BAC Information

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BAC

Clone NameB6Ng01-291I21
Chromosome1 (Build37)
Map Location 19,685,027 - 19,685,459
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291I21.bB6Ng01-291I21.g
ACCGA088409GA088410
length9341,188
definitionB6Ng01-291I21.b B6Ng01-291I21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaacaccaacttcactcttcactaatctcatatttttccaagt
agaactttcaattttcttttcttttctttcctttcctttccttttctttt
cttttcttttctctccttttttcttttttcttttttctatctttttttct
tttttctttttttcttttttttgctagtgtaaaatatagacgaattttaa
tttatctacacggctgctctgggaaggatcatattcaaggatatgatcca
cctgagcatgtcacacacttttaatttctctggccaaaatacattccttt
aatcactctggctggaatacaggcatacccttgactcatctttaattcca
aacagtaacttctaactgaagaacagacaaattgatgaatcagagaaaga
catgacagaatgagccagaaataggatatgaccagctctcagcagatcag
gcagaaaagagaggctacttaaagagcaatgaggaaaagagaattgagtt
caactcatttcagttgagttgtttagttcagtttggaatgcagttatgta
cagatcagttctgagcagttcagttgatagaattcagaggcaggcttgct
tgctttcttgctttctctctctctctctctctctctctctctctctctct
ctttctttcttttctttctttctttctttctctctctctttcttttctgt
ccttctttctctttctttctttctttctttctttctttcctttctttccc
tcccttccttccttccttccttccattccttccttccttccttcctttct
ttcttctttctttctttctttctttctttctttcttcttctttcttcttt
ctttctttcccttctttctcttccttccttccttccttcctttctttctt
cttctttctttctttcttcttcctttctttcttt

gaattcttaggaagagaaatgattatgtactttttattattaaagacata
ttgagtaaaggtttcttaatctattctaaaggaaaaaatgagacttctta
aattagcaggaatagatccaacaaaaatcatggtaccttttactaatgca
aaattccctcattgtgggaagaaaataaacattgacaaaaggcttgcaac
aatttggggtgagaaacaaacagtatccacaaagcaagcaatttcaggtt
ataaaaagatcttattggactctccctcatattctgaaaagaacaacttt
ctggaccatctgtgttctatactaatgcaaaataaatcaggaaaagggtt
ataagtcagaaaatataagtaaactcaatcaaatttcatatgattcagtt
caaagatcaaactcatatgaaattcttatattatacaattttcctgaatc
tcttaatatagttactgaatttcattatgcagaaagagctgttttgagtg
tagaacctgctgaactcattcagatattattcaccgctatcttccttgtt
tattcaagtacaagtggtcagaactaaacgtcattcattgtatataagat
atctcagttcccatatgtgtctatcaggccctctagctccagagggtaaa
ttatttcaaactctctaatgctataaagtcttaaatactccaagaaaact
atggggtgagaaacaaacagtatccacaaagcaagcaatttcaggttata
atgatgaaattgatcaactaaggatataaaatgtactagaatcttcagaa
ttttataagaaaacatgttaaaagcaaaggcataaaaaggcatttttcta
ttacttggaaaaagccaaggaaattgtactcatttatactttctataacc
aaacactatcttcagagagtaaaaaaaaaaaaaaaaaaagaaataaaagg
tgcctcaagaaaatgaatttgggtaaatggattttgtttcattatacaga
tcatggaaaataaaataaatataccataccatcaactcatattcagatat
caatagaataactgctttaattcctgatgctgatttgtattgcaaattat
agaatcatgactgttattggaatatggataaactggacatgctctgcaag
ttctccaataaaatgaaggaatttttttggcatttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19685027_19685459
seq2: B6Ng01-291I21.b_682_978 (reverse)

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAAAGAAAGAAAGGAAG  50
      |||||||||||| ||| |||||||||||| |||  |||||||||||||||
seq2  AAAGAAAGAAAGGAAG-AAGAAAGAAAGAAAGAAGAAGAAAGAAAGGAAG  49

seq1  GAAGAAAGAAAAGAGAGAGAGAG-AGAGAAAGAAAGAAAGAAAGAAAGA-  98
      |||| ||| || || ||||| || || ||||||||||||| |||||||| 
seq2  GAAGGAAGGAAGGA-AGAGAAAGAAGGGAAAGAAAGAAAG-AAGAAAGAA  97

seq1  -AAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGAAAGGAAGAG  147
       |||||||||||||||||||||||||| ||| |||| |||||||||||  
seq2  GAAGAAAGAAAGAAAGAAAGAAAGAAA-GAAAGAAGAAAGAAAGGAAGGA  146

seq1  AGAGAGAAAGAAAGAAAAAGAAAGATGGAAATAGGTGTTAAACCATAAAT  197
      ||  || ||| ||   || ||| || ||||  | | |             
seq2  AGGAAGGAAGGAATGGAAGGAAGGAAGGAAGGAAGGG-------------  183

seq1  TTCAGCAAATTGATCAAACATCAAGCATTTTCTATCAATTAAGTGAGAAG  247
         ||  ||          |  ||| |             |||  |||| 
seq2  ---AGGGAA----------AGAAAGGA-------------AAGAAAGAA-  206

seq1  CATCCATTGTGAGATAAATCTCAATAGAGTCAGAAAATGAAACAAGGCCA  297
                 |||        || | ||  |||||  |||| |||| ||
seq2  -----------AGA--------AAGAAAGAAAGAAAGAGAAAGAAGGACA  237

seq1  CACATTATAGGCAAAACAACTATAATCAAAATGTATCTCCAAGAAACGAA  347
                  |||| ||  | |   | || |       |||||| |||
seq2  -----------GAAAAGAAAGAGAGAGAGAAAG------AAAGAAA-GAA  269

seq1  TATTTTTCAAGAGAATCATGTAGTCTGTAAATATGGTTGGAGTACATTGT  397
                 ||||                                   
seq2  -----------AGAA-----------------------------------  273

seq1  AATAAACTTGTTTAAGAAA-AAAGAGAGAGAGAGAGA  433
                   |||||| |||||||||||||||||
seq2  -------------AAGAAAGAAAGAGAGAGAGAGAGA  297


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