BAC Information

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BAC

Clone NameB6Ng01-287M24
Chromosome1 (Build37)
Map Location 167,978,001 - 168,159,985
singlet/doubletdoublet
Overlap geneDusp27, Gpa33, Mael
Upstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409
Downstream geneLOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287M24.bB6Ng01-287M24.g
ACCGA085635GA085636
length1,131615
definitionB6Ng01-287M24.b B6Ng01-287M24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(167,978,001 - 167,979,137)(168,159,373 - 168,159,985)
sequence
gaattcaaatcagagcgtttcgctctgctacttccgtgacaggggaaaca
gaaggcgattagattagacgcagcttcaggaagcacgctacactttatac
ggcgaggtaaaagtggttctgcgcaattgtactgcttttctttaatgtca
tgccaggactcaagatccttacaggaaaaactcctatggggtcgcgggag
ggggagactgagacgcagctcagtagtagactacgtggtcggcgtgaaca
gagccctggctacgatccccacggaagaataaaacaagcaagcaagcaaa
caaaaaagttttccactcataagtacaaagatcagcatggctacacgcat
taaaacctcccgtgtctttaaaggcacagttggtaatgaaggtaggcaat
gtctcacgtgttgtgtctcctccatccccttgtcgcccctccccgccccc
cagctcaccactgatctagtgtttactctgtcacaccgagagggagctaa
ttcttgcttgcatctctcagttatgtcctctgtggagcacttcctggctc
catttctatttgatttcttgcttgagtgtaagttgtcagtcagtcactcc
atcagcctgcaggcgctcgctccagccttcggtcccgtcttccttggcat
gggctagtccgttttgcagtccctgggctgtaaaatgagtgggtgatcgg
ggtgactgcgaagaaagggttcgcacccctgcctggtggtcacatgtgcc
ctttctggtgcccctgcggtggctttttatgaagcagatctccaccccta
tgactgttacctcctgggtcttatcgcgatcttcttctgccttttgccct
ccgtctgatttcgaggaggagactgctgactttcaccggtgtattttaga
acggcaaaccatacccagctcttgcgtttacacagacagtagcaggcttg
ctaactcacacacatgtggaatcatgttagcgctggagtgctgcccggag
gtctgggtattttctgtgtcaagaaggaatgaggaaggcaaagggaagag
acatgatgataagaatgtgtaaaggaaacggccctagaaggtgactttac
tgttcactcacctcacttagggaaaatcttc

gaattcattagctacttaccaacttaaagactaccaactggtaacgtgtt
ttgtgtcctgggtagtggtggctcacacctttaatcctgatgcagaggta
gaggcagaagcagaaggatctctgatttcaaggccagcctggtttacaga
gtgagttccagagtaaccaaggctacgacagagaaccctgtctcaaaaca
aaaacaaaaacaaaacaggcgacaaaacttgtttttgcactctagagaaa
agccaacatggtaaccataggcctcttaattgttgtttggcttgctcatg
ctttgtcctagcgtctgtacgtttatgatgctgttgacgtcttacttggt
tgccaggtttactttctatgacgaaagatgatggaaatgggttgggatat
gttttgttttgttttgttttttaagtgtgttttctggttctgcagaaggt
atttaataaaattgttatttctttgaacaggagttacctagtttgtttaa
agacttgtgttagtaattgtagtataattatgtttatttggagaggtccc
accagtgcccgacaaatagagaggtggatcctcaaagccctaccattgga
ctgagcactgagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_167978001_167979137
seq2: B6Ng01-287M24.b_48_1178

seq1  GAATTCAAATCAGAGCGTTTCGCTCTGCTACTTCCGTGACAGGGGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCAGAGCGTTTCGCTCTGCTACTTCCGTGACAGGGGAAACA  50

seq1  GAAGGCGATTAGATTAGACGCAGCTTCAGGAAGCACGCTACACTTTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCGATTAGATTAGACGCAGCTTCAGGAAGCACGCTACACTTTATAC  100

