BAC Information

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BAC

Clone NameB6Ng01-288D07
Chromosome1 (Build37)
Map Location 168,699,511 - 168,841,992
singlet/doubletdoublet
Overlap geneLOC240895
Upstream geneCreg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288D07.bB6Ng01-288D07.g
ACCGA085931GA085932
length1,1581,166
definitionB6Ng01-288D07.b B6Ng01-288D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,699,511 - 168,700,603)(168,840,827 - 168,841,992)
sequence
gaattcatgcagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cggtgaaactcccgtcccgagtttcctcccgggttttttcttcccggatt
ttttctcgtcccggaatttctcgtcccggatttcagcaccaattcttaat
agcgttctcacgcccggccaggaagaacacaacagaccagaatcttctgc
ggcaaaactttattgtttacatcttcaggagctaggagcgcaaaccccca
gccccaaaagcgaaagccacccctctaatgaaaccgaaacccctttccta
tttaggagagttatatttcgcctaggacgcatcactccctgattggctgc
agcccatggccgagctgacgttcacgggaaaggcagagtacaagtagtcg
taaaatacccttggcacatgcgcagattatttgtttaccacttagaacac
aggatgtcagcgccatcttgtgacggcgaatgtgggggcggctcccaaca
gccagagaaaggggagctgggatcaaaaccaatgtggataaagaggatgg
agaggcccgtgaaagagatgaaatccgtcatgacaagagaaaagagaggc
agcatgaccggaacctttccagagcagctcctgagaagaggtcaaaacca
cagacaaatgaaaatggagatatcagtgaagtcattgctcttgttgtgcc
caatcctagagtttccaatgaagttcagtatgaccaaagacttttcaacc
aattccagggtatggacagtggatttgcaggtggacaagacgagatttac
aatattttattgatgaggcctggaaaggtggcaaagatacagatcagagt
acctacaggcccaataaacatctggacaaatcatgtatggtgatgacctt
cgaaaccaggataaagaccaacaggattgtgttccctgataaggtgtttt
ctggtttcagaccatagacagaggagccgagagatccagtttcatttgag
gaaaggtcctttggtttgggacaagttttgggaagaagcccaaacagcac
catggctccttaaaagaaccctctgtagccagtcaccccaattgtaacac
aagcctga
gaattcagttaggaatctgggataggaggaaatcaaggtctttgaggaat
ggaacttcagaaagacatcgggaagagagaaaggctaaagaatcaggatt
gtactgattatgggtctggagagaaggctcagcactgaagagcactgact
gctcttccagaagtcctgagttcaattcccagcaaccacatggtggctca
caaccatctgtaatgggatctgatgtcctcttctggtgtgtctgaagaga
gtgacagtgtactcatacacataaaataaatatatctaaaaaaaaaaaaa
aaagattgtactgattgtctggattggctggccaccaagtcccctggatc
ttcctgtcccttcattctatcaaattccaaatgtgagccattaggcctgg
ctttttacgtgagtgctgggatctaactcaggtcctcatgcttgcacaag
ccctctaacccagtgcattgtctcttcggcctcgtttctacttagttttg
atgtggcactatgtgaagaccagcctgaaaggaagcgcagttttattctg
acttcaaatataaaattcatgtccctgcaagactattgtgagggattagg
gaaccctgagtttaaaatatctttgtaatggagacgtttcagaacagaca
gccattgtgtgcttagctgtaattactgagccttctatgtaccacacact
ggcctgggcatttgagaccacagaaggtgagtatgaagcccacagtggct
cggcaccaaaggtcttgtgaaagagtctgggcatttggtttacactggta
atctcagaactcaggaagtagaggcaggaggatcagaaggccctggcaac
acagcaagctgaagtttaactgggacacatgaaactctgttatcacaaac
aaacaaacaaacaactaataagcaaacaagtctatgactgcacatgatct
tgtatgcaacttgaaaattgtcaggtactataatttgtatcgaactatat
ggagatcagaaccatctggtgtaaggatcccgccagattcaagtctgttc
caagctggaggtctcagaagggattgattttattttctgcggtttcctga
ttgagactgagtctgccaagagggaaaggaacttaggctgtgataatcct
tactaccttactaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168699511_168700603
seq2: B6Ng01-288D07.b_96_1202

seq1  TTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCC  50

seq1  GGTGAAACTCCCGTCCCGAGTTTCCTCCCGGGTTTTTTCTTCCCGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAACTCCCGTCCCGAGTTTCCTCCCGGGTTTTTTCTTCCCGGATTT  100

seq1  TTTCTCGTCCCGGAATTTCTCGTCCCGGATTTCAGCACCAATTCTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCGTCCCGGAATTTCTCGTCCCGGATTTCAGCACCAATTCTTAATA  150

seq1  GCGTTCTCACGCCCGGCCAGGAAGAACACAACAGACCAGAATCTTCTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTCACGCCCGGCCAGGAAGAACACAACAGACCAGAATCTTCTGCG  200

