BAC Information

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BAC

Clone NameB6Ng01-291E19
Chromosome1 (Build37)
Map Location 55,142,626 - 55,143,793
singlet/doubletsinglet
Overlap geneHspd1
Upstream geneHecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b
Downstream geneHspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291E19.bB6Ng01-291E19.g
ACCGA088223GA088224
length5171,171
definitionB6Ng01-291E19.b B6Ng01-291E19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ccaacccacaggcatgagtgaccactggactacagatatccactaatgca
gggcagggagatgggggaataaagggcatgggagaaaacctgcgtcccat
cagagttccggtgctctgggaggttggatgcattagactgctgcatgctt
tccacacggccccgggtgggtgtctggctgtgtgaagccacggaatccca
gcttgcgggggaggggggtggacaaggggcagtcttaggtaccagattct
cggcctcgagcatcccagacacctgctggacaccatggaagagctgagaa
cagaatagggtccccaggggcagctcagtcagctccggggccgaagggtg
gagagggcaggggggagagggaggcgctgggtggttcccacacaggcgag
aggtccttggtccagtccatggctagagcgtaggaaggccttctgggtgg
gaggttagacatggctccttaggagaaagcctatcccatcgttcaagcac
agcgggccatgatgtgt
gaattcctacacttgagatgtaagttgttcaaggacagccttgccacaag
ggagttagaactcagactaagctagtgagactctctcaaaagcaaaaact
ggacaatttttttgcaatgtgaaaattgtagcaatcacgaggtgtacaat
gaagggacgaatggaagaccacaaaggttttctcccaagggcaagtgaaa
acagtctggtgatatgtgttgcagaagctggtggatggatcgctctgagt
ctcaggacagtctaggctaccggagaaatgctgtcttaaaaacaaaaccc
ccaaacaacaaagcccataaagtaaagtttgtaaagatggctcagcgggt
aagagcactgactgctcttccgaaggtcccagcaaccttcaaatcccagc
aaccacatggtggctcacaaccacccgtaatgagatctgacaccctcttc
tggtgtgcctgaaaacagctacagtgtacttacatataataaataaatct
tgaaaaaaaaaggtttagttacttaaaaaaacaaaacaaaaaacacagaa
accaatgattctatgctagtgcattttgccttatgtgttggagtatttca
gcacaatgagtgaactctcacattacagctatatactttgaggtattatt
agacttaagttgtactttcccctctataccctctaactactgggacgaga
tccaaaatttaatgcaagcatgcacaaaatcatgactatagtttgaaaat
cctccttgagatattactactctattacatcacaatgtacaaaagtcccc
caaatcgcctggagcagtagtaaggacaccatggtggtagaatgaccaat
agacctcctgactaaataacacctctagaccactaagttgtaccacatgc
aaattagatttttcacaaaacttgataacaaaattgctgtcttgcagcta
ctatattctttaacaccatttaagtatactggtacctttggccccatgta
acagctacagcatctgctaaaaggtcttacactgaagcattagctcggag
cgtccgcaacaaatttacaattcttggcataaggcccggagttgagatga
aggagtcagtgcctgggaacctgtccatctggcaaggactgtggtagtcg
aagccattttcttgtggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_55142626_55143793
seq2: B6Ng01-291E19.g_64_1234

seq1  GAATTCCTACACTTGAGATGTAAGTTGTTCAAGGACAGCCTTGCCACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACACTTGAGATGTAAGTTGTTCAAGGACAGCCTTGCCACAAG  50

seq1  GGAGTTAGAACTCAGACTAAGCTAGTGAGACTCTCTCAAAAGCAAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAGAACTCAGACTAAGCTAGTGAGACTCTCTCAAAAGCAAAAACT  100

seq1  GGACAATTTTTTTGCAATGTGAAAATTGTAGCAATCACGAGGTGTACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTTTTTTGCAATGTGAAAATTGTAGCAATCACGAGGTGTACAAT  150

seq1  GAAGGGACGAATGGAAGACCACAAAGGTTTTCTCCCAAGGGCAAGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGACGAATGGAAGACCACAAAGGTTTTCTCCCAAGGGCAAGTGAAA  200

seq1  ACAGTCTGGTGATATGTGTTGCAGAAGCTGGTGGATGGATCGCTCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGGTGATATGTGTTGCAGAAGCTGGTGGATGGATCGCTCTGAGT  250

