BAC Information

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BAC

Clone NameB6Ng01-292C12
Chromosome1 (Build37)
Map Location 31,795,750 - 31,842,496
singlet/doubletdoublet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneLOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292C12.bB6Ng01-292C12.g
ACCGA088865GA088866
length9861,134
definitionB6Ng01-292C12.b B6Ng01-292C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,795,750 - 31,796,501)(31,841,350 - 31,842,496)
sequence
gaattctctcgtcgcttagagactaacatgagacttcataatctaaagcc
tttatgtgttttgctttatgtgaatgcttatgatttacagaaaatatgtt
tttcaatcagtgatactaagaaactattatcaaccatttgaaaatcggca
caattccaccaacggttcctttttatttctcatataggatctgatccagg
agcatatctatatctttattaggtgtactgaggtttctttaatttggatc
attttaaataagtcataaatatatttttaaataattttggtgtacatatt
tttaatatttattaaaaacgaaagaaaatgcaaataatagggatctgata
tacttattaatttttatataaagtactagttgtatgaatgttgaatgttg
tggatttagtttaacgcttgaattatgttagttgggtccccaaaattgga
caagaatacatacacataagacgctgagtgtccttgcttccagttgtttt
tgattggtaaataaagttgctggtggacaatggctgggcatagagacaga
ggagggactttatgattcctgggctagggcctgggaaagagacaaggaag
aggtttgctgctatgctgtgaaaagagtacctgttatacctgaggaatgc
aggacagagagacagccaacatgtaagagctaaggaagagtagacccagc
cccttcccccaactcctgcacctccccttccccggccgactgggtctatg
ccaacaaagacagaatatagattttaataactaataactcaagaatatca
gaggggaggtgtcagccatgttgccggtttggagtagcccagctgtttta
ggcatattaaaatataaaggttgcatgtgtatctttcattcaggaaccca
gatcaaaggggtgagtacacaagaatgagccaccgctgccaggtctattt
gagtagtcttaattgacaactacacagtttaatatt
gaattcctccaaaatattttgtaaaattaaaatgtgaaggaatttgctat
aggataataaatgtcaaaggaaatatttttgaaaatgtgagaattgatga
actctatgaatttatgaattctagagttcagagaaatgctaaaacatgaa
aaaatacagatttgacaaacatgtcttcattctgaagtctcaggtatttg
aattaattattcaaagaatgtttcccttcacattgtccttatacagttct
tgtcaacagacctaacagccttttagaaattttgccaaccaataaaactt
tgtggttccagttaatttattatagaaatgaacaacacgagagtagggaa
ttatgagaccttctaggtccgtatagtgctgaaccattaaataactcttt
agttactgataaccatgaggactagcacatcacatgcaatgatgacatca
gtttagaggttcctacaactctgtaagttttgtcatatcatcaatgagca
atagtatttttatttgtgaggcagcatatgctgtaatagcagctgaatac
catcacagagaacatgagcatgtatctgtctatcttgaaaggtgtttaac
tgttgaaatatatccatttgaataatatgtctctcacgtgcataacaaac
ccagggacatttagccctttatttgatgaaacagttgtaatgaaatactt
gggagaaacaatcaataaaagagaatgagtagacagacagatggaaaaac
agaaagattaatcacaggtgacagaaacctgttatgaaggactggttaat
gtgactatgaagtctgatgagtcccataaccagttatctgcagtttggaa
ttgtaggaaagatggtagtttagtaaatcaaaaggctaagaatcaggaaa
ttaataatggtccaaaagccgagtagaaggacagatctaggagagagcca
atatatagtttcctttcatatttttccatttttgtgcccttgaaagctga
taatgcatctttacattaataaatcaagatgatctttctcagttaccaag
ttcaatttctaggtttaatcagaatcattgccactctggtacattggaat
acatactagtagcagctatgtggattaccatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31795750_31796501
seq2: B6Ng01-292C12.b_44_795

seq1  GAATTCTCTCGTCGCTTAGAGACTAACATGAGACTTCATAATCTAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGTCGCTTAGAGACTAACATGAGACTTCATAATCTAAAGCC  50

seq1  TTTATGTGTTTTGCTTTATGTGAATGCTTATGATTTACAGAAAATATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTTTTGCTTTATGTGAATGCTTATGATTTACAGAAAATATGTT  100

