BAC Information

Click to search

BAC

Clone NameB6Ng01-291J11
Chromosome1 (Build37)
Map Location 194,303,482 - 194,440,597
singlet/doubletdoublet
Overlap geneKcnh1, Hhat
Upstream geneDtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneA730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291J11.bB6Ng01-291J11.g
ACCGA088437GA088438
length3761,126
definitionB6Ng01-291J11.b B6Ng01-291J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,440,222 - 194,440,597)(194,303,482 - 194,304,594)
sequence
attaattagactggctgtccagcaagccctaggaatccacctgtgtctac
cttcccattgctggggttataagcaagcatggtcgagcctaactatatat
tttagacatgggtactgggaatctgggattgaagacaggttctcaagatt
tcacagtgagcacttaaccagctgtattatggaatatactatggagaggg
gtacctggagggcccatgccaaggtatcctcctgagtaattacaccatgc
aacagatctgggttaaagagggtttactggaggaagggaggggaagggga
agggcctgagaaggggttgaggtatattactggatatgtagataggcaga
cggatgggagcagagctataagggca
gaattcttttgacaagctgctggcacagttcagtggccactcaggttcta
agtctgctgagctctgttctgctactgtcttgggttacctctttcctttt
ctgtttttggtcaaaagaatgcaaagaatccccagctctctctttaccta
ccctctgctcctcacacatctttgtttttacctggtctctctgtaaattc
ttttttttccccatcaatttatttatattcactttacagctcccctcttt
tctcagttccccctcacaagcccctccccccccacccctttccctattcc
accctgggtaccaacccaccctggcacctctggtcactgcagaactaggc
acattctttcccactgaggccagacaaggcaactcagttgggggaacagg
atccacaggcaggcaacagagtcagagtaagctccctgctccagtttgtt
gagggacccgcatgaagaccaaggtgcacatctgctacacatggaggagg
gggtaggtcaagcccatgtatgctctttgtaaattctaaatggcagaact
aattcaagttaggtaggctgaggctcaaggcacaagagaattgggctttc
tcccatagggaggggcaggaggcccacttagcacctagtgagtcatttgg
tacagtctgttggttcttccagaaatggccacatgaccggggtatgtccc
atcttctggtttgtgtgtgtgttcccaaggcactgatgtgactctttttg
caagaacggaaaactctttctgttccacgttgaagaacaatgaagggaag
aagggaagcacatgcagacacatgcattcatcgtcccgggagcaggagcg
gagggagcacgtgagtgctgaccttccttgtctcactaggcctgcccact
atcttgtgaagaccaaagattgttttaccagaactgcagggaagcccctg
ctctccagggagtgagaaaaaggaaaactttgcctttgctccccattttt
tagttagccaagaaaagtaactccatcttggcaggaattgaatttgggtg
cataagagtcaggtaagaatagtatttccatttatggaaagatgggccct
cctaacctccatttcatagggagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_194440222_194440597
seq2: B6Ng01-291J11.b_54_429 (reverse)

seq1  TGCCCTTATAGCTCTGCTCCCATCCATCTGCCTGTCTACATATCCACTCA  50
      ||||||||||||||||||||||||| ||||||| |||||||||||| | |
seq2  TGCCCTTATAGCTCTGCTCCCATCCGTCTGCCTATCTACATATCCAGTAA  50

seq1  TCTGCCTCTACCCCTTCTCAGGCCCTTCCCCTTCCCCTCCCTTCCTCCAG  100
      | | |||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTCAACCCCTTCTCAGGCCCTTCCCCTTCCCCTCCCTTCCTCCAG  100

seq1  TAAACCCTCTTTAACCCAGATCTGTTGCATGGTGTAATTACTCAGGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTCTTTAACCCAGATCTGTTGCATGGTGTAATTACTCAGGAGGA  150

seq1  TACCTTGGCATGGGCCCTCCAGGTACCCCTCTCCATAGTATATTCCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGGCATGGGCCCTCCAGGTACCCCTCTCCATAGTATATTCCATAA  200

seq1  TACAGCTGGTTAAGTGCTCACTGTGAAATCTTGAGAACCTGTCTTCAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGGTTAAGTGCTCACTGTGAAATCTTGAGAACCTGTCTTCAATC  250

seq1  CCAGATTCCCAGTACCCATGTCTAAAATATATAGTTAGGCTCGACCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCCCAGTACCCATGTCTAAAATATATAGTTAGGCTCGACCATGC  300

seq1  TTGCTTATAACCCCAGCAATGGGAAGGTAGACACAGGTGGATTCCTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATAACCCCAGCAATGGGAAGGTAGACACAGGTGGATTCCTAGGG  350

seq1  CTTGCTGGACAGCCAGTCTAATTAAT  376
      ||||||||||||||||||||||||||
seq2  CTTGCTGGACAGCCAGTCTAATTAAT  376

seq1: chr1_194303482_194304594
seq2: B6Ng01-291J11.g_69_1194

seq1  GAATTCTTTTGACAAGCTGCTGGCACAGTTCAGTGGCCACTCAGGTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGACAAGCTGCTGGCACAGTTCAGTGGCCACTCAGGTTCTA  50

