BAC Information

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BAC

Clone NameB6Ng01-290I01
Chromosome1 (Build37)
Map Location 172,361,068 - 172,460,155
singlet/doubletdoublet
Overlap geneNos1ap
Upstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik
Downstream geneLOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290I01.bB6Ng01-290I01.g
ACCGA087630GA087631
length946775
definitionB6Ng01-290I01.b B6Ng01-290I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(172,459,215 - 172,460,155)(172,361,068 - 172,361,839)
sequence
gaattccaacttaagagtcctaaaccaaaccaaccctctctcccccttca
gaacacggtccaagagtggagttgtgtgagaagatttctgagtgcttgtg
agaaaattccaaaggaaacaaggtgtgagtctggtgacctcaggtttttc
agaacacagaattgttcctggaatgcgatttcgtgctcctcccaggcgca
gcagataggagtgagtttacttcagctgtagttagccatgtgcctcgatg
gagagacatgtttttgcctcctgcggcttgtccttgtgattgaagacttt
ttgcaggggatttcttagcctgcagagtattaattgtctgatgctctgaa
taaagttgggtattggatgagatgttagcgggcctcagttcacaccatca
gctctagcagtgaacatttccttaagtttctctttttgttcagggtgttt
tatcaaagccacaaagtgaaagaaggacaaacatcccctccttagctctt
cctccatttggtttgcattgttccctcagtctcctgctttcaagccttgt
tgcccttccatgcctcggtgatggcagtgggcttgtttgctaggacaagt
agcctttgagaagtgtgaagccttgatgacagtgtggtttacagacgaga
agggctgctctacacagaagagagcctgtgggcaccgcagtgaagagatg
gagttacaggaatgagaaaaaagattgaatctacagagacactgtctagc
ttgcataggagcaattttgtagatagggtctcacaatgaagcccaggttg
gtctatctggaactcactgtgtagcctaggctagcccaagacttgcagca
gtctttctactttctctcagtctttactttctcttcctcctcctcttccc
ttcttgctttcttctcttctctctcttctctctcttcttctcttct
gaattctccttttctgctttttcctgcctcctccttcccaaagaccaagt
aaaagaaaatcggtgaggtgtgctcagagctcatagctacacccggaaga
ttcaagcacttttctcaaaatttaagtcatttctctactgagtcccatca
gttgttactctctttgaatcagagctgagatggtgtatgtgtgtgtgtat
gtatgtgtgagttcatgtacgtacccctgtatgtgttactgacagtagct
cctaagacctcatacatattgggctatgcaaactaggccaagcaagcgct
ctaccactgagctctctatccgagctattctttttatttcttttaagatg
ccagcttcctgactgtaattttccgcaactcatggcatctagaatctaag
ctccattttactttgctcacacttggggcctgggagtgcgagagaaggct
tggctgggcattcacacttggggttgtcacacagccacagtatgctgctg
gctggggctgtggcctttgaaggctacactcggctgggtgtccaggatgt
ctcactcaggagctagctgatgatgctggctgtcaactgaaaacccagct
ggagctgccgccagcatgcctgcgcatggcctcccccagcatatctggat
ctggccaatgttttcttagcagctcgtatcccctcagagtgagcagtagc
agcctggcctgagcttgcctcataaccacctattcagttgtgtttttgtt
ggctgtaaacaagtcactaagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172459215_172460155
seq2: B6Ng01-290I01.b_42_987 (reverse)

seq1  AGAAGAAGAAGAAGA---AGAAGA---AGAAGAAGAAGAAAGCAAGAA-G  43
      ||||| |||||||||   ||||||   ||||| ||||||||||||||| |
seq2  AGAAG-AGAAGAAGAGAGAGAAGAGAGAGAAG-AGAAGAAAGCAAGAAGG  48

