BAC Information

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BAC

Clone NameB6Ng01-292I20
Chromosome1 (Build37)
Map Location 129,092,479 - 129,262,083
singlet/doubletdoublet
Overlap geneMgat5, LOC667090
Upstream geneE030049G20Rik, LOC383559
Downstream geneTmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292I20.bB6Ng01-292I20.g
ACCGA089163GA089164
length1,201875
definitionB6Ng01-292I20.b B6Ng01-292I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,260,885 - 129,262,083)(129,092,479 - 129,093,352)
sequence
gaattctaactaagctcccttgatgttggaacctgaaggatcacctgaag
atgaagggctaggaaacacagagcagacagcagaagtggtccaggttctc
agcctgactgctgacagctactgctgacctgcatcccacgggagtggcag
agaagggctaccactaataggacagaaacggtctagaaaggattcgcttc
aaggctcagaagcccactggcatctttgggagcggaaaacgatggagggt
gttgggatgaacagacataacttctactttaccttgattttcccctcgca
gtgggggtagccatccataggaggcaatacacatttttcctgaactccat
taatgatatctgcaaaaaatgggaaacaaaagaaaccatgagaaccataa
cacagaagcccaacatcacagtccacgtaggctgaaggacaaactgaaat
agagagttctccgtggaggcaaggttctgatccatgcaacccctccagct
acaggtatggctgccaccacagcagaacactgttgctgggagtcagggga
gtagtggtaagaatgaaaatggcccccacggactcacagggagcagcatc
attggagatggggccttgttagaggaagtgcatcacttggggtgggctct
ggggtttcagaggctcaagccaggtccagtggctcactgtcggtgctgcc
tgcagatccggatgtggaactctcagctacctctccagcaccacatctgc
ctgcatgccaccacaataatggactgaacctctgaactgcaagccagccc
cagttaaatggtgtcctttataagagttgttgtggtcatggtgtctcttc
acacaatagaaaccctaactatgactggggccatgccatcaacaaagaag
attttcttgggatcttagcagtccttacaaagaaagggtatgtcagcatc
tatgacagtcactcttcaccccggccccccatctgcttgttgctcatacg
tgcatgcaggggaggctagcggaacaatctcatgtgacatttcctcagga
cattcatagtttttgttttatttatgagaatatgggtctcttcactgacc
tgaactccactgcatagcctaggcttgcttgtcagcaagtcccaagatct
cctgactctaactcattaggctgtaattacagatattgccaacacatgtg
g
gaattcacatgtctctgtctctccatgttataagcacataccatctcacc
tagattattttaaacacaagtcttggggattgaactctgctcttcaaact
tgcaaggcaagcactttgcacaccgtctctccagctaggatcttgctttc
agtctgatcaccagcatagtgagattacagatctgagctgttctcagcca
ctgtgtttgtgtctgtggcagtttgctactgctgtgatagaccaccatgg
taggtttgctatcagacagttaggcggccaggggatagggagatagctca
gcagttaagagcactattgctgttgcagaggatcaagggttggttcctag
gagctccacttccaaaatacacagtaatgacaataagctccaaatggtaa
caacactgatttaaccagtgcagactgtatacacgtactgagacgtcatt
gccaattgagtatatacacggtaatggttacatgggaatcataaattttt
aaattcaggcatgattgcaggcacctatgttcccataatctcagcctttg
ggagatagatgtaggcaaatcataatttcatagttatcctcagacagata
aggagtttgaggtcatcccaggccatagagactctgtcttaagtaaacaa
acaaataaataaacaaacaaaaacccctagaggaccaaaatattttaata
tgttttttgggttttgtttttgttttttgtttttcgagacagggtttctc
tgtgtaaccttgtgtgtcctggaacttactctgtagaccaggctggcctc
aaactcagaaatccacctgcctctgtctcccaagtgctagaattaaaagc
gtgagccaccactgactgggctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129260885_129262083
seq2: B6Ng01-292I20.b_46_1246 (reverse)

seq1  CCACATGTGTTGGCACATACTTGTAATCCCAGCACTAGGGAGGTAGAGGC  50
      ||||||||||||||| |||  ||||||  |||| |||  ||| ||||| |
seq2  CCACATGTGTTGGCA-ATATCTGTAATTACAGC-CTAATGAGTTAGAGTC  48

seq1  AGGAAGAACCCTGGGACTTGCTGGACAGCCAGCCTAGCCTATGCAGTGAG  100
      ||||   | | ||||||||||||   ||| ||||||| ||||||||||  
seq2  AGGA--GATCTTGGGACTTGCTGACAAGCAAGCCTAGGCTATGCAGTGGA  96