seq1  AGTCTGCTGAGCTCTGTTCTGCTACTGTCTTGGGTTACCTCTTTCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTGAGCTCTGTTCTGCTACTGTCTTGGGTTACCTCTTTCCTTTT  100

seq1  CTGTTTTTGGTCAAAAGAATGCAAAGAATCCCCAGCTCTCTCTTTACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGGTCAAAAGAATGCAAAGAATCCCCAGCTCTCTCTTTACCTA  150

seq1  CCCTCTGCTCCTCACACATCTTTGTTTTTACCTGGTCTCTCTGTAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCTCCTCACACATCTTTGTTTTTACCTGGTCTCTCTGTAAATTC  200

seq1  TTTTTTTTCCCCATCAATTTATTTATATTCACTTTACAGCTCCCCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCCCATCAATTTATTTATATTCACTTTACAGCTCCCCTCTTT  250

seq1  TCTCAGTTCCCCCTCACAAGCCCCTCCCCCCCCACCCCTTTCCCTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTCCCCCTCACAAGCCCCTCCCCCCCCACCCCTTTCCCTATTCC  300

seq1  ACCCTGGGTACCAACCCACCCTGGCACCTCTGGTCACTGCAGAACTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGTACCAACCCACCCTGGCACCTCTGGTCACTGCAGAACTAGGC  350

seq1  ACATTCTTTCCCACTGAGGCCAGACAAGGCAACTCAGTTGGGGGAACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTTCCCACTGAGGCCAGACAAGGCAACTCAGTTGGGGGAACAGG  400

seq1  ATCCACAGGCAGGCAACAGAGTCAGAGTAAGCTCCCTGCTCCAGTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGGCAGGCAACAGAGTCAGAGTAAGCTCCCTGCTCCAGTTTGTT  450

seq1  GAGGGACCCGCATGAAGACCAAGGTGCACATCTGCTACACATGGAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCCGCATGAAGACCAAGGTGCACATCTGCTACACATGGAGGAGG  500

seq1  GGGTAGGTCAAGCCCATGTATGCTCTTTGTAAATTCTAAATGGCAGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGTCAAGCCCATGTATGCTCTTTGTAAATTCTAAATGGCAGAACT  550

seq1  AATTCAAGTTAGGTAGGCTGAGGCTCAAGGCACAAGAGAATTGGGCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGTTAGGTAGGCTGAGGCTCAAGGCACAAGAGAATTGGGCTTTC  600

seq1  TCCCATAGGGAGGGGCAGGAGGCCCACTTAGCACCTAGTGAGTCATTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAGGGAGGGGCAGGAGGCCCACTTAGCACCTAGTGAGTCATTTGG  650

seq1  TACAGTCTGTTGGTTCTTCCAGAAATGGCCACATGACCGGGGTATGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTGTTGGTTCTTCCAGAAATGGCCACATGACCGGGGTATGTCCC  700

seq1  ATCTTCTGGTTTGTGTGTGTGTTCCCAAGGCACTGATGTGACTCTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGGTTTGTGTGTGTGTTCCCAAGGCACTGATGTGACTCTTTTTG  750

seq1  CAAGAACGGAAAACTCTTTCTGTTCCACGTTGAAGAACAATGAAGGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACGGAAAACTCTTTCTGTTCCACGTTGAAGAACAATGAAGGGAAG  800

seq1  AAGGGAAGCACATGCAGACACATGCATTCATCGTCCCGGGAGCAGGAGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGCACATGCAGACACATGCATTCATCGTCCCGGGAGCAGGAGCG  850

seq1  GAGGGAGCACGTGAGTGCTGACCTTCCTTGTCTCACTAGGCCTGCCCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCACGTGAGTGCTGACCTTCCTTGTCTCACTAGGCCTGCCCACT  900

seq1  ATCTTGTG-AGACCAAAGATTG-TTTACCAGAACTGCAGGGAAG-CCCTG  947
      |||||||| ||||||||||||| ||||||||||||||||||||| |||||
seq2  ATCTTGTGAAGACCAAAGATTGTTTTACCAGAACTGCAGGGAAGCCCCTG  950

seq1  CTCTCCA-GGAGTGAGAAAA--GGAAACTTTGCC-TTGCTCCACA-TTTT  992
      ||||||| ||||||||||||  | |||||||||| ||||||| || ||||
seq2  CTCTCCAGGGAGTGAGAAAAAGGAAAACTTTGCCTTTGCTCCCCATTTTT  1000

seq1  TAGTTAGCCAAGAAAAGTAACTCCATCTTGGCAGGATTTGAATTTGGTTG  1042
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  TAGTTAGCCAAGAAAAGTAACTCCATCTTGGCAGGAATTGAATTTGGGTG  1050

seq1  CATAAGAGTCAGGTACAGATAGTATT--CATGTTATG--AAGATGGGGCC  1088
      |||||||||||||||   ||||||||  ||| |||||  |||||||| ||
seq2  CATAAGAGTCAGGTAAGAATAGTATTTCCAT-TTATGGAAAGATGGGCCC  1099

seq1  CTCTCATCT-CATTTCAT-GGGAGCTG  1113
        || | || |||||||| ||||||||
seq2  TCCTAACCTCCATTTCATAGGGAGCTG  1126