGTTTAATTACTGAGAAAATCATGACACAAGTGATTTATT  990

seq1  TGTTTAAAGGCATGCCTTACATGCACAAAGGCTTGTCTTACAGGAGTTCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAGGCATGCCTTACATGCACAAAGGCTTGTCTTACAGGAGTTCT  1040

seq1  GAGAAAGCAAAGCAAAGGGAGGGTTTGGGTGGTGGTTTTGTACCTGAAAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCAAAGCAAAGGGAGGGTTTGGGTGGTGGTTTTGTACCTGAAAC  1090

seq1  AAAAAGAAATATTTTAATCGTTTCTAATCAGAAACATATTTTGTTTTGAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAATATTTTAATCGTTTCTAATCAGAAACATATTTTGTTTTGAA  1140

seq1  TTC  1142
      |||
seq2  TTC  1143


seq1: chr1_81363229_81364302
seq2: B6Ng01-286N15.g_69_1146

seq1  GAATTCTTTCAAGAAAAGCTTACTTGTGATATTCTCACCAATTTAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAGAAAAGCTTACTTGTGATATTCTCACCAATTTAATTTC  50

seq1  GATTCCCTCTTAATTTCTCATAAGGGAAACAACCGTTGGACTTCAAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTCTTAATTTCTCATAAGGGAAACAACCGTTGGACTTCAAAGTC  100

seq1  ATGGTACACTTGTAAAATAATCTTAATCTTCTGATGAAAAGATAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACACTTGTAAAATAATCTTAATCTTCTGATGAAAAGATAAAATAA  150

seq1  CCATTAGATCCAAGTTTGGCTCTGAATGCACCTGGAAAGGTGCATGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGATCCAAGTTTGGCTCTGAATGCACCTGGAAAGGTGCATGGATT  200

seq1  CCTACATACCTTGGCCTAATTATGTCTTTGTAGCAGATAAACTTTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATACCTTGGCCTAATTATGTCTTTGTAGCAGATAAACTTTATTAT  250

seq1  TTTGAACACTGAAAGTTTTTCCAGTCAGGTCCTGCAACATTTCTAAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACACTGAAAGTTTTTCCAGTCAGGTCCTGCAACATTTCTAAGGAA  300

seq1  ATTATGTTTAAGATGCAATGAAATCTGACTAGTGCCACTAATCTCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTAAGATGCAATGAAATCTGACTAGTGCCACTAATCTCAGCCA  350

seq1  AGTGTGTGTCATGATCTGGCTTATCAGAGGCATAGTCTACTGTGATCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTCATGATCTGGCTTATCAGAGGCATAGTCTACTGTGATCCAA  400

seq1  CTCCTTTAATGTTTTAGTTGAGTTAGTCATGTATGGCACTGAGTCTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAATGTTTTAGTTGAGTTAGTCATGTATGGCACTGAGTCTGCCA  450

seq1  ATAATGCCTCAGTGTTTAAATTTATTAGATGAGAAACACCTGGGATATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCCTCAGTGTTTAAATTTATTAGATGAGAAACACCTGGGATATGC  500

seq1  TGGGTGTAATATAAATCTGTTGATGCAATTCCAGAAATATCTCTGTAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTAATATAAATCTGTTGATGCAATTCCAGAAATATCTCTGTAATT  550

seq1  ATGAAAGGGAAGGGCTTCACATTGCTCAATAAAATCACCTTAAAGGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGGAAGGGCTTCACATTGCTCAATAAAATCACCTTAAAGGTAAA  600

seq1  ATTTGAAGAGTGATTAATCATGTTCTGTTCAGGTTCAGACAATGTACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGAGTGATTAATCATGTTCTGTTCAGGTTCAGACAATGTACCTC  650

seq1  ATCACAGCATGCCAACCCACTCTGTTCTACTTCTTCCAACTTCAGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCATGCCAACCCACTCTGTTCTACTTCTTCCAACTTCAGTGTCT  700

seq1  ACATCTTGCTCTGAGTATTTGATTGTAGACAAACCAAAAGCAGGTGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGCTCTGAGTATTTGATTGTAGACAAACCAAAAGCAGGTGCCAG  750

seq1  TGGTCCAAAGAGAATGACTCTGCTCCATATCAGTTTTCCACCTCAGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAAAGAGAATGACTCTGCTCCATATCAGTTTTCCACCTCAGTCTC  800

seq1  TTTCTGTATTGCTGTGCCCCTTGATCCAGAATTAGGTCCAATATCAGGTG  850
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  TTTCTGTATTGCTGTGCCCTTTGATCCAGAATTAGGTCCAATATCA-GTG  849

seq1  TTTTCCTTGCCCGAAGCTGCTGTTCCAC-AGGAGGAAAGGATGTTTGGAT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTCCTTGCCCGAAGCTGCTGTTCCACAAGGAGGAAAGGATGTTTGGAT  899

seq1  CTTAGAAA-TAAGAAGAAAAATGGGCAATGATCTAATTGTAGTTTTAGAT  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATTAAGAAGAAAAATGGGCAATGATCTAATTGTAGTTTTAGAT  949

seq1  ACTGGCTTTGATGGGAGTGGCCTCAATTAATGAGATC-TTTACACAGTT-  996
      |||||||||||||||||||| ||| |||||||||||| ||||||||||| 
seq2  ACTGGCTTTGATGGGAGTGG-CTC-ATTAATGAGATCTTTTACACAGTTA  997

seq1  AGAATCAACCGGAGACCCTTTGTTTGGTAGA--ATATAAAGAAAG-ACAG  1043
      |||||  | |||||||||||||||| |||||  |||||||||||| ||||
seq2  AGAATTCAACGGAGACCCTTTGTTT-GTAGAATATATAAAGAAAGAACAG  1046

seq1  CCAGGAATGGTTAGATAAG-ACATTGAGAAAA  1074
      ||||||||| |   ||||| ||||||||||||
seq2  CCAGGAATGCTAGAATAAGAACATTGAGAAAA  1078


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