seq1  TTTCAGGCCAGTG-AGAGA-CCATA-TCTCAATAAAATAAAACAAAAACT  147
       |||||| ||||| ||||| ||||| |||||   ||||||||||||||||
seq2  GTTCAGGTCAGTGAAGAGACCCATATTCTCA--TAAATAAAACAAAAACT  144

seq1  ATGGAATGTTCCTGAGG-AATGTCACATGAGATTGTT-CGCTAGCCTCCC  195
      || ||||| |||||||| ||||||||||||||||||| ||||||||||||
seq2  AT-GAATG-TCCTGAGGAAATGTCACATGAGATTGTTCCGCTAGCCTCCC  192

seq1  CTGCATGCACGTATGAGC-ACAAGCAGATGGGGGG-CGGGGTGAAGAGTG  243
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  CTGCATGCACGTATGAGCAACAAGCAGATGGGGGGCCGGGGTGAAGAGTG  242

seq1  ACTGTCATAGATGCTGACATA-CCTTTCTTTGTAAGGACTGCTAAGATCC  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTGTCATAGATGCTGACATACCCTTTCTTTGTAAGGACTGCTAAGATCC  292

seq1  C-AGAAAATC-TCCTTGTTGATGGCATGGCCCCAGTCATAGTTAGGGTTT  340
      | |||||||| || ||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATCTTCTTTGTTGATGGCATGGCCCCAGTCATAGTTAGGGTTT  342

seq1  CTATTGTGTGAAGAGACACCATGACCACAACAACTCTTATAAAGGACACC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGTGAAGAGACACCATGACCACAACAACTCTTATAAAGGACACC  392

seq1  ATTTAACTGGGGCTGGCTTGCAGTTCAGAGGTTCAGTCCATTATTGTGGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTGGGGCTGGCTTGCAGTTCAGAGGTTCAGTCCATTATTGTGGT  442

seq1  GGCATGCAGGCAGATGTGGTGCTGGAGAGGTAGCTGAGAGTTCCACATCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCAGGCAGATGTGGTGCTGGAGAGGTAGCTGAGAGTTCCACATCC  492

seq1  GGATCTGCAGGCAGCACCGACAGTGAGCCACTGGACCTGGCTTGAGCCTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGCAGGCAGCACCGACAGTGAGCCACTGGACCTGGCTTGAGCCTC  542

seq1  TGAAACCCCAGAGCCCACCCCAAGTGATGCACTTCCTCTAACAAGGCCCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCCAGAGCCCACCCCAAGTGATGCACTTCCTCTAACAAGGCCCC  592

seq1  ATCTCCAATGATGCTGCTCCCTGTGAGTCCGTGGGGGCCATTTTCATTCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAATGATGCTGCTCCCTGTGAGTCCGTGGGGGCCATTTTCATTCT  642

seq1  TACCACTACTCCCCTGACTCCCAGCAACAGTGTTCTGCTGTGGTGGCAGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTACTCCCCTGACTCCCAGCAACAGTGTTCTGCTGTGGTGGCAGC  692

seq1  CATACCTGTAGCTGGAGGGGTTGCATGGATCAGAACCTTGCCTCCACGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTGTAGCTGGAGGGGTTGCATGGATCAGAACCTTGCCTCCACGGA  742

seq1  GAACTCTCTATTTCAGTTTGTCCTTCAGCCTACGTGGACTGTGATGTTGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCTATTTCAGTTTGTCCTTCAGCCTACGTGGACTGTGATGTTGG  792

seq1  GCTTCTGTGTTATGGTTCTCATGGTTTCTTTTGTTTCCCATTTTTTGCAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTGTTATGGTTCTCATGGTTTCTTTTGTTTCCCATTTTTTGCAG  842

seq1  ATATCATTAATGGAGTTCAGGAAAAATGTGTATTGCCTCCTATGGATGGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTAATGGAGTTCAGGAAAAATGTGTATTGCCTCCTATGGATGGC  892

seq1  TACCCCCACTGCGAGGGGAAAATCAAGGTAAAGTAGAAGTTATGTCTGTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCACTGCGAGGGGAAAATCAAGGTAAAGTAGAAGTTATGTCTGTT  942

seq1  CATCCCAACACCCTCCATCGTTTTCCGCTCCCAAAGATGCCAGTGGGCTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAACACCCTCCATCGTTTTCCGCTCCCAAAGATGCCAGTGGGCTT  992

seq1  CTGAGCCTTGAAGCGAATCCTTTCTAGACCGTTTCTGTCCTATTAGTGGT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTTGAAGCGAATCCTTTCTAGACCGTTTCTGTCCTATTAGTGGT  1042

