BAC Information

Click to search

BAC

Clone NameB6Ng01-287H22
Chromosome1 (Build37)
Map Location 154,812,417 - 155,004,355
singlet/doubletdoublet
Overlap geneNmnat2, Lamc2
Upstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097
Downstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287H22.bB6Ng01-287H22.g
ACCGA085402GA085403
length2321,186
definitionB6Ng01-287H22.b B6Ng01-287H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,812,417 - 154,812,648)(155,003,172 - 155,004,355)
sequence
ttacactattccttgtaagtcagtacagtctttgttggtcaaaaattgtt
tgaattcttatttagtattaactgatgtgttatgaatcacagagaaacat
ttatgcacatatctctgatgttagactatctcaaatgaacaggtgaaaac
acaacaaaataacactaaagtttgaacctctgttcttaagattctgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctggccagtggctttttggctgtttgctggtattgaaatattgtt
gatgagtttaggcagctgtctgggccacttgtctcaaggaccgtcccccc
aagacctttcctggtttgacactgttaatgttttatgcatcatttcgctt
ttgtagtagaaaaacagtgtgctaggaacatgtatggtttggtgaatgac
ttcagtataagcctccttccccctctgcctttctattctcctcctttctc
cctgatttttttgtttgtttgttttgctttttttgtttttgtttagtatt
attgtgtgctttattgttttggttttgagacaaggccttgttatgtagct
caggctagcctcaaatgttctcctgcctccgtctccacagaactggagtt
ataaagtaggagtttcaacaagtcagtttaaaatgtcctgtttctcctcc
ctctggtttggccttcatcatgaggatcctggtttggggacatggatagt
agaaaaagatggggcatctctatccacaagtccacttggttctgtttggt
tcctgaagtctgattctgggttcagcacgaataaccagaaatgcatgccc
ctgaccggcagtttgcagcagtagaaaatgttagttctgactgaatacag
accattggattgcagccttcaaacctaggtgatgctaagctgtggattca
tggaaaggaaacatatgctaattagctataatacctagtagctacagagt
tctttatactccagacaaaaattaaatgaaaatagactaggcttgataat
gtcacttccctgacactcctatttacagtcctttgcccagacaggcacat
cttcctggccttactggcactaccctagccattgtctagactttctttct
tctgggcctttgcatagattactctctctatccttctctggccttttaga
tcactttctcgttgtttcctgggtcccacactctagccacaacccctgct
tcgaagagcagtatgttgttgtgttccatccttttcctacaaaggctatg
agcacctcgaggggagccaccaagtggttcccatcaatcttcctcaaggg
cccccctaattcctcccactggcaatatatgagtctaacttttaaattga
ctccaattgccatcagcattggaatttccctctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_154812417_154812648
seq2: B6Ng01-287H22.b_53_284

seq1  TTACACTATTCCTTGTAAGTCAGTACAGTCTTTGTTGGTCAAAAATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTATTCCTTGTAAGTCAGTACAGTCTTTGTTGGTCAAAAATTGTT  50

seq1  TGAATTCTTATTTAGTATTAACTGATGTGTTATGAATCACAGAGAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTTATTTAGTATTAACTGATGTGTTATGAATCACAGAGAAACAT  100

seq1  TTATGCACATATCTCTGATGTTAGACTATCTCAAATGAACAGGTGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACATATCTCTGATGTTAGACTATCTCAAATGAACAGGTGAAAAC  150

seq1  ACAACAAAATAACACTAAAGTTTGAACCTCTGTTCTTAAGATTCTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAATAACACTAAAGTTTGAACCTCTGTTCTTAAGATTCTGTGTG  200

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  232
      ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  232

seq1: chr1_155003172_155004355
seq2: B6Ng01-287H22.g_68_1253 (reverse)

seq1  GTGAGAGGAAAATCCAAATGCTGATAGCAAATGTGAGAGCCAAAATAAAA  50
      |||||||| |||| | ||||||||| |||| ||   ||| |||  |||||
seq2  GTGAGAGGGAAATTCCAATGCTGATGGCAATTG---GAGTCAATTTAAAA  47

seq1  G-TAGACTCATATATGCACAGTGGGGGAAATAAGGGGGGGCCCTGGAGG-  98
      | |||||||||||||   ||||||| | ||| | |||||||||| |||| 
seq2  GTTAGACTCATATATTGCCAGTGGGAGGAATTA-GGGGGGCCCTTGAGGA  96

seq1  AGA-TGATGGGA--CACGTGGT-GCT-CCCTCGA-GTGCTTCATAG-CTT  141
      ||| ||||||||  ||| |||| ||| ||||||| |||| |||||| |||
seq2  AGATTGATGGGAACCACTTGGTGGCTCCCCTCGAGGTGC-TCATAGCCTT  145