seq1  GAAGAGGAGGAGGAAGAGAAAGTAAAGACTGAGAGAAAGTAGAAAGACTG  93
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAGGAGGAAGAGAAAGTAAAGACTGAGAGAAAGTAGAAAGACTG  98

seq1  CTGCAAGTCTTGGGCTAGCCTAGGCTACACAGTGAGTTCCAGATAGACCA  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTCTTGGGCTAGCCTAGGCTACACAGTGAGTTCCAGATAGACCA  148

seq1  ACCTGGGCTTCATTGTGAGACCCTATCTACAAAATTGCTCCTATGCAAGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCTTCATTGTGAGACCCTATCTACAAAATTGCTCCTATGCAAGC  198

seq1  TAGACAGTGTCTCTGTAGATTCAATCTTTTTTCTCATTCCTGTAACTCCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTGTCTCTGTAGATTCAATCTTTTTTCTCATTCCTGTAACTCCA  248

seq1  TCTCTTCACTGCGGTGCCCACAGGCTCTCTTCTGTGTAGAGCAGCCCTTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCACTGCGGTGCCCACAGGCTCTCTTCTGTGTAGAGCAGCCCTTC  298

seq1  TCGTCTGTAAACCACACTGTCATCAAGGCTTCACACTTCTCAAAGGCTAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGTAAACCACACTGTCATCAAGGCTTCACACTTCTCAAAGGCTAC  348

seq1  TTGTCCTAGCAAACAAGCCCACTGCCATCACCGAGGCATGGAAGGGCAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTAGCAAACAAGCCCACTGCCATCACCGAGGCATGGAAGGGCAAC  398

seq1  AAGGCTTGAAAGCAGGAGACTGAGGGAACAATGCAAACCAAATGGAGGAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGAAAGCAGGAGACTGAGGGAACAATGCAAACCAAATGGAGGAA  448

seq1  GAGCTAAGGAGGGGATGTTTGTCCTTCTTTCACTTTGTGGCTTTGATAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAGGAGGGGATGTTTGTCCTTCTTTCACTTTGTGGCTTTGATAAA  498

seq1  ACACCCTGAACAAAAAGAGAAACTTAAGGAAATGTTCACTGCTAGAGCTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGAACAAAAAGAGAAACTTAAGGAAATGTTCACTGCTAGAGCTG  548

seq1  ATGGTGTGAACTGAGGCCCGCTAACATCTCATCCAATACCCAACTTTATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGAACTGAGGCCCGCTAACATCTCATCCAATACCCAACTTTATT  598

seq1  CAGAGCATCAGACAATTAATACTCTGCAGGCTAAGAAATCCCCTGCAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATCAGACAATTAATACTCTGCAGGCTAAGAAATCCCCTGCAAAA  648

seq1  AGTCTTCAATCACAAGGACAAGCCGCAGGAGGCAAAAACATGTCTCTCCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAATCACAAGGACAAGCCGCAGGAGGCAAAAACATGTCTCTCCA  698

seq1  TCGAGGCACATGGCTAACTACAGCTGAAGTAAACTCACTCCTATCTGCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCACATGGCTAACTACAGCTGAAGTAAACTCACTCCTATCTGCTG  748

seq1  CGCCTGGGAGGAGCACGAAATCGCATTCCAGGAACAATTCTGTGTTCTGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGGGAGGAGCACGAAATCGCATTCCAGGAACAATTCTGTGTTCTGA  798

seq1  AAAACCTGAGGTCACCAGACTCACACCTTGTTTCCTTTGGAATTTTCTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGAGGTCACCAGACTCACACCTTGTTTCCTTTGGAATTTTCTCA  848

seq1  CAAGCACTCAGAAATCTTCTCACACAACTCCACTCTTGGACCGTGTTCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTCAGAAATCTTCTCACACAACTCCACTCTTGGACCGTGTTCTG  898

seq1  AAGGGGGAGAGAGGGTTGGTTTGGTTTAGGACTCTTAAGTTGGAATTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAGAGAGGGTTGGTTTGGTTTAGGACTCTTAAGTTGGAATTC  946

