BAC Information

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BAC

Clone NameB6Ng01-290A09
Chromosome3 (Build37)1 (Build37)
Map Location 159,176,446 - 159,176,89231,331,338 - 31,332,415
singlet/doubletsingletsinglet
Overlap geneDepdc1a
Upstream geneLrrc7, LOC100041008, LOC668905, LOC668907
Downstream geneRpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290A09.bB6Ng01-290A09.g
ACCGA087266GA087267
length1,0231,063
definitionB6Ng01-290A09.b B6Ng01-290A09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,176,446 - 159,176,892)(31,331,338 - 31,332,415)
sequence
gaattccatatatatatatataaatggccttccatggcctcctcacagtg
ccgagcctcagctgctctgcgtgaccccttcatgccttcaaaaccagtac
cctgtagttaactcttacacattgctaagtccagccacagcccaaggtac
aacctttgctatctgtggaacacagcctctttgtgctctcaaaaaacact
tcccagaagatgtcacttcaatgatgctggtcacttcttaatcaccgcta
atttcttagctccagctaaccagcatcaacagtcccagtaatgcaaagtt
ttcacgttagtagttccggtatcttgttaatcacagctaattcttcagcc
ccagctaaccagaaccacagaatcttcacaatcaaagtaacaatggccct
gaaaagagtctttaatcttctctctgaaatttcacaagccaggcctccat
cttctgcactgttctcaacattatcttccaagctcctacacaacatccca
gagttcttaacaccaaatagatcttctagcccaaaattccaaagtccttc
cacagtcctccccaaaacatggtcaggctgtcacaggaataccccactat
gctgttaccaatttgtcttagtcgggggttttttttgtttttgtttgttt
gtttttagtttttcgagacagggtttctctgtatagccctggcctggaac
tcactttatagaccaggctggcctcgaactcagaaatccgcctgcctctg
tctcctaagtgctgggattaaaggcatgtgccaccgcctggctagtcggg
gtttctattcctgcacaaacatcatgaccaaaaagcaacttgggggagga
aagggtttattcatcttacacttccacattgctgtttatcaccaagaaag
tcaggactggagctaaagcaagtcaggaagcaggagctgatgcagaggcc
cttggaggatgttttttactggcttgcctctccagcttgctcagcctgct
ctcttatggacagactaccagcc

gaattctctcctctgactctggcacccagagactggactcagcatactga
gtttgcttcttccaatatttgcaattttttttcctttttgaaactggagt
atttgaaactgtgtttgagtaggaatcattctgagtagaccagaatgcta
tttgactagttctatcattcgcaaaatggagattagtcacagctacatat
actggttaaatttaaacctttgtgggtatatactgattaagttcaaactt
cttgattttcctaatcaagttttcagaaactcttccctattgtttaatga
tgcaatgtgctgaaataacaaatgtactttcaacaaaaaataaaattttg
ttttcaaatcaggtaaacttgatctaagaccaaaatccatgcctgcccag
gctgacaaaatgaacatgactttggaagacatcattaagctgaataagat
ccagcaaagacgtcacaacaggcctgatccccgaatgaatcgaggcgctg
ggcctaagaggtacaggcccgccatcacccatagtggcaggaacaggctg
gcaccataccgcagaccaaaacttcttccagacaagtggcagcatgaccg
attcgttggctgcttcagggctggaaaccacatggatactagtgggaagc
tgctcctgtcaaacctgcactacagagtgtcagatgctgatatccggaaa
ctcttttctgaatttggaacgttgagaaaatatgctgtgcactatgatgg
ctctggacgaagtttagggacagcacatgtgcactttgaaaggaaggcag
atgccctgaaggctatgagacagtacaatggcatccctttggatggccgc
cctatgaacattcagcttgtcacctcacagactgatatacaacgaagacc
tgcacaaaacagaacagggacaccattacagaaaccctggctctggaggg
tttagtgtgggatggtggatcatctttgatctttttatttcatttctatt
tctctgtttaaaactcatgtaaactcttccttttctctttctcctctcct
ctctcattttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_159176446_159176892
seq2: B6Ng01-290A09.b_672_1069