seq1  AGCCCTTCTCTGCCACTCCCGTGGGATGCAGGTCAGCAGTAGCTGTCAGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCTCTGCCACTCCCGTGGGATGCAGGTCAGCAGTAGCTGTCAGC  1092

seq1  AGTCAGGCTGAGAACCTGGACCACTTCTGCTGTCTGCTCTGTGTTTCCTA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCTGAGAACCTGGACCACTTCTGCTGTCTGCTCTGTGTTTCCTA  1142

seq1  GCCCTTCATCTTCAGGTGATCCTTCAGGTTCCAACATCAAGGGAGCTTAG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCATCTTCAGGTGATCCTTCAGGTTCCAACATCAAGGGAGCTTAG  1192

seq1  TTAGAATTC  1199
      |||||||||
seq2  TTAGAATTC  1201

seq1: chr1_129092479_129093352
seq2: B6Ng01-292I20.g_64_938

seq1  GAATTCACATGTCTCTGTCTCTCCATGTTATAAGCACATACCATCTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTCTCTGTCTCTCCATGTTATAAGCACATACCATCTCACC  50

seq1  TAGATTATTTTAAACACAAGTCTTGGGGATTGAACTCTGCTCTTCAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTATTTTAAACACAAGTCTTGGGGATTGAACTCTGCTCTTCAAACT  100

seq1  TGCAAGGCAAGCACTTTGCACACCGTCTCTCCAGCTAGGATCTTGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCAAGCACTTTGCACACCGTCTCTCCAGCTAGGATCTTGCTTTC  150

seq1  AGTCTGATCACCAGCATAGTGAGATTACAGATCTGAGCTGTTCTCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATCACCAGCATAGTGAGATTACAGATCTGAGCTGTTCTCAGCCA  200

seq1  CTGTGTTTGTGTCTGTGGCAGTTTGCTACTGCTGTGATAGACCACCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGTGTCTGTGGCAGTTTGCTACTGCTGTGATAGACCACCATGG  250

seq1  TAGGTTTGCTATCAGACAGTTAGGCGGCCAGGGGATAGGGAGATAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTGCTATCAGACAGTTAGGCGGCCAGGGGATAGGGAGATAGCTCA  300

seq1  GCAGTTAAGAGCACTATTGCTGTTGCAGAGGATCAAGGGTTGGTTCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAAGAGCACTATTGCTGTTGCAGAGGATCAAGGGTTGGTTCCTAG  350

seq1  GAGCTCCACTTCCAAAATACACAGTAATGACAATAAGCTCCAAATGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCACTTCCAAAATACACAGTAATGACAATAAGCTCCAAATGGTAA  400

seq1  CAACACTGATTTAACCAGTGCAGACTGTATACACGTACTGAGACGTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGATTTAACCAGTGCAGACTGTATACACGTACTGAGACGTCATT  450

seq1  GCCAATTGAGTATATACACGGTAATGGTTACATGGGAATCATAAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTGAGTATATACACGGTAATGGTTACATGGGAATCATAAATTTTT  500

seq1  AAATTCAGGCATGATTGCAGGCACCTATGTTCCCATAATCTCAGCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGGCATGATTGCAGGCACCTATGTTCCCATAATCTCAGCCTTTG  550

seq1  GGAGATAGATGTAGGCAAATCATAATTTCATAGTTATCCTCAGACAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAGATGTAGGCAAATCATAATTTCATAGTTATCCTCAGACAGATA  600

seq1  AGGAGTTTGAGGTCATCCCAGGCCATAGAGACTCTGTCTTAAGTAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTGAGGTCATCCCAGGCCATAGAGACTCTGTCTTAAGTAAACAA  650

seq1  ACAAATAAATAAACAAACAAAAACCCCTAGAGGACCAAAATATTTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAATAAACAAACAAAAACCCCTAGAGGACCAAAATATTTTAATA  700

seq1  TGTTTTTTGGGTTTTGTTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGGGTTTTGTTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTC  750

seq1  TGTGTAACCTTGTGTGTCCTGGAACTTACTCTGTAGACCAGGCTGGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACCTTGTGTGTCCTGGAACTTACTCTGTAGACCAGGCTGGCCTC  800

seq1  AAACTCAGAAATCCACCTGCCTCTGTCTCCCAAGTGCTAGAATTAAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAAATCCACCTGCCTCTGTCTCCCAAGTGCTAGAATTAAAAGC  850

seq1  GTGAGCCACCACTGACT-GGCTTTT  874
      ||||||||||||||||| |||||||
seq2  GTGAGCCACCACTGACTGGGCTTTT  875