BAC Information

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BAC

Clone NameB6Ng01-290N05
Chromosome1 (Build37)7 (Build37)
Map Location 5,499,878 - 5,500,412128,137,586 - 128,138,714
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
Downstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290N05.bB6Ng01-290N05.g
ACCGA087870GA087871
length1,0991,127
definitionB6Ng01-290N05.b B6Ng01-290N05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,499,878 - 5,500,412)(128,137,586 - 128,138,714)
sequence
gaattcttctgctttcacctccctagtgctaagatcacgggtgtgtaccg
tgcccatttcctgctgttctgtggtcaagctcggagctttattaacgcta
ggcaagcacatgaccgactgagctacaccctagtccctgaacatccttac
acaaccaactaagctacacctctacaccctgaacatcctgtgtgtgtatt
tgctaagttggagatcctacatactgggcctcagtattcacatctggaaa
acagagcccatgatagagctcaccatgtggggtgttgtgaggatcaaatg
tctctggctttctcaatagtgtctagtgcagaagtgctcagtagagcctg
ccatgtttctcttctcctgacgagttatttacttgatgtctgtctctacc
tcagaactgtgggagtaatgtctagctccccacctcacagtgtctacaac
tgtgccaacctgccaagactgtagagctactgattgagaatatgcataca
gcagcaatacaccgaccactataggaaaccttactgtcagagagaaaggg
gctgctccttactgctaagtacattgctttactggctggctttatgtgtc
aacttgacacaggctggagttatcagagaagaaggagcttcagttgggga
aatgccttcatgagatccagctgtaaggcattttctcaattagtgatcaa
gggggaaaggccccttgtgggtgggaccatctctaggctggtaggcttgg
ttctataagagagcaggctgagcaagccaggggaggctgatggcctctgc
atcagctcctgcttcctgacctgcttgagttccagtcctgacttccttgg
tgatgaacagcagtatggaaatgtaagctgaataaaccctttcctcccca
acttgcttcttggtcatgatgtttgtgcaggaatagaaacccttgactaa
ggcaaattggtaccagcagagtggggtattcctgtgacacctgaccatgt
tttggggagactgtcgaaggactttggaactttgggctagaagatccatt
cagtgttagaagccttctgttcggattgttgtgtaggagctttggaaga
gaattcagatgtaaggtctctgatttccaaagcttgcacttcgcactctg
tcccagattccttgcgttactgactgtcctgcatgtgcctgtgttagaga
ttcagacgaggcagcttcacctcagtaagtggatgcaagggacttgctaa
gacaccgcacacgcgagcatcctgggtctcgctggggctggtttccttcc
ctcgaagagaagcttcggatcttgtcagtcactgagctgctattttcagc
ctctagaaaatgagctctcgtttgttccttgaaagtagaagaggaagcca
aagagtgggccaggaaggaaaggatgtttacagtcaacttacagtgttca
aaaattcctcttctattgtatgtacatacatttggttagaggaaacttct
ctgggctaaacaatgcacttttcatgttgcaaacaaagagtgttttcaga
actttgtgaatgcgcatgagtgcacatgtcacagactttttagcctagaa
caatggatgtcttcagaactggcaacaaaaattcaggaaagggaaaaaga
agtaagtccttagtgttaatatgttagaatgattaacatatataacactt
aaccagaagaaatgggatgcaacctagccactgtgtactagacttctgat
tttaggggaaggggcatttcaaatcgcctcacagtgctggtggtgagatg
atcagtaaagacctgccttgggttagtgctggctttaacctccaattgta
aactgtatatttgtttaagtcttggatgagcctctcatttcctgggtagt
tgatgtgtcttatggaaatagtaaccatttctttaatattcaaacaacac
tagtgcctgcagttttgttttgttttttatattcttttttctttcttccc
tttttgacagtgctgaggtaggacccagagctttatatgtgctttcccac
caccgaccttacatcccccaccccttccatttttggtgtatatgattacc
agctgggttgtagtggcctcacctgttattccagcaatttgggaggctga
agcaggagattactgagagtcaggcctaacttggaacttacatggtaatt
ctagacgatgggctacatagtgagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_5499878_5500412
seq2: B6Ng01-290N05.b_627_1146 (reverse)