seq1  GGGTTTTTTTT-TGTTTGTTTGGTTTGGTTTGGTTTTTCGAGACAGGATT  49
      ||||||||||| | |||||||| ||   ||| ||||||||||||||| ||
seq2  GGGTTTTTTTTGTTTTTGTTTGTTTGTTTTTAGTTTTTCGAGACAGGGTT  50

seq1  TCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGG  99
      ||||||| |||||||||    ||||||||||||| | |||||||||||||
seq2  TCTCTGTATAGCCCTGG----CCTGGAACTCACTTTATAGACCAGGCTGG  96

seq1  CCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA  149
      ||||||||||||||||| ||||||||||| |||| |||||||||||||||
seq2  CCTCGAACTCAGAAATCCGCCTGCCTCTGTCTCCTAAGTGCTGGGATTAA  146

seq1  AGGCGTGCACTACCACACCCAGCCTAATCTAGAATTTTTATTACTTGATA  199
      |||| ||   | ||||  || | |                          
seq2  AGGCATG---TGCCACCGCCTGGC--------------------------  167

seq1  ACGTAAATTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACC  249
                   ||||| |||||||||||||||||||||||||||||||
seq2  -------------TAGTCGGGGTTTCTATTCCTGCACAAACATCATGACC  204

seq1  AAAAAGCA--GTTGGGGAGGAAAGGGTTTATTTAGCTTACACCTCCATGC  297
      ||||||||   | ||||||||||||||||||| | ||||||| ||||   
seq2  AAAAAGCAACTTGGGGGAGGAAAGGGTTTATTCATCTTACACTTCCACAT  254

seq1  TGCTTTTCATCACCAAAGGAAGTCAGGAATGGAACTCAAGCAGGTCAGGA  347
      |||| || |||||| ||| ||||||||| |||| || ||||| |||||||
seq2  TGCTGTTTATCACC-AAGAAAGTCAGGACTGGAGCTAAAGCAAGTCAGGA  303

seq1  AGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCT  397
      |||||||||||||||||||||| | |  ||||||| ||||||||||||| 
seq2  AGCAGGAGCTGATGCAGAGGCCCTTGGAGGATGTTTTTTACTGGCTTGCC  353

seq1  TCCCCGGGCTTGCTCAGCCTGCTCTCTTATAGAATCCAAGACTACCAGCC  447
      || ||  ||||||||||||||||||||||| ||     ||||||||||||
seq2  TCTCC-AGCTTGCTCAGCCTGCTCTCTTATGGA----CAGACTACCAGCC  398


seq1: chr1_31331338_31332415
seq2: B6Ng01-290A09.g_66_1128

seq1  GAATTCTCTCCTCTGACTCTGGCACCCAGAGACTGGACTCAGCATACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTCTGACTCTGGCACCCAGAGACTGGACTCAGCATACTGA  50

seq1  GTTTGCTTCTTCCAATATTTGCAATTTTTTTTCCTTTTTGAAACTGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTCTTCCAATATTTGCAATTTTTTTTCCTTTTTGAAACTGGAGT  100

seq1  ATTTGAAACTGTGTTTGAGTAGGAATCATTCTGAGTAGACCAGAATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACTGTGTTTGAGTAGGAATCATTCTGAGTAGACCAGAATGCTA  150

seq1  TTTGACTAGTTCTATCATTCGCAAAATGGAGATTAGTCACAGCTACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAGTTCTATCATTCGCAAAATGGAGATTAGTCACAGCTACATAT  200

seq1  ACTGGTTAAATTTAAACCTTTGTGGGTATATACTGATTAAGTTCAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTAAATTTAAACCTTTGTGGGTATATACTGATTAAGTTCAAACTT  250

