BAC Information

Click to search

BAC

Clone NameB6Ng01-292B16
Chromosome1 (Build37)
Map Location 143,711,639 - 143,830,124
singlet/doubletdoublet
Overlap genenone
Upstream geneEG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292B16.bB6Ng01-292B16.g
ACCGA088826GA088827
length779929
definitionB6Ng01-292B16.b B6Ng01-292B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,829,349 - 143,830,124)(143,711,639 - 143,712,569)
sequence
gaattcacttgatatgctctcactgaaaagtggatattaccccagaaact
tacaaaacccaagatacaatttgcaaaacacaagaaaatcataaagtggg
aagaccaatgtgtggatacatcattcctccttagaaaagggaacaaaata
cccatgaaaggagttacagagacaaagtttggagctgaatcatttcttat
atgtgaattttctattattgcatctatgagttacatgtttcaaaatcact
cagtttcctacttattaattggactcattagctccggaactaagagaaat
ctacatattaaggagaaaacactgaagcatcgtaagcatgtctgtaaact
tgtgtgttgagaaaaatctatgttttcgttggcagtttggtaacattttt
tttttttgacaatggactttggtgtccttgatccaatgaatgatcaaata
aagtcaaaaatactaaaaaggtgaacatgttttgaaatctggagctgaga
tgttcattttcttcatttctttctttttttattttttttaaatttttatt
ggatattttctttatttacatttcaagtgttatctcctttcctggtttca
catcggcaagccctctaccccatcccccccgcctctctacttctatgaat
gtgttttcccatccacaccactcccacctctactcccttggcactcccct
acactggaacatcgagcattcagagaagagttggcctatattcccagttg
atgccagatcaggccatcctctgctacat
gaattccattttatttccttgcaaaaaagtaagtataataagggaagttt
ctgtccctttttgtgtgtctttccaatttctgtaatttaaacacacagag
tgaacaggacattaagataatgaagggttattttggatttgcgatatgat
tcacattataaatccttatgattttgtaactgtagaatatgtaacctaga
tatgaattttatttctcataatacagtgcaggctttctgacttcatattt
gaacactaatggaattcattttgtctatactcttggatatgggacgctta
attttcttttatcaatgaaaaattgtttaaattgattcattatgagtgct
ttaaatattataaacattcaatatatacagaatttacatagtgtttgaaa
gaaatttgagaggctatgagtgataaatacacatggacaagtttaagtcc
tctcaatcgcaagacttattgggttaactaagataatatcccttgccttt
atccaagaattacattaaaacatttccatgtcaagattgacagagatttg
ctccttagaccacacaatactggtatatatgctatatattaggcagtgct
taatatttatactttgctattacatctataaaatgagaaagcatgacttc
tgtgaataagatgcactcatacttagtaatcacttataacctctaggtat
ctttacacatacacacacacactcacacacacacgcacacacacacacga
actcacacatatctctggtgtacactaccacttcactagactaaaatatc
ttccttcacctatgtagcaattctcacattgagtcagagtctactttata
gagtattatacactagaacaacaatacacacaagcttaccatgatgcatc
ctctactatgtgacgttaagtgacactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143829349_143830124
seq2: B6Ng01-292B16.b_42_820 (reverse)

seq1  ATGTAGCAGAGGATGGCCTTATCTGGCATCAA-TGGGAATATAGGCCCTT  49
      ||||||||||||||||||| |||||||||||| ||||||||||||||   
seq2  ATGTAGCAGAGGATGGCCTGATCTGGCATCAACTGGGAATATAGGCCAAC  50

seq1  GGTTCTGTGAATGCTTGATGTTCCAGTGTAGGGGAGTGCC-AGGGTGTAG  98
        |||| |||||||| |||||||||||||||||||||||| |||| ||||
seq2  TCTTCTCTGAATGCTCGATGTTCCAGTGTAGGGGAGTGCCAAGGGAGTAG  100

seq1  AGGTGGGAGTGG-GTGGATGGGAAAACACCTTCATAGAAGTAGGGAGGGG  147
      |||||||||||| |||||||||||||||| ||||||||||||| |||| |
seq2  AGGTGGGAGTGGTGTGGATGGGAAAACACATTCATAGAAGTAGAGAGGCG  150