seq1  GGCGAGGTAAAAGTGGTTCTGCGCAATTGTACTGCTTTTCTTTAATGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGGTAAAAGTGGTTCTGCGCAATTGTACTGCTTTTCTTTAATGTCA  150

seq1  TGCCAGGACTCAAGATCCTTACAGGAAAAACTCCTATGGGGTCGCGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGACTCAAGATCCTTACAGGAAAAACTCCTATGGGGTCGCGGGAG  200

seq1  GGGGAGACTGAGACGCAGCTCAGTAGTAGACTACGTGGTCGGCGTGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACTGAGACGCAGCTCAGTAGTAGACTACGTGGTCGGCGTGAACA  250

seq1  GAGCCCTGGCTACGATCCCCACGGAAGAATAAAACAAGCAAGCAAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGGCTACGATCCCCACGGAAGAATAAAACAAGCAAGCAAGCAAA  300

seq1  CAAAAAAGTTTTCCACTCATAAGTACAAAGATCAGCATGGCTACACGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGTTTTCCACTCATAAGTACAAAGATCAGCATGGCTACACGCAT  350

seq1  TAAAACCTCCCGTGTCTTTAAAGGCACAGTTGGTAATGAAGGTAGGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTCCCGTGTCTTTAAAGGCACAGTTGGTAATGAAGGTAGGCAAT  400

seq1  GTCTCACGTGTTGTGTCTCCTCCATCCCCTTGTCGCCCCTCCCCGCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACGTGTTGTGTCTCCTCCATCCCCTTGTCGCCCCTCCCCGCCCCC  450

seq1  CAGCTCACCACTGATCTAGTGTTTACTCTGTCACACCGAGAGGGAGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACCACTGATCTAGTGTTTACTCTGTCACACCGAGAGGGAGCTAA  500

seq1  TTCTTGCTTGCATCTCTCAGTTATGTCCTCTGTGGAGCACTTCCTGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTTGCATCTCTCAGTTATGTCCTCTGTGGAGCACTTCCTGGCTC  550

seq1  CATTTCTATTTGATTTCTTGCTTGAGTGTAAGTTGTCAGTCAGTCACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATTTGATTTCTTGCTTGAGTGTAAGTTGTCAGTCAGTCACTCC  600

seq1  ATCAGCCTGCAGGCGCTCGCTCCAGCCTTCGGTCCCGTCTTCCTTGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTGCAGGCGCTCGCTCCAGCCTTCGGTCCCGTCTTCCTTGGCAT  650

seq1  GGGCTAGTCCGTTTTGCAGTCCCTGGGCTGTAAAATGAGTGGGTGATCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGTCCGTTTTGCAGTCCCTGGGCTGTAAAATGAGTGGGTGATCGG  700

seq1  GGTGACTGCGAAG-AAGGGTTCGCACCCCTGCCTGGTGGTCACATGTGCC  749
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTGACTGCGAAGAAAGGGTTCGCACCCCTGCCTGGTGGTCACATGTGCC  750

seq1  C-TTCTGGTGCCCCTGCGGTGGCTTTTTATGAAGCAGATCTCCACCCCTA  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGTGCCCCTGCGGTGGCTTTTTATGAAGCAGATCTCCACCCCTA  800

seq1  TGACTGTTACCTCCTGGGTCTTATCGCGATCTTCTTCTGCCTTTTGCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTACCTCCTGGGTCTTATCGCGATCTTCTTCTGCCTTTTGCCCT  850

seq1  CCGTCTGATTTCGAGGAGGAGACTGCTGACTTTCACCGGTGTATTTCAGA  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCGTCTGATTTCGAGGAGGAGACTGCTGACTTTCACCGGTGTATTTTAGA  900

seq1  ACGGCAAACCAAACCCAGCTCTTGCGTTTACACAGACAGTAGCAGGC-TG  947
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  ACGGCAAACCATACCCAGCTCTTGCGTTTACACAGACAGTAGCAGGCTTG  950

seq1  CTAACTCACAACACATGTGGAATCATGTTAGCGCTGGAGTGCTGCCCCGG  997
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  CTAACTCAC-ACACATGTGGAATCATGTTAGCGCTGGAGTGCTG-CCCGG  998