seq1  TTTCAATCAGTGATACTAAGAAACTATTATCAACCATTTGAAAATCGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCAGTGATACTAAGAAACTATTATCAACCATTTGAAAATCGGCA  150

seq1  CAATTCCACCAACGGTTCCTTTTTATTTCTCATATAGGATCTGATCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCACCAACGGTTCCTTTTTATTTCTCATATAGGATCTGATCCAGG  200

seq1  AGCATATCTATATCTTTATTAGGTGTACTGAGGTTTCTTTAATTTGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATCTATATCTTTATTAGGTGTACTGAGGTTTCTTTAATTTGGATC  250

seq1  ATTTTAAATAAGTCATAAATATATTTTTAAATAATTTTGGTGTACATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATAAGTCATAAATATATTTTTAAATAATTTTGGTGTACATATT  300

seq1  TTTAATATTTATTAAAAACGAAAGAAAATGCAAATAATAGGGATCTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTTATTAAAAACGAAAGAAAATGCAAATAATAGGGATCTGATA  350

seq1  TACTTATTAATTTTTATATAAAGTACTAGTTGTATGAATGTTGAATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTAATTTTTATATAAAGTACTAGTTGTATGAATGTTGAATGTTG  400

seq1  TGGATTTAGTTTAACGCTTGAATTATGTTAGTTGGGTCCCCAAAATTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAGTTTAACGCTTGAATTATGTTAGTTGGGTCCCCAAAATTGGA  450

seq1  CAAGAATACATACACATAAGACGCTGAGTGTCCTTGCTTCCAGTTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATACATACACATAAGACGCTGAGTGTCCTTGCTTCCAGTTGTTTT  500

seq1  TGATTGGTAAATAAAGTTGCTGGTGGACAATGGCTGGGCATAGAGACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTAAATAAAGTTGCTGGTGGACAATGGCTGGGCATAGAGACAGA  550

seq1  GGAGGGACTTTATGATTCCTGGGCTAGGGCCTGGGAAAGAGACAAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACTTTATGATTCCTGGGCTAGGGCCTGGGAAAGAGACAAGGAAG  600

seq1  AGGTTTGCTGCTATGCTGTGAAAAGAGTACCTGTTATACCTGAGGAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCTGCTATGCTGTGAAAAGAGTACCTGTTATACCTGAGGAATGC  650

seq1  AGGACAGAGAGACAGCCAACATGTAAGAGCTAAGGAAGAGTAGACCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAGAGACAGCCAACATGTAAGAGCTAAGGAAGAGTAGACCCAGC  700

seq1  CCCTTCCCCCAACTCCTGCACCTCCCCTTCCCCGGCCGACTGGGTCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCCCAACTCCTGCACCTCCCCTTCCCCGGCCGACTGGGTCTATG  750

seq1  CC  752
      ||
seq2  CC  752

seq1: chr1_31841350_31842496
seq2: B6Ng01-292C12.g_64_1197 (reverse)

seq1  TATATGGTAATCAAACATTAGCTGCTTATTTTAGTTATTGTATCTCAATG  50
      ||||||||||||  ||| ||||||||  |  ||     |||||  |||||
seq2  TATATGGTAATC-CACA-TAGCTGCTACTAGTA-----TGTATTCCAATG  43

seq1  TGCCCAGAAGTTGCAAAGGATTTCCTGGAATAAA-CTAGAAA-TGGACTT  98
      |  |||| ||| || || ||||  || || |||| ||||||| || ||||
seq2  T-ACCAG-AGTGGC-AATGATT--CT-GATTAAACCTAGAAATTGAACTT  87

seq1  GGTAAACTGAGGAAAGATCATCCTGATTTATTAATGTAAAGATGCATTAT  148
      ||| |||||| ||||||||||| |||||||||||||||||||||||||||
seq2  GGT-AACTGA-GAAAGATCATCTTGATTTATTAATGTAAAGATGCATTAT  135

seq1  CCAGCCTTTCAAGGGCAC-AAAATGG-AAAATATGAA--GGAACTATATA  194
       ||| ||||||||||||| ||||||| ||||||||||  | |||||||||
seq2  -CAG-CTTTCAAGGGCACAAAAATGGAAAAATATGAAAGGAAACTATATA  183

