BAC Information

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BAC

Clone NameB6Ng01-286P18
Chromosome1 (Build37)
Map Location 56,222,088 - 56,358,627
singlet/doubletdoublet
Overlap genenone
Upstream geneRftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286P18.bB6Ng01-286P18.g
ACCGA085035GA085036
length1,1691,133
definitionB6Ng01-286P18.b B6Ng01-286P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,357,449 - 56,358,627)(56,222,088 - 56,223,223)
sequence
gaattcaaatacttagctctcattagtaatggaggcttccagatcatgaa
gggactgagactctctccagtttccaccaaatttccctgaattttagcta
tatatttgggtcaattaatctctttcctagtgatatctaaaccaaacatt
tcattctgttagagacacacaccctggaagtaacatttcctactggttct
cacttcagaggatacaagtgaccttctcgaaaagaaaaaggcaggagaaa
gagattgacacacacacacacacacacacacacacacacacacacacaga
gagagagagagagagagagagagagagagagagagagagagagagagatt
tcattagagatctaatgaagaaggacgctcacactaagtgtctgtaccta
tttggctcaatgacttcaaaaggacctacctatgttggttgtcaatgtag
aaggatgggcagggcatttgcttctagatcagactttcctggtgcattgt
ttgcttatgtatcatcttcttttaaatttattcactctttgagaaggaca
agatagtaatttttgaaacttctattatctctgaacttcattttatggaa
ttatttttaaaaattacaaaattcttattgtaaggagggtgaataatatc
atagggttttagaatacagatagatacacagcatggcttttttttagcgt
gcacaagtgcttggtaaaatattcaaatgacaattcaggtttcctgctct
gcaacttgttgtctgagtcaaacttaccaatggctcatggatgttccagt
tccattggatacaaactatatggccttcctgtacatgctatggctatctt
ttgttctgtcgaattctagattttagattaatttgtgggatatatttccc
ttgtctttgtcctgaaaatcaaaggaatttcagtgtcttcactagtgggt
ctattggttgacccatttacaaacttcttaaacctttcagattcttttca
tccacgacaggtagacaatatacagctagctactatttagatgaacgaga
acccactaaaggattccaacatgatccacacctccagcatgaggactctt
agcctgtgtttttgtggctcttcgaatccaattaaattagcttaatgaca
gtccattccctcgccatga
gaattccaggtgcactcagctttttatgtgggtgtgggagatttaactct
agactgtaaactggtacaggaagcactttagtgactgaattatctcctct
gtccaggaaatgctttttttcttttcttttgctttttttttttcaaggtg
gattttgaccccgtgcttctcaagcaccacatggctcagaactgtacatc
cttaagaggggtgtgacaatccacagtggtgcttgtcactgtgctgctaa
gtcattttatttgacaggtcagtttctccggatactgaatattcttattt
cttggggtaaaggctccaaaaaggaaatatttacagttatctttcaggca
atatccagaatctaattaaccaatctcatagaggaagtcatcattcttca
aagggaggggcagcaggtctctagagttgtaggcctcttcctgcttccat
tttacccaaggtcaggagagttaacagatgtgtcatgatgagtgacagga
gagtagactcattctccactttaaccactgcagcacacacccgagttgct
tgcaaatgttcaaacaaaatcaatttggggaagagtgagctgatgcagga
catgagggatggtggtatcatagcaaccattttcctctagtcacccccac
tctgagctgcaagtagttcctctcaggtactgtggctgcaaagggttagt
agctaaaatgcttaggggagatagcaggtagaaaagttgggaagtaggtt
tgattttttttaaaattagatattagtcatgcttttcactttttatagag
aaaaattcaagactgaataaatgtaaagacagtatatatgtccttccttt
atgacctgtccatctaaacccaaactcatctctaccactgcattcttcat
tttattatacttttctggaatcagaccacagagatgatagtctaaatgtt
gtttttttatagccaaccttatagccctaagttggggagacacatcaaga
agattaaaattgtcaagtcttttctgaagcattgtttgagactcctgata
tagcttctctggactttcttggagaccagtctcatagtagcattaactcc
ctgttccttacacgttctcatgctcttctacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56357449_56358627
seq2: B6Ng01-286P18.b_47_1215 (reverse)