seq1  TGTAGGAAAAGGGATGAACACAAC-ACATACTGCTCCTTCGAAGCAGGGG  190
      ||||||||||||   ||||||||| |||||||||| ||||||||||||||
seq2  TGTAGGAAAAGGATGGAACACAACAACATACTGCT-CTTCGAAGCAGGGG  194

seq1  TTGTGGCTAGAGTGTGGGAACCAGGAAAACAACGAGAAAGTGATCTAAAA  240
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  TTGTGGCTAGAGTGTGGGACCCAGG-AAACAACGAGAAAGTGATCTAAAA  243

seq1  GGCCAGAGAAGGATAGAAGAGAGTAATCTATGCAAAGGCCCAGAAGAAAG  290
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCCAGAGAAGGATAG-AGAGAGTAATCTATGCAAAGGCCCAGAAGAAAG  292

seq1  AAAGTCTAGACAATGGCTAGGGTAGTGCCAGTAAGGCCAGGAAGATGTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAGACAATGGCTAGGGTAGTGCCAGTAAGGCCAGGAAGATGTGC  342

seq1  CTGTCTGGGCAAAGGACTGTAAATAGGAGTGTCAGGGAAGTGACATTATC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGGCAAAGGACTGTAAATAGGAGTGTCAGGGAAGTGACATTATC  392

seq1  AAGCCTAGTCTATTTTCATTTAATTTTTGTCTGGAGTATAAAGAACTCTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGTCTATTTTCATTTAATTTTTGTCTGGAGTATAAAGAACTCTG  442

seq1  TAGCTACTAGGTATTATAGCTAATTAGCATATGTTTCCTTTCCATGAATC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTAGGTATTATAGCTAATTAGCATATGTTTCCTTTCCATGAATC  492

seq1  CACAGCTTAGCATCACCTAGGTTTGAAGGCTGCAATCCAATGGTCTGTAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTAGCATCACCTAGGTTTGAAGGCTGCAATCCAATGGTCTGTAT  542

seq1  TCAGTCAGAACTAACATTTTCTACTGCTGCAAACTGCCGGTCAGGGGCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGAACTAACATTTTCTACTGCTGCAAACTGCCGGTCAGGGGCAT  592

seq1  GCATTTCTGGTTATTCGTGCTGAACCCAGAATCAGACTTCAGGAACCAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTGGTTATTCGTGCTGAACCCAGAATCAGACTTCAGGAACCAAA  642

seq1  CAGAACCAAGTGGACTTGTGGATAGAGATGCCCCATCTTTTTCTACTATC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCAAGTGGACTTGTGGATAGAGATGCCCCATCTTTTTCTACTATC  692

seq1  CATGTCCCCAAACCAGGATCCTCATGATGAAGGCCAAACCAGAGGGAGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCCAAACCAGGATCCTCATGATGAAGGCCAAACCAGAGGGAGGA  742

seq1  GAAACAGGACATTTTAAACTGACTTGTTGAAACTCCTACTTTATAACTCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGACATTTTAAACTGACTTGTTGAAACTCCTACTTTATAACTCC  792

seq1  AGTTCTGTGGAGACGGAGGCAGGAGAACATTTGAGGCTAGCCTGAGCTAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTGGAGACGGAGGCAGGAGAACATTTGAGGCTAGCCTGAGCTAC  842

seq1  ATAACAAGGCCTTGTCTCAAAACCAAAACAATAAAGCACACAATAATACT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGGCCTTGTCTCAAAACCAAAACAATAAAGCACACAATAATACT  892

seq1  AAACAAAAACAAAAAAAGCAAAACAAACAAACAAAAAAATCAGGGAGAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACAAAAAAAGCAAAACAAACAAACAAAAAAATCAGGGAGAAA  942

seq1  GGAGGAGAATAGAAAGGCAGAGGGGGAAGGAGGCTTATACTGAAGTCATT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAATAGAAAGGCAGAGGGGGAAGGAGGCTTATACTGAAGTCATT  992

seq1  CACCAAACCATACATGTTCCTAGCACACTGTTTTTCTACTACAAAAGCGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAACCATACATGTTCCTAGCACACTGTTTTTCTACTACAAAAGCGA  1042

seq1  AATGATGCATAAAACATTAACAGTGTCAAACCAGGAAAGGTCTTGGGGGG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGCATAAAACATTAACAGTGTCAAACCAGGAAAGGTCTTGGGGGG  1092

seq1  ACGGTCCTTGAGACAAGTGGCCCAGACAGCTGCCTAAACTCATCAACAAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCTTGAGACAAGTGGCCCAGACAGCTGCCTAAACTCATCAACAAT  1142

seq1  ATTTCAATACCAGCAAACAGCCAAAAAGCCACTGGCCAGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATACCAGCAAACAGCCAAAAAGCCACTGGCCAGAATTC  1186