seq1  TTGGCTCTCTCCTAGATCTGTCCCTTCTACTCGGCTTTTGGACCATTATT  244
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGCTCTCTCCTAGATCTGT-CCTTCTACTCGGCTTTTGGACCATTATT  232

seq1  AATTTCCTGATTCTTTAGCCTTTTGATTTACTAAACTACCATCTTTCCTA  294
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTGATTC-TTAGCCTTTTGATTTACTAAACTACCATCTTTCCTA  281

seq1  CAATTCCAAACTGCAGATAACTGGTTATGGGACTCATCAGACTTCATAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAAACTGCAGATAACTGGTTATGGGACTCATCAGACTTCATAGT  331

seq1  CACATTAACCAGTCCTTCATAACAGGTTTCTGTCACCTGTGATTAATCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAACCAGTCCTTCATAACAGGTTTCTGTCACCTGTGATTAATCTT  381

seq1  TCTGTTTTTCCATCTGTCTGTCTACTCATTCTCTTTTATTGATTGTTTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTCCATCTGTCTGTCTACTCATTCTCTTTTATTGATTGTTTCT  431

seq1  CCCAAGTATTTCATTACAACTGTTTCATCAAATAAAGGGCTAAATGTCCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTATTTCATTACAACTGTTTCATCAAATAAAGGGCTAAATGTCCC  481

seq1  TGGGTTTGTTATGCACGTGAGAGACATATTATTCAAATGGATATATTTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGTTATGCACGTGAGAGACATATTATTCAAATGGATATATTTCA  531

seq1  ACAGTTAAACACCTTTCAAGATAGACAGATACATGCTCATGTTCTCTGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAAACACCTTTCAAGATAGACAGATACATGCTCATGTTCTCTGTG  581

seq1  ATGGTATTCAGCTGCTATTACAGCATATGCTGCCTCACAAATAAAAATAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTCAGCTGCTATTACAGCATATGCTGCCTCACAAATAAAAATAC  631

seq1  TATTGCTCATTGATGATATGACAAAACTTACAGAGTTGTAGGAACCTCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCATTGATGATATGACAAAACTTACAGAGTTGTAGGAACCTCTA  681

seq1  AACTGATGTCATCATTGCATGTGATGTGCTAGTCCTCATGGTTATCAGTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGTCATCATTGCATGTGATGTGCTAGTCCTCATGGTTATCAGTA  731

seq1  ACTAAAGAGTTATTTAATGGTTCAGCACTATACGGACCTAGAAGGTCTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAGTTATTTAATGGTTCAGCACTATACGGACCTAGAAGGTCTCA  781

seq1  TAATTCCCTACTCTCGTGTTGTTCATTTCTATAATAAATTAACTGGAACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCTACTCTCGTGTTGTTCATTTCTATAATAAATTAACTGGAACC  831

seq1  ACAAAGTTTTATTGGTTGGCAAAATTTCTAAAAGGCTGTTAGGTCTGTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTTATTGGTTGGCAAAATTTCTAAAAGGCTGTTAGGTCTGTTG  881

seq1  ACAAGAACTGTATAAGGACAATGTGAAGGGAAACATTCTTTGAATAATTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAACTGTATAAGGACAATGTGAAGGGAAACATTCTTTGAATAATTA  931

seq1  ATTCAAATACCTGAGACTTCAGAATGAAGACATGTTTGTCAAATCTGTAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATACCTGAGACTTCAGAATGAAGACATGTTTGTCAAATCTGTAT  981

seq1  TTTTTCATGTTTTAGCATTTCTCTGAACTCTAGAATTCATAAATTCATAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATGTTTTAGCATTTCTCTGAACTCTAGAATTCATAAATTCATAG  1031

seq1  AGTTCATCAATTCTCACATTTTCAAAAATATTTCCTTTGACATTTATTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCAATTCTCACATTTTCAAAAATATTTCCTTTGACATTTATTAT  1081

seq1  CCTATAGCAAATTCCTTCACATTTTAATTTTACAAAATATTTTGGAGGAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGCAAATTCCTTCACATTTTAATTTTACAAAATATTTTGGAGGAA  1131

seq1  TTC  1147
      |||
seq2  TTC  1134