BAC Information

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BAC

Clone NameB6Ng01-290J09
Chromosome1 (Build37)
Map Location 52,693,509 - 52,694,594
singlet/doubletsinglet
Overlap gene5330401P04Rik
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305
Downstream gene2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290J09.bB6Ng01-290J09.g
ACCGA087692GA087693
length1,084895
definitionB6Ng01-290J09.b B6Ng01-290J09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctaccgtcctcggtttatagcctgagtcgctgcgtcctctcc
ttactgtggggctggagttgatagaagcctcgtcttgttgtgcctctgcc
tggtagttggtgcttgctctgctcacactttactaagcaatttagttgag
ccctttttagtgtcatctgtttcctactgagtccgttatactgacctgaa
gtttttttgtgctctgctctcatggtgaagtatagaatccttatgtagaa
gtagttgtggtttacctccagctgcagctgtccaagatgtccctaagctg
agccaccgtgactttgctcatcttaatactgtgcacatttgtcatctgtc
agtcccgatgctgtcttatgcttgcgactaattattgagtcttctgctcg
agtttcttttccagtatgcttcccttagctcttgccatcacttgaggacc
aacgacatcagtgcatgtgtgctgctcagcaggcgacctaacagtactga
ctctggatgggctggtcgccgacagacgcctgctagatagggaagagcaa
agggccgtaatcaccatggagaagaatttttggtcataaaatactaaaaa
ctatgaaaatctccctttgagcacatttttaaaagggattttggaaaatt
aaatacttaggtaatgcatttatttcatttttttttgttttatctttcag
ttcccagatgtaaatctctgaaggaaacggacttaattaaaacttctgtg
tcagactgctattgctacaatcaacattcgcaaatccagtggacatatat
gtggtcaactgtgcaggttagggcctgctttttttttttttttttaatca
tgacttaaaaatgtggaataaaaatgtaccactttgtgtgagaactaaaa
aggggccctggggaagagggggaggaaagacccatgttcccaccagagtt
tccacctatgctctggaaaagcggatgtgggagggctgctagagtctttc
cactcagccctgagtgggcatcaaactctgacccactcttttgtggggac
aaagggccagtccactggggaccctggggctact
gaattcctgatctctccaacacttttaacatgaaggggtgttgtattttg
tcaaatgctttctcagcatctaaggagatgatcttgtgatttttttttct
ttgagtttgtttatatattggattacattaatggattttggtatattgaa
ccaaccgtatacttctgggataaaacctacttgaaaatggtgagtgatgg
ttttgatgtgttcttggactcagtttgtgagattttttattgggtatttt
tgcatcaatattcatgatcaaaattgtcctgaaattctcttttttgttgt
tggtggattattgtgtggtttaggtatcagagtaattgtggctccataga
atgaattagatagtttcttctatttctattttatggaatagtttgaggaa
tattggtattaggtcatctttgaagatctggtagaattctgccctgggca
ttttttggttgggtttttttttaataacttcttttattttctttggggat
atggacttgtttagaaagtttatctactcttgatttaactttggtttgag
gtatctgtctacaaaatcatttcatttcatctagattttccagttttgtt
gagaataggcttttgtagtaggatctgattttttttttttaatttcctca
gtttctgttgttatgtctcccttcatttccaattatgttgatttggatat
ttttcttctgggccatttaattagtttggctaggggtttatcctatcttg
ttgattctctcaaagaatcagctttttgggtttgtttgatcttctatata
gttctctttgtttcctatttggtttgacttcagccccttgagtttgacta
ttttcctgctgtcttctcctccttgaaagaggtttttctctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52693509_52694594
seq2: B6Ng01-290J09.b_46_1129

seq1  GAATTCTTCTACCGTCCTCGGTTTATAGCCTGAGTCGCTGCGTCCTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTACCGTCCTCGGTTTATAGCCTGAGTCGCTGCGTCCTCTCC  50

seq1  TTACTGTGGGGCTGGAGTTGATAGAAGCCTCGTCTTGTTGTGCCTCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGGGGCTGGAGTTGATAGAAGCCTCGTCTTGTTGTGCCTCTGCC  100

seq1  TGGTAGTTGGTGCTTGCTCTGCTCACACTTTACTAAGCAATTTAGTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGGTGCTTGCTCTGCTCACACTTTACTAAGCAATTTAGTTGAG  150