seq1  CTCAGGACAGTCTAGGCTACCGGAGAAATGCTGTCTTAAAAACAAAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACAGTCTAGGCTACCGGAGAAATGCTGTCTTAAAAACAAAACCC  300

seq1  CCAAACAACAAAGCCCATAAAGTAAAGTTTGTAAAGATGGCTCAGCGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAACAAAGCCCATAAAGTAAAGTTTGTAAAGATGGCTCAGCGGGT  350

seq1  AAGAGCACTGACTGCTCTTCCGAAGGTCCCAGCAACCTTCAAATCCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGACTGCTCTTCCGAAGGTCCCAGCAACCTTCAAATCCCAGC  400

seq1  AACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGACACCCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGACACCCTCTTC  450

seq1  TGGTGTGCCTGAAAACAGCTACAGTGTACTTACATATAATAAATAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGCCTGAAAACAGCTACAGTGTACTTACATATAATAAATAAATCT  500

seq1  TGAAAAAAAAAGGTTTAGTTACTTAAAAAAACAAAACAAAAAACACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAAGGTTTAGTTACTTAAAAAAACAAAACAAAAAACACAGAA  550

seq1  ACCAATGATTCTATGCTAGTGCATTTTGCCTTATGTGTTGGAGTATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGATTCTATGCTAGTGCATTTTGCCTTATGTGTTGGAGTATTTCA  600

seq1  GCACAATGAGTGAACTCTCACATTACAGCTATATACTTTGAGGTATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAATGAGTGAACTCTCACATTACAGCTATATACTTTGAGGTATTATT  650

seq1  AGACTTAAGTTGTACTTTCCCCTCTATACCCTCTAACTACTGGGACGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAGTTGTACTTTCCCCTCTATACCCTCTAACTACTGGGACGAGA  700

seq1  TCCAAAATTTAATGCAAGCATGCACAAAATCATGACTATAGTTTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATTTAATGCAAGCATGCACAAAATCATGACTATAGTTTGAAAAT  750

seq1  CCTCCTTGAGATATTACTACTCTATTACATCACAATGTACAAAAGTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGAGATATTACTACTCTATTACATCACAATGTACAAAAGTCCCC  800

seq1  CAAATCGCCTGGAGCAGTAGTAAGGACACCATGGTGGTAGAATGACCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCGCCTGGAGCAGTAGTAAGGACACCATGGTGGTAGAATGACCAAT  850

seq1  AGACCTCCTGACTAAATAACACCTCTAGACCACTAAGTTGTACCACATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCTGACTAAATAACACCTCTAGACCACTAAGTTGTACCACATGC  900

seq1  AAATTAGATTTTTCACAAAACTTGATAAC-AAATTGCTGTCTTGCAGCTA  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAATTAGATTTTTCACAAAACTTGATAACAAAATTGCTGTCTTGCAGCTA  950

seq1  CTATATTCTTTAACACCATTTAAGTATACTGGTACCTTTGGCCCCATTGT  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTATATTCTTTAACACCATTTAAGTATACTGGTACCTTTGGCCCCA-TGT  999

seq1  AACAGCTACAGCATCTGCTAAAAGGTC-TACACCTTGAAGCATTAAGGCT  1048
      ||||||||||||||||||||||||||| |||||  ||||||||||  |||
seq2  AACAGCTACAGCATCTGCTAAAAGGTCTTACAC--TGAAGCATTA--GCT  1045

seq1  C-GAGCGTCCGCACCAAATTTTACATCTTTGGCAT-AGGCCC-GAG-TGA  1094
      | ||||||||||| |||||||   ||  ||||||| |||||| ||| |||
seq2  CGGAGCGTCCGCAACAAATTTACAATTCTTGGCATAAGGCCCGGAGTTGA  1095

seq1  GATG-AGGAGCCAGTGCCCGGGACACTGGTCTCATCTGGCGAAGGACTGT  1143
      |||| ||||| ||||||| |||| ||  ||| |||||||| |||||||||
seq2  GATGAAGGAGTCAGTGCCTGGGA-ACCTGTC-CATCTGGC-AAGGACTGT  1142

seq1  GGGTAGTCGAAG-CAT----TTCTGGGGAA  1168
       ||||||||||| |||    || |||||||
seq2  -GGTAGTCGAAGCCATTTTCTTGTGGGGAA  1171