seq1: chr1_172361068_172361839
seq2: B6Ng01-290I01.g_64_838

seq1  GAATTCTCCTTTTCTGCTTTTTCCTGCCTCCTCCTTCCCAAAGACCAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTCTGCTTTTTCCTGCCTCCTCCTTCCCAAAGACCAAGT  50

seq1  AAAAGAAAATCGGTGAGGTGTGCTCAGAGCTCATAGCTACACCCGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATCGGTGAGGTGTGCTCAGAGCTCATAGCTACACCCGGAAGA  100

seq1  TTCAAGCACTTTTCTCAAAATTTAAGTCATTTCTCTACTGAGTCCCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCACTTTTCTCAAAATTTAAGTCATTTCTCTACTGAGTCCCATCA  150

seq1  GTTGTTACTCTCTTTGAATCAGAGCTGAGATGGTGTATGTGTGTGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTACTCTCTTTGAATCAGAGCTGAGATGGTGTATGTGTGTGTGTAT  200

seq1  GTATGTGTGAGTTCATGTACGTACCCCTGTATGTGTTACTGACAGTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGAGTTCATGTACGTACCCCTGTATGTGTTACTGACAGTAGCT  250

seq1  CCTAAGACCTCATACATATTGGGCTATGCAAACTAGGCCAAGCAAGCGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACCTCATACATATTGGGCTATGCAAACTAGGCCAAGCAAGCGCT  300

seq1  CTACCACTGAGCTCTCTATCCGAGCTATTCTTTTTATTTCTTTTAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGAGCTCTCTATCCGAGCTATTCTTTTTATTTCTTTTAAGATG  350

seq1  CCAGCTTCCTGACTGTAATTTTCCGCAACTCATGGCATCTAGAATCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCTGACTGTAATTTTCCGCAACTCATGGCATCTAGAATCTAAG  400

seq1  CTCCATTTTACTTTGCTCACACTTGGGGCCTGGGAGTGCGAGAGAAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTACTTTGCTCACACTTGGGGCCTGGGAGTGCGAGAGAAGGCT  450

seq1  TGGCTGGGCATTCACACTTGGGGTTGTCACACAGCCACAGTATGCTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGCATTCACACTTGGGGTTGTCACACAGCCACAGTATGCTGCTG  500

seq1  GCTGGGGCTGTGGCCTTTGAAGGCTACACTCGGCTGGGTGTCCAGGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCTGTGGCCTTTGAAGGCTACACTCGGCTGGGTGTCCAGGATGT  550

seq1  CTCACTCAGGAGCTAGCTGATGATGCTGGCTGTCAACTGAAAACCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGGAGCTAGCTGATGATGCTGGCTGTCAACTGAAAACCCAGCT  600

seq1  GGAGCTGCCGCCAGCATGCCTGCGCATGGCCT-CCCCAGCATATCTGGAT  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAGCTGCCGCCAGCATGCCTGCGCATGGCCTCCCCCAGCATATCTGGAT  650

seq1  CTGGCCAATG-TTTCTTAGCAGCTCGTAT-CCCTCAGAGTGAGCAGTAGC  697
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  CTGGCCAATGTTTTCTTAGCAGCTCGTATCCCCTCAGAGTGAGCAGTAGC  700

seq1  AGCCTGGCCTGAGCTTGCCTCAGAAACCACCTATTCAGTTGTG-TTTTGT  746
      ||||||||||||||||||||||  ||||||||||||||||||| ||||||
seq2  AGCCTGGCCTGAGCTTGCCTCA-TAACCACCTATTCAGTTGTGTTTTTGT  749

seq1  TGGCTGTAAACAAGTCACTAAGCTCA  772
      ||||||||||||||||||||||||||
seq2  TGGCTGTAAACAAGTCACTAAGCTCA  775