seq1  TCAT-GCGA-GGAAT-GACTGTCATTTAAAGCTTAATATATAATTGATAT  47
      |||| |||| ||||| ||||||||||  |||||    || ||||||  ||
seq2  TCATGGCGAGGGAATGGACTGTCATT--AAGCT---AATTTAATTG-GAT  44

seq1  TCTGAAGAGCCACAAACACAGGGGTTAAAGAGCTCCTCATGCTTGGAGTG  97
      || ||||||||||||| |||  || | ||||| |||||||||| |  |||
seq2  TC-GAAGAGCCACAAAAACACAGGCT-AAGAG-TCCTCATGCTGGAGGTG  91

seq1  TGATCCATG-TGGAATCCTTTTTATGTGGTGTCTCTGTTCATCCTTAAAT  146
      ||   |||| |||||||||||    ||||  |||| |||||||  |||||
seq2  TGGATCATGTTGGAATCCTTT---AGTGGGTTCTC-GTTCATC--TAAAT  135

seq1  AGTTAGCTAGGTTGGTATTATTGTCTA-CTGT-GTGGATG-AAAGAATCT  193
      || ||||||| |  ||| ||||||||| |||| ||||||| |||||||||
seq2  AG-TAGCTAGCT--GTA-TATTGTCTACCTGTCGTGGATGAAAAGAATCT  181

seq1  G-AAGGTTTAAGGAAGTTTGT-AATGGTTCAACCAATAGACCCACTAGTG  241
      | ||||||||| ||||||||| ||||| ||||||||||||||||||||||
seq2  GAAAGGTTTAA-GAAGTTTGTAAATGGGTCAACCAATAGACCCACTAGTG  230

seq1  AAGACACTGAAATTCC-TTGATTTTCAGGACAAAGACAA-GGAAATATAT  289
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAGACACTGAAATTCCTTTGATTTTCAGGACAAAGACAAGGGAAATATAT  280

seq1  CCCACAAATTAATCTAAAATCTAGAATTCGACAGAACAAAAGATAGCCAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAATTAATCTAAAATCTAGAATTCGACAGAACAAAAGATAGCCAT  330

seq1  AGCATGTACAGGAAGGCCATATAGTTTGTATCCAATGGAACTGGAACATC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTACAGGAAGGCCATATAGTTTGTATCCAATGGAACTGGAACATC  380

seq1  CATGAGCCATTGGTAAGTTTGACTCAGACAACAAGTTGCAGAGCAGGAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCCATTGGTAAGTTTGACTCAGACAACAAGTTGCAGAGCAGGAAA  430

seq1  CCTGAATTGTCATTTGAATATTTTACCAAGCACTTGTGCACGCT-AAAAA  488
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTGAATTGTCATTTGAATATTTTACCAAGCACTTGTGCACGCTAAAAAA  480

seq1  AAGCCATGCTGTGTATCTATCTGTATTCTAAAACCCTATGATATTATTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGCTGTGTATCTATCTGTATTCTAAAACCCTATGATATTATTCA  530

seq1  CCCTCCTTACAATAAGAATTTTGTAATTTTTAAAAATAATTCCATAAAAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTACAATAAGAATTTTGTAATTTTTAAAAATAATTCCATAAAAT  580

seq1  GAAGTTCAGAGATAATAGAAGTTTCAAAAATTACTATCTTGTCCTTCTCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCAGAGATAATAGAAGTTTCAAAAATTACTATCTTGTCCTTCTCA  630

seq1  AAGAGTGAATAAATTTAAAAGAAGATGATACATAAGCAAACAATGCACCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGAATAAATTTAAAAGAAGATGATACATAAGCAAACAATGCACCA  680