seq1  CTTGATTTTCCTAATCAAGTTTTCAGAAACTCTTCCCTATTGTTTAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTTCCTAATCAAGTTTTCAGAAACTCTTCCCTATTGTTTAATGA  300

seq1  TGCAATGTGCTGAAATAACAAATGTACTTTCAACAAAAAATAAAATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTGCTGAAATAACAAATGTACTTTCAACAAAAAATAAAATTTTG  350

seq1  TTTTCAAATCAGGTAAACTTGATCTAAGACCAAAATCCATGCCTGCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATCAGGTAAACTTGATCTAAGACCAAAATCCATGCCTGCCCAG  400

seq1  GCTGACAAAATGAACATGACTTTGGAAGACATCATTAAGCTGAATAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAAAATGAACATGACTTTGGAAGACATCATTAAGCTGAATAAGAT  450

seq1  CCAGCAAAGACGTCACAACAGGCCTGATCCCCGAATGAATCGAGGCGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGACGTCACAACAGGCCTGATCCCCGAATGAATCGAGGCGCTG  500

seq1  GGCCTAAGAGGTACAGGCCCGCCATCACCCATAGTGGCAGGAACAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAGAGGTACAGGCCCGCCATCACCCATAGTGGCAGGAACAGGCTG  550

seq1  GCACCATACCGCAGACCAAAACTTCTTCCAGACAAGTGGCAGCATGACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATACCGCAGACCAAAACTTCTTCCAGACAAGTGGCAGCATGACCG  600

seq1  ATTCGTTGGCTGCTTCAGGGCTGGAAACCACATGGATACTAGTGGGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTGGCTGCTTCAGGGCTGGAAACCACATGGATACTAGTGGGAAGC  650

seq1  TGCTCCTGTCAAACCTGCACTACAGAGTGTCAGATGCTGATATCCGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGTCAAACCTGCACTACAGAGTGTCAGATGCTGATATCCGGAAA  700

seq1  CTCTTTTCTGAATTTGGAACGTTGAGAAAATATGCTGTGCACTATGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTGAATTTGGAACGTTGAGAAAATATGCTGTGCACTATGATGG  750

seq1  CTCTGGACGAAGTTTAGGGACAGCACATGTGCACTTTGAAAGGAAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACGAAGTTTAGGGACAGCACATGTGCACTTTGAAAGGAAGGCAG  800

seq1  ATGCCCTGAAGGCTATGAGACAGTACAATGGCATCCCTTTGGATGGCCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTGAAGGCTATGAGACAGTACAATGGCATCCCTTTGGATGGCCGC  850

seq1  CCTATGAACATTCAGCTTGTCACCTCACAGACTGATATACAACGAAGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAACATTCAGCTTGTCACCTCACAGACTGATATACAACGAAGACC  900

seq1  TGCACAAAACAGAAACAGGGACACCATTACAAGAAACCCTGGCTCTGGAG  950
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  TGCACAAAACAG-AACAGGGACACCATTAC-AGAAACCCTGGCTCTGGAG  948

seq1  GGTTTAGTGGTGGATGGTGGATTCATCTTTTGATTCTTTTTATTTCATTT  1000
      |||||||||  |||||||||| ||||| ||||| ||||||||||||||||
seq2  GGTTTAGTGTGGGATGGTGGA-TCATC-TTTGA-TCTTTTTATTTCATTT  995

seq1  CTTATTTTCTCCTGTTTTAAAACTCATGTAAAACTCTTTCTTTTTCTCTT  1050
      ||   ||||| ||| |||||||||||||| |||||| ||| ||||||| |
seq2  CT--ATTTCT-CTG-TTTAAAACTCATGT-AAACTC-TTCCTTTTCTC-T  1038

seq1  TTCTCTCTCTCTCTCTCTCTTTTTTTTC  1078
      ||||| ||||| |||||||  |||||||
seq2  TTCTC-CTCTC-CTCTCTC-ATTTTTTC  1063


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