BAC Information

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BAC

Clone NameB6Ng01-288G17
Chromosome1 (Build37)13 (Build37)
Map Location 162,953,986 - 162,954,11837,666,166 - 37,667,308
singlet/doubletsingletsinglet
Overlap geneZbtb37
Upstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1
Downstream geneGas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288G17.bB6Ng01-288G17.g
ACCGA086086GA086087
length1681,160
definitionB6Ng01-288G17.b B6Ng01-288G17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(162,953,986 - 162,954,118)(37,666,166 - 37,667,308)
sequence
gaattcattaaaaatgactaaatatccccccccctttttttttcaagaca
gggtttctctgtatggctctggtgcctggacctttcattagagaccaggc
tggcctcgaattcagaaatccacctgcctctgcctcctgagtgctgggat
ttaggtgagcgccaccac
gaattctctgtgctgcctgatttttctggagaggcaggaacagatgtctc
ctcatctcagatagggcatccagggcaggtccaagaaacaactccacccc
agtctaacttggtgagggaaggaacgtattgtgattacctggcaatggct
tgtgatggaaggacagatgactcaagggaactgcctcactacacagccca
cccagcatggatgagggctgagaacacctcactgctggaccctgcacaac
ctgcagggagcgccactgaagaaaatctcccccacccccaccccagaaac
tgtttactgcttgtctgacctcggggagaggacaggccatgtgcatcttc
taacactgggtttgaggaggcttgtaagttttgtgggccttttagcttta
agagactctttcctcccttagaagggaatgttgagattttgaggaaacaa
ctacacaggcatcctaccttcccatccactttccccattaaattaaattt
gtccgtaaagcaagctatcagaaactcagtgttatttctgtcaagaagtc
ttaacttgcccttcaatgtagttttttgctctgtaatgaacatcctccat
accctggctttgtctcctgtctgttttcctcgatgcccacaggaacctga
aactctgagtagagagcccagtctgtttcttttatctttgagaactccct
caccaccagcagccctgtgaggatgggcatatcttgagtgtatgagatag
gtctagacgagtgccactggacctgggtaacagtagaaaatgtggcttcc
gaaaagcaaatgagctaataatccactgtctaagtcagggtttctattcc
tccacaaaacatcatgaccaagttgggggaggaaaggggttttattcagc
ttacagttccaccattgcctgttcatcaccaaaagggaaagtcagggact
ggggactcacacagggcagggattctagaggccagggagctgatggcaga
ggccacgaacggctgttggttactgggttgctttccttgcttatccagct
tgctttcttatagatcccaggactaccagcctaggaatggcacccaccca
catgtgggctggacccctgatccctggagcgaatcactattgagagaaaa
tgtctatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162953986_162954118
seq2: B6Ng01-288G17.b_81_210 (reverse)

seq1  GTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGG  50
      |||||||||| | || | ||||||||||||| ||||||||||||||| ||
seq2  GTGGTGGCGCTCACC-TAAATCCCAGCACTCAGGAGGCAGAGGCAGGTGG  49

seq1  ATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  100
      |||||||| ||| |||||||||||||||  |  |  || |||||| || |
seq2  ATTTCTGAATTCGAGGCCAGCCTGGTCTCTAATGAAAGGTCCAGG-CA-C  97

seq1  CAGGGCTATACAGAGAAACCCTGTCTCGAAAAA  133
      ||| || ||||||||||||||||||| ||||||
seq2  CAGAGCCATACAGAGAAACCCTGTCTTGAAAAA  130

seq1: chr13_37666166_37667308
seq2: B6Ng01-288G17.g_71_1230

seq1  GAATTCTCTGTGCTGCCTGATTTTTCTGGAGAGGCAGGAACAGATGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGCTGCCTGATTTTTCTGGAGAGGCAGGAACAGATGTCTC  50

seq1  CTCATCTCAGATAGGGCATCCAGGGCAGGTCCAAGAAACAACTCCACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCAGATAGGGCATCCAGGGCAGGTCCAAGAAACAACTCCACCCC  100

seq1  AGTCTAACTTGGTGAGGGAAGGAACGTATTGTGATTACCTGGCAATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACTTGGTGAGGGAAGGAACGTATTGTGATTACCTGGCAATGGCT  150

seq1  TGTGATGGAAGGACAGATGACTCAAGGGAACTGCCTCACTACACAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGAAGGACAGATGACTCAAGGGAACTGCCTCACTACACAGCCCA  200

seq1  CCCAGCATGGATGAGGGCTGAGAACACCTCACTGCTGGACCCTGCACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATGGATGAGGGCTGAGAACACCTCACTGCTGGACCCTGCACAAC  250