seq1  GGAAAGTCTGATCTAGAAGCAAATGCCCTGCCCATCCTTCTACATTGACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCTGATCTAGAAGCAAATGCCCTGCCCATCCTTCTACATTGACA  730

seq1  ACCAACATAGGTAGGTCCTTTTGAAGTCATTGAGCCAAATAGGTACAGAC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATAGGTAGGTCCTTTTGAAGTCATTGAGCCAAATAGGTACAGAC  780

seq1  ACTTAGTGTGAGCGTCCTTCTTCATTAGATCTCTAATGAAATCTCTCTCT  838
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ACTTAGTGTGAGCGTCCTTCTTCATTAGATCTCTAATGAAA--TCTCTCT  828

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGT  878

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAATCTCTTTCTCCTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAATCTCTTTCTCCTG  928

seq1  CCTTTTTCTTTTCGAGAAGGTCACTTGTATCCTCTGAAGTGAGAACCAGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTTTTCGAGAAGGTCACTTGTATCCTCTGAAGTGAGAACCAGT  978

seq1  AGGAAATGTTACTTCCAGGGTGTGTGTCTCTAACAGAATGAAATGTTTGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGTTACTTCCAGGGTGTGTGTCTCTAACAGAATGAAATGTTTGG  1028

seq1  TTTAGATATCACTAGGAAAGAGATTAATTGACCCAAATATATAGCTAAAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATATCACTAGGAAAGAGATTAATTGACCCAAATATATAGCTAAAA  1078

seq1  TTCAGGGAAATTTGGTGGAAACTGGAGAGAGTCTCAGTCCCTTCATGATC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGAAATTTGGTGGAAACTGGAGAGAGTCTCAGTCCCTTCATGATC  1128

seq1  TGGAAGCCTCCATTACTAATGAGAGCTAAGTATTTGAATTC  1179
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCTCCATTACTAATGAGAGCTAAGTATTTGAATTC  1169

seq1: chr1_56222088_56223223
seq2: B6Ng01-286P18.g_70_1202

seq1  GAATTCCAGGTGCACTCAGCTTTTTATGTGGGTGTGGGAGATTTAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGCACTCAGCTTTTTATGTGGGTGTGGGAGATTTAACTCT  50

seq1  AGACTGTAAACTGGTACAGGAAGCACTTTAGTGACTGAATTATCTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTAAACTGGTACAGGAAGCACTTTAGTGACTGAATTATCTCCTCT  100

seq1  GTCCAGGAAATGCTTTTTTTCTTTTCTTTTGCTTTTTTTTTTTCAAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAAATGCTTTTTTTCTTTTCTTTTGCTTTTTTTTTTTCAAGGTG  150

seq1  GATTTTGACCCCGTGCTTCTCAAGCACCACATGGCTCAGAACTGTACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGACCCCGTGCTTCTCAAGCACCACATGGCTCAGAACTGTACATC  200

seq1  CTTAAGAGGGGTGTGACAATCCACAGTGGTGCTTGTCACTGTGCTGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGGGGTGTGACAATCCACAGTGGTGCTTGTCACTGTGCTGCTAA  250

seq1  GTCATTTTATTTGACAGGTCAGTTTCTCCGGATACTGAATATTCTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTATTTGACAGGTCAGTTTCTCCGGATACTGAATATTCTTATTT  300

seq1  CTTGGGGTAAAGGCTCCAAAAAGGAAATATTTACAGTTATCTTTCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTAAAGGCTCCAAAAAGGAAATATTTACAGTTATCTTTCAGGCA  350

seq1  ATATCCAGAATCTAATTAACCAATCTCATAGAGGAAGTCATCATTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGAATCTAATTAACCAATCTCATAGAGGAAGTCATCATTCTTCA  400