seq1  GGGGGGATGGGGTAGAGGGCTTGCAGATGGGAAACCAGGAAAGGAGATAA  197
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  GGGGGGATGGGGTAGAGGGCTTGCCGATGTGAAACCAGGAAAGGAGATAA  200

seq1  CACTTGAAATCTAAATAAAGAAAATATCCAATAAAAATTTAAAAAAAATA  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAAATGTAAATAAAGAAAATATCCAATAAAAATTTAAAAAAAATA  250

seq1  AAAAAAGAAAGAAATGAAGAAAATGAACATCTCAGCTCAAGATTTGAAAA  297
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AAAAAAGAAAGAAATGAAGAAAATGAACATCTCAGCTCCAGATTTCAAAA  300

seq1  CATGTTCACCTTTTTACTATTTTTGACTTTATTTGATCATTCACTGGATC  347
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  CATGTTCACCTTTTTAGTATTTTTGACTTTATTTGATCATTCATTGGATC  350

seq1  AAGGACACCAAAGTCCATTGTCAAAAAAAAAAAATGTTACCAAACTGCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACACCAAAGTCCATTGTCAAAAAAAAAAAATGTTACCAAACTGCCA  400

seq1  ACGAAAACATAGATTTTTCTCAACACACAAGTTTACAGACATGCTTACGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAACATAGATTTTTCTCAACACACAAGTTTACAGACATGCTTACGA  450

seq1  TGCTTCAGTGTTTTCTACCTAATATCTAGATTTCTCTTAGTTCCGGAGCT  497
      |||||||||||||||| | |||||| ||||||||||||||||||||||||
seq2  TGCTTCAGTGTTTTCTCCTTAATATGTAGATTTCTCTTAGTTCCGGAGCT  500

seq1  AATGAGTCCAATTAATAAGTAGGAAACTGAGTGATTTTGAAACATGTAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCCAATTAATAAGTAGGAAACTGAGTGATTTTGAAACATGTAAC  550

seq1  TCATAGATGCAATAATAGAAAATTCACATATAAGAAATGATTCAGCTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATGCAATAATAGAAAATTCACATATAAGAAATGATTCAGCTCCA  600

seq1  AACTTTGTCTCTGTAACTCCTTTCATGGGTATTTTGTTCCCTTTTCTAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTCTCTGTAACTCCTTTCATGGGTATTTTGTTCCCTTTTCTAAG  650

seq1  GAGGAATGATGTATCCACACATTGGTCTTCCCACTTCTTGATTTTCTTGT  697
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  GAGGAATGATGTATCCACACATTGGTCTTCCCACTTTATGATTTTCTTGT  700

seq1  GTTTTGCAAATTGTATCTTGGGTTTTCTAAGTTTCTGGGCTAATATCCAC  747
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GTTTTGCAAATTGTATCTTGGGTTTTGTAAGTTTCTGGGGTAATATCCAC  750

seq1  TTTTCAGTGAGTGCATATCAAGTGAATTC  776
      ||||||||||| |||||||||||||||||
seq2  TTTTCAGTGAGAGCATATCAAGTGAATTC  779

seq1: chr1_143711639_143712569
seq2: B6Ng01-292B16.g_62_990

seq1  GAATTCCATTTTATTTCCTTGAAAAAGAGTAAGTATAATAAGGGAAGTTT  50
      ||||||||||||||||||||| |||| |||||||||||||||||||||||
seq2  GAATTCCATTTTATTTCCTTGCAAAAAAGTAAGTATAATAAGGGAAGTTT  50

seq1  CAGTACCATTTTGTGTGTCTTTCCAATTTCTGTAATTTAAACACACAGAG  100
      | || || ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTTTTTGTGTGTCTTTCCAATTTCTGTAATTTAAACACACAGAG  100

seq1  TGAACAGGACATTAAGATAATGAAGGGTTATTTTGGATTTGCGATATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGACATTAAGATAATGAAGGGTTATTTTGGATTTGCGATATGAT  150