seq1  AAGTCTTGGGTA-TTTCTGTGTCAAAGAAAGGGAAAGAAGGAAGGGAAAA  1046
      | ||| |||||| |||||||||| |||||  |||| | ||||||| ||| 
seq2  AGGTC-TGGGTATTTTCTGTGTC-AAGAA--GGAATG-AGGAAGGCAAAG  1043

seq1  GGAGAGAAGACAATGAATGAATAAAGATTGTGTTAAAAGGAAACG--CCT  1094
      ||| || |||| ||| ||||   |||| |||||  ||||||||||  |||
seq2  GGA-AG-AGAC-ATG-ATGA--TAAGAATGTGT--AAAGGAAACGGCCCT  1085

seq1  AGAAGGTGACTTTACTGTTCACTCA-CTCACT--AGGAAAATCTTC  1137
      ||||||||||||||||||||||||| ||||||   |||||||||||
seq2  AGAAGGTGACTTTACTGTTCACTCACCTCACTTAGGGAAAATCTTC  1131


seq1: chr1_168159373_168159985
seq2: B6Ng01-287M24.g_65_679 (reverse)

seq1  GGGCTCTGTGCTCAGTCCAATGGTA-GGCTTTGAGGATCCACCTCTCTAT  49
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGCTCAGTGCTCAGTCCAATGGTAGGGCTTTGAGGATCCACCTCTCTAT  50

seq1  TTGTCGGGCACTGGTGGGACCTCTCCAAATAAACATAATTATACTACAAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGGGCACTGGTGGGACCTCTCCAAATAAACATAATTATACTACAAT  100

seq1  TACTAACACAAGTCTTTAAAC-AACTAGGTAACTCCTGTTCAAAGAAATA  148
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACTAACACAAGTCTTTAAACAAACTAGGTAACTCCTGTTCAAAGAAATA  150

seq1  ACAATTTTATTAAATACCTTCTGCAGAACCAGAAAACAAACTTAAAAAAC  198
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAATTTTATTAAATACCTTCTGCAGAACCAGAAAACACACTTAAAAAAC  200

seq1  AAAACAAAACAAAACATATCCCAACCCATTTCCATCATCTTTCGTCATAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACATATCCCAACCCATTTCCATCATCTTTCGTCATAG  250

seq1  AAAGTAAACCTGGCAACCAAGTAAGACGTCAACAGCATCATAAACGTACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACCTGGCAACCAAGTAAGACGTCAACAGCATCATAAACGTACA  300

seq1  GACGCTAGGACAAAGCATGAGCAAGCCAAACAACAATTAAGAGGCCTATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTAGGACAAAGCATGAGCAAGCCAAACAACAATTAAGAGGCCTATG  350

seq1  GTTACCATGTTGGCTTTTCTCTAGAGTGCAAAAACAAGTTTTGTCGCCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATGTTGGCTTTTCTCTAGAGTGCAAAAACAAGTTTTGTCGCCTG  400

seq1  TTTTGTTTTTGTTTTTGTTTTGAGACAGGGTTCTCTGTCGTAGCCTTGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGTTTTTGTTTTGAGACAGGGTTCTCTGTCGTAGCCTTGGT  450

seq1  TACTCTGGAACTCACTCTGTAAACCAGGCTGGCCTTGAAATCAGAGATCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGGAACTCACTCTGTAAACCAGGCTGGCCTTGAAATCAGAGATCC  500

seq1  TTCTGCTTCTGCCTCTACCTCTGCATCAGGATTAAAGGTGTGAGCCACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCTGCCTCTACCTCTGCATCAGGATTAAAGGTGTGAGCCACCA  550

seq1  CTACCCAGGACACAAAACACGTTACCAGTTGGTAGTCTTTAAGTTGGTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGGACACAAAACACGTTACCAGTTGGTAGTCTTTAAGTTGGTAA  600

seq1  GTAGCTAATGAATTC  613
      |||||||||||||||
seq2  GTAGCTAATGAATTC  615


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