BAC Information

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BAC

Clone NameB6Ng01-287M17
Chromosome1 (Build37)
Map Location 177,561,958 - 177,734,278
singlet/doubletdoublet
Overlap geneKmo, Opn3, Chml, Wdr64
Upstream geneFmn2, Grem2, Rgs7, Fh1
Downstream geneExo1, Gm104, Pld5, B020018G12Rik, Cep170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287M17.bB6Ng01-287M17.g
ACCGA085621GA085622
length1,117811
definitionB6Ng01-287M17.b B6Ng01-287M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,733,160 - 177,734,278)(177,561,958 - 177,562,768)
sequence
gaattctaccctcataaatgaaattagtgcctgccttagtctatttctct
tttctataactgacagcatgatgtactgagactgagagattcaaaacgag
atggtcttatagggtgaggtcctccattgctagtaggggctctctactga
gtcctaaggctgttcagcagcatcataggacaaggcaaatttatccttac
tcgtgacgtttatcctttaactttctatatttattgagtgtgtgtgtgtg
cgcatggattcttgtgtggaggttagaggataatttgtggaagttggttt
cctctctattatgtatgtttccaagcccaagcagatcatcaggctcagca
acaagtgcctttgctctctgagccatcttgccagccctctcgtcttatga
accacagtctcatacatcagcaccctaccttacagcctcatgtcattacc
ttggatacttcttaggagtcctaacctctaaatatcactgtcaaattgag
ctcttgttctcttaatgccttacgtcggtgatgaaaatttaacaggagtt
ttagaaggaacatttaaattatagtagtgtccctaacaaaagagttctga
tggagctggttgaccctttccacggtgtcatggtttagatatagaatatg
cctaaaggctaatgtgttggaggtttggtctctagttggtggcactagag
agacttgatgggatcatgcacacactgatcttattaatggatcagttctc
agaaaataggttggaaaggaagcagggtagagttttactggtcactgggg
ccatgcctttgaaagtcatgtcatagatcctttttgcatatgtttctcag
cctctagaagtgaacattttcttccaccatgcccctccatcaggaggctc
tctctcactgccggcctaaaaacaaggatgctccaccactcaggactgaa
gtctcggatgctcttgggcctaagtagcccattccttgcaggaccctgat
gtgctcaagaggaaaagcacttgtgctcagctgatgacagaagtctgata
tcctctgagtgaaatgaaagactgacctcatgaagttgtccctctgacct
ctacatgtgcaccatag
gaattcaggtcatctccctctgagaaagggaagacgcttcagaaccccag
ataacacaagtttcattcaaagccacatttcgaatgaaaacgaaactgac
acacaccacagaaggagaagaagaaaagccccgaggatgctatttaaaca
gaaaaggtgtctcatatgagactgggtttttgaaattttggttatcgcgg
tgaattgtctccgagagccaagctgattagactttgagcttctagtgagt
taaacacttatcagaggaagtgagctttgaccaaaccttgcttctggctc
acaaaggctctggacttctggcaataaaaagatcgcaaaacatcagcatg
taggacagagagttccgacctgaacagaggtgttctggaagctatggcat
cgtctgatactcaggggaaaagagtggctgttattggcggtggtttggtg
agactgcccaggcgtttactgctctttgggcatttatttttattattatt
atctcactaatgatttttttattgtgtgtgggttgttgattctgatagtt
aaaccttttaaggtttaaatatatttgctataaatatggtattgcttttc
actacagttattaatacacactgatcgctgacatttctatgaataccatg
tccagtactgattatgtctctctacccttccacactcttccgtctcccac
atctcctcagtctctcttaaaattttaggtcttctttcttcttcttctct
ccctctcttacctctccccaccccatgtatgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_177733160_177734278
seq2: B6Ng01-287M17.b_46_1162 (reverse)

seq1  CCATGGTGCACATGTAGAGGTCAGA-GGACAACTTCATGGAGTCAGTTCT  49
      | ||||||||||||||||||||||| |||||||||||||  ||||| |||
seq2  CTATGGTGCACATGTAGAGGTCAGAGGGACAACTTCATGAGGTCAG-TCT  49

seq1  TTCATTTCACATTCAGAGG--ATCAGACTCCTGTCATCAGGCTGAGCAAC  97
      ||||||||||  |||||||  |||||||| ||||||||| ||||||| ||
seq2  TTCATTTCAC--TCAGAGGATATCAGACTTCTGTCATCA-GCTGAGC-AC  95