seq1  TCACATTATAAATCCTTATGATTTTGTAACTGTAGAATATATAACCAAAA  200
      |||||||||||||||||||||||||||||||||||||||| ||||| | |
seq2  TCACATTATAAATCCTTATGATTTTGTAACTGTAGAATATGTAACCTAGA  200

seq1  TATGAATTTTATTTCTCATAATACAGTGCAGGCTTTCTGACATCATATTT  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATGAATTTTATTTCTCATAATACAGTGCAGGCTTTCTGACTTCATATTT  250

seq1  GAACACTAATGGAATTCATTTTGTCTATACTCTTGGATATGGGACACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAACACTAATGGAATTCATTTTGTCTATACTCTTGGATATGGGACGCTTA  300

seq1  ATTTTCTTTTATCAATAAGAAATTGTTTAAATTGATTCATTATGAGTGCT  350
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTATCAATGAAAAATTGTTTAAATTGATTCATTATGAGTGCT  350

seq1  TTAAATATTATAAACATTCAATATATACAGAATTTACATAGTGTTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTATAAACATTCAATATATACAGAATTTACATAGTGTTTGAAA  400

seq1  GAAATTTGAGAGGCTATGAGTGATAAATACACATGGACAATTTTAAGTCC  450
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAATTTGAGAGGCTATGAGTGATAAATACACATGGACAAGTTTAAGTCC  450

seq1  TCTCAATCGCAATACTTATTGGGTTAACTAAGATAATATCCCTTGCCTTT  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCGCAAGACTTATTGGGTTAACTAAGATAATATCCCTTGCCTTT  500

seq1  ATCCAAGAATTACATTAAAACATTTCAATGTCAAGATTGACAGAGATTTG  550
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCCAAGAATTACATTAAAACATTTCCATGTCAAGATTGACAGAGATTTG  550

seq1  CTCCTTAGACCACACAATACTGGAAAATATGCAATATATTAGGCAGTGCT  600
      ||||||||||||||||||||||| | |||||| |||||||||||||||||
seq2  CTCCTTAGACCACACAATACTGGTATATATGCTATATATTAGGCAGTGCT  600

seq1  TAATATTTATACTTTGCTTTTACATCTATAAAATGAGAAAGCATGACTTC  650
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAATATTTATACTTTGCTATTACATCTATAAAATGAGAAAGCATGACTTC  650

seq1  TGTGAATAAGATGCACTCATACTTAGTAATCACTTATAACCTCTAGGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAGATGCACTCATACTTAGTAATCACTTATAACCTCTAGGTAT  700

seq1  TTTTACACATACACACACACACACACACACACACACACACACACACACAA  750
       ||||||||||||||||||||| ||||||||||| ||||||||||||| |
seq2  CTTTACACATACACACACACACTCACACACACACGCACACACACACACGA  750

seq1  ACACACACATATATCTGGTGTACCCTACCATTTCACCAAGACTAAAATAT  800
      || ||||||||| |||||||||| |||||| |||| | ||||||||||||
seq2  ACTCACACATATCTCTGGTGTACACTACCACTTCA-CTAGACTAAAATAT  799

seq1  -TTCCTTCACCTAAATAGAAAAATATAAAAATGAGTCAAAGTTTACTTAA  849
       ||||||||||||  |||  || | | | | ||||||| ||| ||||| |
seq2  CTTCCTTCACCTATGTAG-CAATTCTCACATTGAGTCAGAGTCTACTTTA  848

seq1  TAGAGTATTATAAAATAGAAAAACAATACACCACAGGCTTA-CATGAATG  898
      |||||||||||| | ||||| ||||||||| |||| ||||| |||| |||
seq2  TAGAGTATTATACACTAGAACAACAATACA-CACAAGCTTACCATG-ATG  896

seq1  CATCCTCTACTATGTGATGTTAAGTGAAACTCA  931
      ||||||||||||||||| ||||||||| |||||
seq2  CATCCTCTACTATGTGACGTTAAGTGACACTCA  929