seq1  AAGGGAGGGGCAGCAGGTCTCTAGAGTTGTAGGCCTCTTCCTGCTTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGGGCAGCAGGTCTCTAGAGTTGTAGGCCTCTTCCTGCTTCCAT  450

seq1  TTTACCCAAGGTCAGGAGAGTTAACAGATGTGTCATGATGAGTGACAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCAAGGTCAGGAGAGTTAACAGATGTGTCATGATGAGTGACAGGA  500

seq1  GAGTAGACTCATTCTCCACTTTAACCACTGCAGCACACACCCGAGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGACTCATTCTCCACTTTAACCACTGCAGCACACACCCGAGTTGCT  550

seq1  TGCAAATGTTCAAACAAAATCAATTTGGGGAAGAGTGAGCTGATGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGTTCAAACAAAATCAATTTGGGGAAGAGTGAGCTGATGCAGGA  600

seq1  CATGAGGGATGGTGGTATCATAGCAACCATTTTCCTCTAGTCACCCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGATGGTGGTATCATAGCAACCATTTTCCTCTAGTCACCCCCAC  650

seq1  TCTGAGCTGCAAGTAGTTCCTCTCAGGTACTGTGGCTGCAAAGGGTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTGCAAGTAGTTCCTCTCAGGTACTGTGGCTGCAAAGGGTTAGT  700

seq1  AGCTAAAATGCTTAGGGGAGATAGCAGGTAGAAAAGTTGGGAAGTAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAATGCTTAGGGGAGATAGCAGGTAGAAAAGTTGGGAAGTAGGTT  750

seq1  TGA-TTTTTTTAAAATTAAATATTAGTCATGCTTTTCAC-TTTTATAGAG  798
      ||| |||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TGATTTTTTTTAAAATTAGATATTAGTCATGCTTTTCACTTTTTATAGAG  800

seq1  AAAAATTCAAGACTGAATAAATGTAAAGACAGTATATATGTCCTTCC-TT  847
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAAATTCAAGACTGAATAAATGTAAAGACAGTATATATGTCCTTCCTTT  850

seq1  ATGACCTGTCCATCTAAACCCAAACTCATCTCTACCACTGCATTCTTCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGTCCATCTAAACCCAAACTCATCTCTACCACTGCATTCTTCAT  900

seq1  TTTA-TATAC-TTTCTGGAATCAGACCACAGAGATGATAGTCTAAATG-T  944
      |||| ||||| ||||||||||||||||||||||||||||||||||||| |
seq2  TTTATTATACTTTTCTGGAATCAGACCACAGAGATGATAGTCTAAATGTT  950

seq1  GTTTTTATA-AGGCAACC-TATAGCCTTAAGTT-GGGAGACACATCAAAG  991
      |||||| || || ||||| ||||||| |||||| |||||||||||| |||
seq2  GTTTTTTTATAGCCAACCTTATAGCCCTAAGTTGGGGAGACACATC-AAG  999

seq1  AAGATTAAAATTTTGTCAAGTCTTTTCTGGAAAGCCATGTTTTGAGACTT  1041
      ||||||||||  |||||||||||||||||  ||| |||  |||||||| |
seq2  AAGATTAAAA--TTGTCAAGTCTTTTCTG--AAG-CATTGTTTGAGAC-T  1043

seq1  CCTGGATATAGCTTCTCTGACATTTCTTGGAGACCAGTCTCATAGTAGGC  1091
      ||| |||||||||||||||   ||||||||||||||||||||||||| ||
seq2  CCT-GATATAGCTTCTCTGGACTTTCTTGGAGACCAGTCTCATAGTA-GC  1091

seq1  ATT-ACTCCTCTGTCTCTTACAACCTTCTCATGCCCTCTTCTACAA  1136
      ||| ||||| ||||  ||||| || ||||||||  |||||||||||
seq2  ATTAACTCC-CTGTTCCTTAC-ACGTTCTCATG--CTCTTCTACAA  1133