seq1  AAGTGCCTTTTCCCTCTGAGCCACATCAGGGTCCTGCAAGGAATGGGCTA  147
      ||||| |||||||   |||| |||||||||||||||||||||||||||||
seq2  AAGTG-CTTTTCCTCTTGAG-CACATCAGGGTCCTGCAAGGAATGGGCTA  143

seq1  CTTAGGCCC-AGAGCATCCGAGACTTCAGTCCTGAGTGGTGGAGCATCCT  196
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCCCAAGAGCATCCGAGACTTCAGTCCTGAGTGGTGGAGCATCCT  193

seq1  TGTTTTTAGGCCGGCAGTGAGAGAGAGCCTCCTGATGGAGGGGCATGGTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAGGCCGGCAGTGAGAGAGAGCCTCCTGATGGAGGGGCATGGTG  243

seq1  GAAGAAAATGTTCACTTCTAGAGGCTGAGAAACATATGCAAAAAGGATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATGTTCACTTCTAGAGGCTGAGAAACATATGCAAAAAGGATCT  293

seq1  ATGACATGACTTTCAAAGGCATGGCCCCAGTGACCAGTAAAACTCTACCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGACTTTCAAAGGCATGGCCCCAGTGACCAGTAAAACTCTACCC  343

seq1  TGCTTCC-TTCCAACCTATTTTCTGAGAACTGATCCATTAATAAGATCAG  395
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTTCCAACCTATTTTCTGAGAACTGATCCATTAATAAGATCAG  393

seq1  TGTGTGCATGATCCCATCAAGTCTCTCTAGTGCCACCAACTAGAGACCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGATCCCATCAAGTCTCTCTAGTGCCACCAACTAGAGACCAA  443

seq1  ACCTCCAACACATTAGCCTTTAGGCATATTCTATATCTAAACCATGACAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAACACATTAGCCTTTAGGCATATTCTATATCTAAACCATGACAC  493

seq1  CGTGGAAAGGGTCAACCAGCTCCATCAGAACTCTTTTGTTAGGGACACTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAAGGGTCAACCAGCTCCATCAGAACTCTTTTGTTAGGGACACTA  543

seq1  CTATAATTTAAATGTTCCTTCTAAAACTCCTGTTAAATTTTCATCACCGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTTAAATGTTCCTTCTAAAACTCCTGTTAAATTTTCATCACCGA  593

seq1  CGTAAGGCATTAAGAGAACAAGAGCTCAATTTGACAGTGATATTTAGAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGGCATTAAGAGAACAAGAGCTCAATTTGACAGTGATATTTAGAGG  643

seq1  TTAGGACTCCTAAGAAGTATCCAAGGTAATGACATGAGGCTGTAAGGTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTCCTAAGAAGTATCCAAGGTAATGACATGAGGCTGTAAGGTAG  693

seq1  GGTGCTGATGTATGAGACTGTGGTTCATAAGACGAGAGGGCTGGCAAGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGATGTATGAGACTGTGGTTCATAAGACGAGAGGGCTGGCAAGAT  743

seq1  GGCTCAGAGAGCAAAGGCACTTGTTGCTGAGCCTGATGATCTGCTTGGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGAGCAAAGGCACTTGTTGCTGAGCCTGATGATCTGCTTGGGC  793

seq1  TTGGAAACATACATAATAGAGAGGAAACCAACTTCCACAAATTATCCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACATACATAATAGAGAGGAAACCAACTTCCACAAATTATCCTCT  843

seq1  AACCTCCACACAAGAATCCATGCGCACACACACACACTCAATAAATATAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCACACAAGAATCCATGCGCACACACACACACTCAATAAATATAG  893

seq1  AAAGTTAAAGGATAAACGTCACGAGTAAGGATAAATTTGCCTTGTCCTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAAGGATAAACGTCACGAGTAAGGATAAATTTGCCTTGTCCTAT  943

seq1  GATGCTGCTGAACAGCCTTAGGACTCAGTAGAGAGCCCCTACTAGCAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGCTGAACAGCCTTAGGACTCAGTAGAGAGCCCCTACTAGCAATG  993