seq1  CCCTTTTTAGTGTCATCTGTTTCCTACTGAGTCCGTTATACTGACCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTAGTGTCATCTGTTTCCTACTGAGTCCGTTATACTGACCTGAA  200

seq1  GTTTTTTTGTGCTCTGCTCTCATGGTGAAGTATAGAATCCTTATGTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTGTGCTCTGCTCTCATGGTGAAGTATAGAATCCTTATGTAGAA  250

seq1  GTAGTTGTGGTTTACCTCCAGCTGCAGCTGTCCAAGATGTCCCTAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGTGGTTTACCTCCAGCTGCAGCTGTCCAAGATGTCCCTAAGCTG  300

seq1  AGCCACCGTGACTTTGCTCATCTTAATACTGTGCACATTTGTCATCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCGTGACTTTGCTCATCTTAATACTGTGCACATTTGTCATCTGTC  350

seq1  AGTCCCGATGCTGTCTTATGCTTGCGACTAATTATTGAGTCTTCTGCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCGATGCTGTCTTATGCTTGCGACTAATTATTGAGTCTTCTGCTCG  400

seq1  AGTTTCTTTTCCAGTATGCTTCCCTTAGCTCTTGCCATCACTTGAGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTTTCCAGTATGCTTCCCTTAGCTCTTGCCATCACTTGAGGACC  450

seq1  AACGACATCAGTGCATGTGTGCTGCTCAGCAGGCGACCTAACAGTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACATCAGTGCATGTGTGCTGCTCAGCAGGCGACCTAACAGTACTGA  500

seq1  CTCTGGATGGGCTGGTCGCCGACAGACGCCTGCTAGATAGGGAAGAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATGGGCTGGTCGCCGACAGACGCCTGCTAGATAGGGAAGAGCAA  550

seq1  AGGGCCGTAATCACCATGGAGAAGAATTTTTGGTCATAAAATACTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCGTAATCACCATGGAGAAGAATTTTTGGTCATAAAATACTAAAAA  600

seq1  CTATGAAAATCTCCCTTTGAGCACATTTTTAAAAGGGATTTTGGAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAATCTCCCTTTGAGCACATTTTTAAAAGGGATTTTGGAAAATT  650

seq1  AAATACTTAGGTAATGCATTTATTTCATTTTTTTTTGTTTTATCTTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTAGGTAATGCATTTATTTCATTTTTTTTTGTTTTATCTTTCAG  700

seq1  TTCCCAGATGTAAATCTCTGAAGGAAACGGACTTAATTAAAACTTCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGATGTAAATCTCTGAAGGAAACGGACTTAATTAAAACTTCTGTG  750

seq1  TCAGACTGCTATTGCTACAATCAACATTCGCAAATCCAGTGGACATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTGCTATTGCTACAATCAACATTCGCAAATCCAGTGGACATATAT  800

seq1  GTGGTCAACTGTGCAGGTTAGGGCCTGCTTTTTTTTTTTTTTTTTAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAACTGTGCAGGTTAGGGCCTGCTTTTTTTTTTTTTTTTTAATCA  850

seq1  TGACTTAAAAATGTGGAATAAAAATGTACCACTTTGTGTGAGAACTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAAAAATGTGGAATAAAAATGTACCACTTTGTGTGAGAACTAAAA  900

seq1  AGGGGCCCTGGGGAAGAGGGGGAGGAAAGACCCATG-TCCCACCAGAG-T  948
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  AGGGGCCCTGGGGAAGAGGGGGAGGAAAGACCCATGTTCCCACCAGAGTT  950

seq1  TCCACCTATGCTCTGGAAAGGCGGATGTGGGAGGGCTGCTAGAGTCTTTC  998
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCACCTATGCTCTGGAAAAGCGGATGTGGGAGGGCTGCTAGAGTCTTTC  1000

seq1  CACTCAGCCCTGAGTGGGCATCCAAACCTCTGACCCACTCTTTGTGGGGG  1048
      ||||||||||||||||||||||  || |||||||||||||||| || |||
seq2  CACTCAGCCCTGAGTGGGCATC--AAACTCTGACCCACTCTTT-TGTGGG  1047

seq1  GAC-AAGGGGCAGCCCAACCTGGGGGCCCTGGGGCTACT  1086
      ||| ||||| ||| |||  |||||| |||||||||||||
seq2  GACAAAGGGCCAGTCCA--CTGGGGACCCTGGGGCTACT  1084