seq1  GCAAAACTTTATTGTTTACATCTTCAGGAGCTAGGAGCGCAAACCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTTTATTGTTTACATCTTCAGGAGCTAGGAGCGCAAACCCCCAG  250

seq1  CCCCAAAAGCGAAAGCCACCCCTCTAATGAAACCGAAACCCCTTTCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAGCGAAAGCCACCCCTCTAATGAAACCGAAACCCCTTTCCTAT  300

seq1  TTAGGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCA  350

seq1  GCCCATGGCCGAGCTGACGTTCACGGGAAAGGCAGAGTACAAGTAGTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGGCCGAGCTGACGTTCACGGGAAAGGCAGAGTACAAGTAGTCGT  400

seq1  AAAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACA  450

seq1  GGATGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAG  500

seq1  CCAGAGAAAGGGGAGCTGGGATCAAAACCAATGTGGATAAAGAGGATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAAAGGGGAGCTGGGATCAAAACCAATGTGGATAAAGAGGATGGA  550

seq1  GAGGCCCGTGAAAGAGATGAAATCCGTCATGACAAGAGAAAAGAGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCGTGAAAGAGATGAAATCCGTCATGACAAGAGAAAAGAGAGGCA  600

seq1  GCATGACCGGAACCTTTCCAGAGCAGCTCCTGAGAAGAGGTCAAAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACCGGAACCTTTCCAGAGCAGCTCCTGAGAAGAGGTCAAAACCAC  650

seq1  AGACAAATGAAAATGGAGATATCAGTGAAGTCATTGCTCTTGTTGTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATGAAAATGGAGATATCAGTGAAGTCATTGCTCTTGTTGTGCCC  700

seq1  AATCCTAGAGTTTCCAATGAAGTTCAGTATGACCAAAGACTTTTCAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGAGTTTCCAATGAAGTTCAGTATGACCAAAGACTTTTCAACCA  750

seq1  ATTCCAGGGTATGGACAGTGGATTTGCAGGTGGACAAGACGAGATTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGGTATGGACAGTGGATTTGCAGGTGGACAAGACGAGATTTACA  800

seq1  ATATTT--ATGATGAGGCCTGGAAAGGTGGCAAAGATACAGATCAGAGTA  848
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTGATGAGGCCTGGAAAGGTGGCAAAGATACAGATCAGAGTA  850

seq1  CCTACAGGCCCAATAAACATCTGGACAAATCATGTATGGTGATGACC-TC  897
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTACAGGCCCAATAAACATCTGGACAAATCATGTATGGTGATGACCTTC  900

seq1  GAAACCAGGATAAAGACCAACAG--ATGTGTT-CCTGATAAGGTGTTTTC  944
      |||||||||||||||||||||||   |||||| |||||||||||||||||
seq2  GAAACCAGGATAAAGACCAACAGGATTGTGTTCCCTGATAAGGTGTTTTC  950

seq1  TGG-TTCAGACCATAGACAGAGAGGCCGAGAAGATCCAG-TTCATTTGAG  992
      ||| ||||||||||||||||||  |||||| |||||||| ||||||||||
seq2  TGGTTTCAGACCATAGACAGAGGAGCCGAG-AGATCCAGTTTCATTTGAG  999

seq1  G-AAGGTCCTTTTGGTTTGGACAAGTTTTTGGAAGAAG-CCAAACAGCAC  1040
      | |||||||||| | || ||||||||||| |||||||| |||||||||||
seq2  GAAAGGTCCTTTGGTTTGGGACAAGTTTTGGGAAGAAGCCCAAACAGCAC  1049

seq1  CATGGCTC--TAAAAG-ACACTCTGTTAGCAGTCACCCCA--TGGAACAC  1085
      ||||||||  |||||| || ||||||   |||||||||||  || |||||
seq2  CATGGCTCCTTAAAAGAACCCTCTGTAGCCAGTCACCCCAATTGTAACAC  1099

seq1  AAGCCTGA  1093
      ||||||||
seq2  AAGCCTGA  1107

seq1: chr1_168840827_168841992
seq2: B6Ng01-288D07.g_68_1233 (reverse)

seq1  ACTTAGTAGAGTAGTAAGAATTTATCAACAGCTCTAAG-TCCTTCCCCTC  49
      ||||||||  |||||||| | ||||| ||||| ||||| ||||| |||||
seq2  ACTTAGTAAGGTAGTAAGGA-TTATC-ACAGC-CTAAGTTCCTTTCCCTC  47

seq1  T--GCAGACCTCAGTCCCTCATCAGGAAACCGCAGAAAATAAAATCAATC  97
      |  ||||| ||||||| |  ||||||||||||||||||||||||||||||
seq2  TTGGCAGA-CTCAGTCTC-AATCAGGAAACCGCAGAAAATAAAATCAATC  95