seq1  GAGGACCTCACCCTATAAGACCATCTCGTTTTGAATCTCTCAGTCTCAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTCACCCTATAAGACCATCTCGTTTTGAATCTCTCAGTCTCAGT  1043

seq1  ACATCATGCTGTCAGTTATAGAAAAGAGAAATAGACTAAGGCAGGCACTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGCTGTCAGTTATAGAAAAGAGAAATAGACTAAGGCAGGCACTA  1093

seq1  ATTTCATTTATGAGGGTAGAATTC  1119
      ||||||||||||||||||||||||
seq2  ATTTCATTTATGAGGGTAGAATTC  1117

seq1: chr1_177561958_177562768
seq2: B6Ng01-287M17.g_68_878

seq1  GAATTCAGGTCATCTCCCTCTGAGAAAGGGAAGACGCTTCAGAACCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCATCTCCCTCTGAGAAAGGGAAGACGCTTCAGAACCCCAG  50

seq1  ATAACACAAGTTTCATTCAAAGCCACATTTCGAATGAAAACGAAACTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAAGTTTCATTCAAAGCCACATTTCGAATGAAAACGAAACTGAC  100

seq1  ACACACCACAGAAGGAGAAGAAGAAAAGCCCCGAGGATGCTATTTAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACAGAAGGAGAAGAAGAAAAGCCCCGAGGATGCTATTTAAACA  150

seq1  GAAAAGGTGTCTCATATGAGACTGGGTTTTTGAAATTTTGGTTATCGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTGTCTCATATGAGACTGGGTTTTTGAAATTTTGGTTATCGCGG  200

seq1  TGAATTGTCTCCGAGAGCCAAGCTGATTAGACTTTGAGCTTCTAGTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTCTCCGAGAGCCAAGCTGATTAGACTTTGAGCTTCTAGTGAGT  250

seq1  TAAACACTTATCAGAGGAAGTGAGCTTTGACCAAACCTTGCTTCTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTTATCAGAGGAAGTGAGCTTTGACCAAACCTTGCTTCTGGCTC  300

seq1  ACAAAGGCTCTGGACTTCTGGCAATAAAAAGATCGCAAAACATCAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCTCTGGACTTCTGGCAATAAAAAGATCGCAAAACATCAGCATG  350

seq1  TAGGACAGAGAGTTCCGACCTGAACAGAGGTGTTCTGGAAGCTATGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGAGAGTTCCGACCTGAACAGAGGTGTTCTGGAAGCTATGGCAT  400

seq1  CGTCTGATACTCAGGGGAAAAGAGTGGCTGTTATTGGCGGTGGTTTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGATACTCAGGGGAAAAGAGTGGCTGTTATTGGCGGTGGTTTGGTG  450

seq1  AGACTGCCCAGGCGTTTACTGCTCTTTGGGCATTTATTTTTATTATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCCAGGCGTTTACTGCTCTTTGGGCATTTATTTTTATTATTATT  500

seq1  ATCTCACTAATGATTTTTTTATTGTGTGTGGGTTGTTGATTCTGATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTAATGATTTTTTTATTGTGTGTGGGTTGTTGATTCTGATAGTT  550

seq1  AAACCTTTTAAGGTTTAAATATATTTGCTATAAATATGGTATTGCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTTAAGGTTTAAATATATTTGCTATAAATATGGTATTGCTTTTC  600

seq1  ACTACAGTTATTAATACACACTGATCGCTGACATTTCTATGAATACCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTTATTAATACACACTGATCGCTGACATTTCTATGAATACCATG  650

seq1  TCCAGTACTGATTATGTCTCTCTACCCTTCCACACTCTTCCGTCTCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACTGATTATGTCTCTCTACCCTTCCACACTCTTCCGTCTCCCAC  700

seq1  ATCTCCTCAGTCTCTCTTAAAATTTTAGGTCTTCTTTCTTCTTCTTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCAGTCTCTCTTAAAATTTTAGGTCTTCTTTCTTCTTCTTCTCT  750

seq1  CCCTCTCTTACCTCTCCCCACCCCATGTATGTGTGTGTGTGTGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTTACCTCTCCCCACCCCATGTATGTGTGTGTGTGTGTGTGTGT  800

seq1  GTGTGTGTGTG  811
      |||||||||||
seq2  GTGTGTGTGTG  811