seq1  TCTTCC-AAGCTCCTACACAAC-ATCTG-ACAGA--GCTCTTAACAACGA  45
      |||||| ||||||||||||||| ||| | |||||  |||  |||||  ||
seq2  TCTTCCAAAGCTCCTACACAACAATCCGAACAGAAGGCTTCTAACACTGA  50

seq1  ATGGATCTTCAAGCCCAAAGTTCCAAAGTCCTTCCACAGTCCTCCCCAAA  95
      |||||||||| ||||||||||||||||||||||| ||||| |||||||||
seq2  ATGGATCTTCTAGCCCAAAGTTCCAAAGTCCTTCGACAGT-CTCCCCAAA  99

seq1  ACATGATCAGGTTGTCACAGGAATACCCCACTCTGCTGGTACCAATTTGT  145
      ||||| ||||| ||||||||||||||||||||||||||||||||||||| 
seq2  ACATGGTCAGG-TGTCACAGGAATACCCCACTCTGCTGGTACCAATTTGC  148

seq1  CTTAGTC-AGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAG  194
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCAAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAG  198

seq1  TTGGGGAGGAAAGGGCTTATTCAGCTTACACTTCCATACTGCTGTTCATC  244
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TTGGGGAGGAAAGGGTTTATTCAGCTTACATTTCCATACTGCTGTTCATC  248

seq1  ACTAAAGAAGTCAGGACTGGAACTCAAGCATGTCAGGAAGCAGGAGCTGA  294
      || || |||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGA  298

seq1  TGCAGAGGCCATGGAGGGATGTTCATTACTGGCTTGCCTCCCCTGGCTTG  344
      |||||||||||           |||          |||||||||||||||
seq2  TGCAGAGGCCA-----------TCA----------GCCTCCCCTGGCTTG  327

seq1  CTCATCCTGCTCTCTTATAGAACCCAAGACTGCCAGTCCAGAGATGGTCC  394
      |||| ||||||||||||||||| ||||| || |||| | |||||||||||
seq2  CTCAGCCTGCTCTCTTATAGAA-CCAAGCCTACCAGCCTAGAGATGGTCC  376

seq1  CACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTA  426

seq1  CAGCTGGATCTCATGGAGGCATTTCCTCAAATGAAGCTCCTTTCTCTGAG  494
      ||||||||||||||| |||||||||| ||| |||||||||||  |||  |
seq2  CAGCTGGATCTCATGAAGGCATTTCCCCAACTGAAGCTCCTTCTTCTCTG  476

seq1  ATAACTCCAG-CTGTGTCAAGTTGACAC--AAAACTAGCCAGTA  535
      |||||||||| |||||||||||||||||  ||| | ||||||||
seq2  ATAACTCCAGCCTGTGTCAAGTTGACACATAAAGCCAGCCAGTA  520

seq1: chr7_128137586_128138714
seq2: B6Ng01-290N05.g_69_1195

seq1  GAATTCAGATGTAAGGTCTCTGATTTCCAAAGCTTGCACTTCGCACTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTAAGGTCTCTGATTTCCAAAGCTTGCACTTCGCACTCTG  50

seq1  TCCCAGATTCCTTGCGTTACTGACTGTCCTGCATGTGCCTGTGTTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGATTCCTTGCGTTACTGACTGTCCTGCATGTGCCTGTGTTAGAGA  100

seq1  TTCAGACGAGGCAGCTTCACCTCAGTAAGTGGATGCAAGGGACTTGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACGAGGCAGCTTCACCTCAGTAAGTGGATGCAAGGGACTTGCTAA  150

seq1  GACACCGCACACGCGAGCATCCTGGGTCTCGCTGGGGCTGGTTTCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCGCACACGCGAGCATCCTGGGTCTCGCTGGGGCTGGTTTCCTTCC  200

seq1  CTCGAAGAGAAGCTTCGGATCTTGTCAGTCACTGAGCTGCTATTTTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGAGAAGCTTCGGATCTTGTCAGTCACTGAGCTGCTATTTTCAGC  250

seq1  CTCTAGAAAATGAGCTCTCGTTTGTTCCTTGAAAGTAGAAGAGGAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAAAATGAGCTCTCGTTTGTTCCTTGAAAGTAGAAGAGGAAGCCA  300