seq1  CCTTCTGAAGACCTCCAGCTTGG-ACAGACTTGAATCTGGCCGGATCCTT  146
      ||||||| ||||||||||||||| ||||||||||||||||| ||||||||
seq2  CCTTCTG-AGACCTCCAGCTTGGAACAGACTTGAATCTGGCGGGATCCTT  144

seq1  ACA-CAGATGGTTCTGATCTCCATATAGTTCGATACAAATTATAGTACCT  195
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGATGGTTCTGATCTCCATATAGTTCGATACAAATTATAGTACCT  194

seq1  GACAATTTCCAAGTTGCATACAAGATCATGTGCAGTCATAGACTTGTTTG  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTTCAAGTTGCATACAAGATCATGTGCAGTCATAGACTTGTTTG  244

seq1  CTTATTAGTTGTTTGTTTGTTTGTTTGTGAT-ACAGAGTTTCATGTGTCC  294
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTATTAGTTGTTTGTTTGTTTGTTTGTGATAACAGAGTTTCATGTGTCC  294

seq1  CAGTTAAACTTCAGCTTGCTGTGTTGCCAGGGCCTTCTGATCCTCCTGCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAACTTCAGCTTGCTGTGTTGCCAGGGCCTTCTGATCCTCCTGCC  344

seq1  TCTACTTCCTGAGTTCTGAGATTACCAGTGTAAACCAAATGCCCAGACTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCCTGAGTTCTGAGATTACCAGTGTAAACCAAATGCCCAGACTC  394

seq1  TTTCACAAGACCTTTGGTGCCGAGCCACTGTGGGCTTCATACTCACCTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAGACCTTTGGTGCCGAGCCACTGTGGGCTTCATACTCACCTTC  444

seq1  TGTGGTCTCAAATGCCCAGGCCAGTGTGTGGTACATAGAAGGCTCAGTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTCAAATGCCCAGGCCAGTGTGTGGTACATAGAAGGCTCAGTAA  494

seq1  TTACAGCTAAGCACACAATGGCTGTCTGTTCTGAAACGTCTCCATTACAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTAAGCACACAATGGCTGTCTGTTCTGAAACGTCTCCATTACAA  544

seq1  AGATATTTTAAACTCAGGGTTCCCTAATCCCTCACAATAGTCTTGCAGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTAAACTCAGGGTTCCCTAATCCCTCACAATAGTCTTGCAGGG  594

seq1  ACATGAATTTTATATTTGAAGTCAGAATAAAACTGCGCTTCCTTTCAGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATTTTATATTTGAAGTCAGAATAAAACTGCGCTTCCTTTCAGGC  644

seq1  TGGTCTTCACATAGTGCCACATCAAAACTAAGTAGAAACGAGGCCGAAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTCACATAGTGCCACATCAAAACTAAGTAGAAACGAGGCCGAAGA  694

seq1  GACAATGCACTGGGTTAGAGGGCTTGTGCAAGCATGAGGACCTGAGTTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGCACTGGGTTAGAGGGCTTGTGCAAGCATGAGGACCTGAGTTAG  744

seq1  ATCCCAGCACTCACGTAAAAAGCCAGGCCTAATGGCTCACATTTGGAATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCACGTAAAAAGCCAGGCCTAATGGCTCACATTTGGAATT  794

seq1  TGATAGAATGAAGGGACAGGAAGATCCAGGGGACTTGGTGGCCAGCCAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAATGAAGGGACAGGAAGATCCAGGGGACTTGGTGGCCAGCCAAT  844

seq1  CCAGACAATCAGTACAATCTTTTTTTTTTTTTTTTAGATATATTTATTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAATCAGTACAATCTTTTTTTTTTTTTTTTAGATATATTTATTTT  894

seq1  ATGTGTATGAGTACACTGTCACTCTCTTCAGACACACCAGAAGAGGACAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGAGTACACTGTCACTCTCTTCAGACACACCAGAAGAGGACAT  944

seq1  CAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTG  994

seq1  AACTCAGGACTTCTGGAAGAGCAGTCAGTGCTCTTCAGTGCTGAGCCTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGACTTCTGGAAGAGCAGTCAGTGCTCTTCAGTGCTGAGCCTTC  1044

seq1  TCTCCAGACCCATAATCAGTACAATCCTGATTCTTTAGCCTTTCTCTCTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGACCCATAATCAGTACAATCCTGATTCTTTAGCCTTTCTCTCTT  1094

seq1  CCCGATGTCTTTCTGAAGTTCCATTCCTCAAAGACCTTGATTTCCTCCTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATGTCTTTCTGAAGTTCCATTCCTCAAAGACCTTGATTTCCTCCTA  1144

seq1  TCCCAGATTCCTAACTGAATTC  1166
      ||||||||||||||||||||||
seq2  TCCCAGATTCCTAACTGAATTC  1166