seq1  CTGCAGGGAGCGCCACTGAAGAAAATCTCCCCCACCCCCACCCCAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGAGCGCCACTGAAGAAAATCTCCCCCACCCCCACCCCAGAAAC  300

seq1  TGTTTACTGCTTGTCTGACCTCGGGGAGAGGACAGGCCATGTGCATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTGCTTGTCTGACCTCGGGGAGAGGACAGGCCATGTGCATCTTC  350

seq1  TAACACTGGGTTTGAGGAGGCTTGTAAGTTTTGTGGGCCTTTTAGCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGGGTTTGAGGAGGCTTGTAAGTTTTGTGGGCCTTTTAGCTTTA  400

seq1  AGAGACTCTTTCCTCCCTTAGAAGGGAATGTTGAGATTTTGAGGAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTTTCCTCCCTTAGAAGGGAATGTTGAGATTTTGAGGAAACAA  450

seq1  CTACACAGGCATCCTACCTTCCCATCCACTTTCCCCATTAAATTAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGGCATCCTACCTTCCCATCCACTTTCCCCATTAAATTAAATTT  500

seq1  GTCCGTAAAGCAAGCTATCAGAAACTCAGTGTTATTTCTGTCAAGAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTAAAGCAAGCTATCAGAAACTCAGTGTTATTTCTGTCAAGAAGTC  550

seq1  TTAACTTGCCCTTCAATGTAGTTTTTTGCTCTGTAATGAACATCCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGCCCTTCAATGTAGTTTTTTGCTCTGTAATGAACATCCTCCAT  600

seq1  ACCCTGGCTTTGTCTCCTGTCTGTTTTCCTCGATGCCCACAGGAACCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCTTTGTCTCCTGTCTGTTTTCCTCGATGCCCACAGGAACCTGA  650

seq1  AACTCTGAGTAGAGAGCCCAGTCTGTTTCTTTTATCTTTGAGAACTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGTAGAGAGCCCAGTCTGTTTCTTTTATCTTTGAGAACTCCCT  700

seq1  CACCACCAGCAGCCCTGTGAGGATGGGCATATCTTGAGTGTATGAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCAGCAGCCCTGTGAGGATGGGCATATCTTGAGTGTATGAGATAG  750

seq1  GTCTAGACGAGTGCCACTGGACCTGGGTAACAGTAGAAAATGTGGCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGACGAGTGCCACTGGACCTGGGTAACAGTAGAAAATGTGGCTTCC  800

seq1  GAAAAGCAAATGAGCTAATAATCCACTGTCTAAGTCAGGGTTTCTATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAAATGAGCTAATAATCCACTGTCTAAGTCAGGGTTTCTATTCC  850

seq1  TCCACAAAACATCATGACCAAGTT-GGGGAGGAAAGGG--TTTATTCAGC  897
      |||||||||||||||||||||||| |||||||||||||  ||||||||||
seq2  TCCACAAAACATCATGACCAAGTTGGGGGAGGAAAGGGGTTTTATTCAGC  900

seq1  TTACAGTTCCA-CATTG-CTGTTCATCACCAAA---GGAAGTCA-GGACT  941
      ||||||||||| ||||| |||||||||||||||   | |||||| |||||
seq2  TTACAGTTCCACCATTGCCTGTTCATCACCAAAAGGGAAAGTCAGGGACT  950

seq1  -GGGACTCACACAGGGCA-GGAATCTAGAGGC--AGGAGCTGAT-GCAGA  986
       ||||||||||||||||| ||| |||||||||   ||||||||| |||||
seq2  GGGGACTCACACAGGGCAGGGATTCTAGAGGCCAGGGAGCTGATGGCAGA  1000

seq1  GGCCACGAAGGGCTGTTGTTTACTGGGTTGCTTTCCCTGCCTTATTCAGC  1036
      ||||||||| |||||||| ||||||||||||||||| || ||||| ||||
seq2  GGCCACGAACGGCTGTTGGTTACTGGGTTGCTTTCCTTG-CTTATCCAGC  1049

seq1  TTGCTTTCTTATAGAACCCAAGACTACCAGCCTAGGGATGGCA-CCACCC  1085
      ||||||||||||||| |||| ||||||||||||||| |||||| ||||||
seq2  TTGCTTTCTTATAGATCCCAGGACTACCAGCCTAGGAATGGCACCCACCC  1099

seq1  ACA-ATGGGCTGGA-CCCTGATCCCTTGAGCG-ATCACTAAT-TGAGAAA  1131
      |||  ||||||||| ||||||||||| ||||| ||||||| |  ||||||
seq2  ACATGTGGGCTGGACCCCTGATCCCTGGAGCGAATCACTATTGAGAGAAA  1149

seq1  ATGCCTTATAGC  1143
      ||| | ||||||
seq2  ATGTC-TATAGC  1160