seq1  AAGAGTGGGCCAGGAAGGAAAGGATGTTTACAGTCAACTTACAGTGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGGCCAGGAAGGAAAGGATGTTTACAGTCAACTTACAGTGTTCA  350

seq1  AAAATTCCTCTTCTATTGTATGTACATACATTTGGTTAGAGGAAACTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTCTTCTATTGTATGTACATACATTTGGTTAGAGGAAACTTCT  400

seq1  CTGGGCTAAACAATGCACTTTTCATGTTGCAAACAAAGAGTGTTTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAAACAATGCACTTTTCATGTTGCAAACAAAGAGTGTTTTCAGA  450

seq1  ACTTTGTGAATGCGCATGAGTGCACATGTCACAGACTTTTTAGCCTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGAATGCGCATGAGTGCACATGTCACAGACTTTTTAGCCTAGAA  500

seq1  CAATGGATGTCTTCAGAACTGGCAACAAAAATTCAGGAAAGGGAAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGATGTCTTCAGAACTGGCAACAAAAATTCAGGAAAGGGAAAAAGA  550

seq1  AGTAAGTCCTTAGTGTTAATATGTTAGAATGATTAACATATATAACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCCTTAGTGTTAATATGTTAGAATGATTAACATATATAACACTT  600

seq1  AACCAGAAGAAATGGGATGCAACCTAGCCACTGTGTACTAGACTTCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAGAAATGGGATGCAACCTAGCCACTGTGTACTAGACTTCTGAT  650

seq1  TTTAGGGGAAGGGGCATTTCAAATCGCCTCACAGTGCTGGTGGTGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGAAGGGGCATTTCAAATCGCCTCACAGTGCTGGTGGTGAGATG  700

seq1  ATCAGTAAAGACCTGCCTTGGGTTAGTGCTGGCTTTAACCTCCAATTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAAGACCTGCCTTGGGTTAGTGCTGGCTTTAACCTCCAATTGTA  750

seq1  AACTGTATATTTGTTTAAGTCTTGGATGAGCCTCTCATTTCCTGGGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATATTTGTTTAAGTCTTGGATGAGCCTCTCATTTCCTGGGTAGT  800

seq1  TGATGTGTCTTATGGAAATAGTAACCATTTCTTTAATATTCAAACAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTCTTATGGAAATAGTAACCATTTCTTTAATATTCAAACAACAC  850

seq1  TAGTGCCTGCAGTTTTGTTTTGTTTTTTATATTCTTTTTTCTTTTCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGTGCCTGCAGTTTTGTTTTGTTTTTTATATTCTTTTTTC-TTTCTTCC  899

seq1  CTTTTTGACAGTGCTGAGGTAGAACCCAGAGCTTTATATGTGC-TTCCAA  949
      |||||||||||||||||||||| |||||||||||||||||||| |||| |
seq2  CTTTTTGACAGTGCTGAGGTAGGACCCAGAGCTTTATATGTGCTTTCCCA  949

seq1  CCACCGACC-TACATCCCCCAACCCTTCCATTTTTGGTGTATATGAATTA  998
      ||||||||| ||||||||||| ||||||||||||||||||||||| ||||
seq2  CCACCGACCTTACATCCCCCACCCCTTCCATTTTTGGTGTATATG-ATTA  998

seq1  ACAGCTGGG-TGTAGTGG-CTCACCTGTAATCCCAGC-ATTTGGGAGGCT  1045
       |||||||| |||||||| ||||||||| || ||||| ||||||||||||
seq2  CCAGCTGGGTTGTAGTGGCCTCACCTGTTATTCCAGCAATTTGGGAGGCT  1048

seq1  GAGGCAGGAGGATTACTGAGAGTTCAAGGCTAAACCTGGA--CTACATGG  1093
      || |||||| |||||||||||||   ||||  ||| ||||   |||||||
seq2  GAAGCAGGA-GATTACTGAGAGT--CAGGCCTAACTTGGAACTTACATGG  1095

seq1  TAAATTCTAGGACAGATGGGGCCACATAGTGAGACC  1129
      | ||||||| ||| ||| |||| |||||||||||||
seq2  T-AATTCTA-GAC-GAT-GGGCTACATAGTGAGACC  1127