BAC Information

Click to search

BAC

Clone NameB6Ng01-292O16
Chromosome1 (Build37)
Map Location 70,453,740 - 70,619,921
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneIkzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292O16.bB6Ng01-292O16.g
ACCGA089429GA089430
length1,176563
definitionB6Ng01-292O16.b B6Ng01-292O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,618,736 - 70,619,921)(70,453,740 - 70,454,308)
sequence
gaattctgaaaacatctcagaaatatctaagaagagatggtccatgaatt
gggatctatttattacatgtatattacttatcttatgaacagaatactat
gagctatccatgaaatggtagctaatttatcaaatatcaaaaaagtctat
ggggggcctacacattctatgccagaattctcaaaataatattctcatgg
tctttagagattttagctgagaatagagcttaagttcagactataattat
atggctacatagatgataagaatgcttctttagtttggatctcataagca
ttcacaatcttcccacttcttcaaaaactataacattcttaaaatagtgc
ctgcctgttgtgatgtgctgaaattcaaagatcggaagtacatgctatag
atatggaaagaagggatcacctgggaagaatgagttctgtaaaatgggga
aatgccaaatagatgactccaaaactaaactctccattgacagatttgcc
gtgggatttatgattatttcccattctcaggtcagtttgaggatgcagga
tacattcaggggagtgacatgaatccagacaccccagattggtgccccaa
aatatctctgtgtatattcatcacttaacttggtagtatgatgataaaat
atgacaaagtcaaaacatggtcctcagaaagtatggccatgtagcttcct
taaacaatcagctttttacaaatacctaagctcataggattttcattatg
tgaaacttgaacagcttaaaatatacctatcactccctgaccccccaaga
ggcaaatgctcagttgcaggagctgtaattattattgagcttcaattaca
agctctaattgatctgaatttgctagtgggacacctgatgggaattattt
acacaataatatagtgtgacagatggttaggccatagttatcaaagtcac
agatgaaataagatattccccacccccttccatattctattaatagagca
ggaagaatttaatgtggaaatgcttccagaaaacatccattccacctcac
ttactctaccatatactacataaaatagtgtaagtttatacaataaatgc
acaaatatttctatgtaataaggttgtagaagtaatcatagtttcagtat
atactgctgttgtccatgactgttac

attgtgccatggtgtgtggtgaggcacactggcaagcaggtatctatggc
ctgtggggctgtgccctggtgggcatgtctgtgggtggcctggctgccca
cagtctctcagtgtcttcctccttctgagctgtgtggcctttatgagtcc
taggcatagaacaattttgggctttggctaccaagacaggcattaagcta
agatgaataaacgaatgttcttcccctgactgctgtaagaacactatcat
caacaaggtgtctctgcccattgccagagggagctctttacattcctatg
caagaagtttatataatcacattgataaaataaaaaaaaatgactgtgga
aatcaaagaaaaaaactagacattgtgttaaatctaaaataaatgagaaa
gcagagtatatagtctttttttttttttctctcgaccaagacagggtttc
tctgtgtagccctggcttcctttgaactcaatttatagagcaggctgacc
tctgactttgagatccacaagcctctgcctcccaatcagattatatattc
gtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_70618736_70619921
seq2: B6Ng01-292O16.b_52_1227 (reverse)

seq1  GTAACAGCCAT-GACAACAGCAGTATATACTGAAACTTATGATTACCTTC  49
      ||||||| ||| |||||||||||||||||||||||| |||||||| ||||
seq2  GTAACAGTCATGGACAACAGCAGTATATACTGAAAC-TATGATTA-CTTC  48

seq1  TACAACCTCTAATACATTAGAATATTTGTGCAATTTATTGTATTAAACTT  99
      |||||||| || |||||   ||||||||||| |||||||||| ||||| |
seq2  TACAACCT-TATTACATAGAAATATTTGTGC-ATTTATTGTA-TAAAC-T  94

seq1  TACACTTATTTTATGTAGTATAATTGGTAGAGTTAAGTGAGGTGGAAATG  149
      ||||| ||||||||||||||||  |||||||| |||||||||||| ||||
seq2  TACAC-TATTTTATGTAGTATA--TGGTAGAG-TAAGTGAGGTGG-AATG  139

seq1  GATTGTTTTCTGGAAGCATTTCCACATTAAATTCTTCCTGCTCTATTAAT  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TGTTTTCTGGAAGCATTTCCACATTAAATTCTTCCTGCTCTATTAAT  188

seq1  AGAATATGGAAGGGG--TGGGAATATTCTTATTTCATCTGTGACTTTGAT  247
      |||||||||||||||   ||||||| ||||||||||||||||||||||||
seq2  AGAATATGGAAGGGGGTGGGGAATA-TCTTATTTCATCTGTGACTTTGAT  237

seq1  AACTATGGCCTAACCATCTGTCACACTATATTATTGTGTAAATAATTCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGGCCTAACCATCTGTCACACTATATTATTGTGTAAATAATTCCC  287

seq1  ATCAGGTGTCCCACTAGCAAATTCAGATCAATTAGAGCTTGTAATTGAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGTCCCACTAGCAAATTCAGATCAATTAGAGCTTGTAATTGAAG  337

seq1  CTCAATAATAATTACAGCTCCTGCAACTGAGCATTTGCCTCTTGGGGGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAATAATTACAGCTCCTGCAACTGAGCATTTGCCTCTTGGGGGGT  387

seq1  CAGGGAGTGATAGGTATATTTTAAGCTGTTCAAGTTTCACATAATGAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTGATAGGTATATTTTAAGCTGTTCAAGTTTCACATAATGAAAA  437

seq1  TCCTATGAGCTTAGGTATTTGTAAAAAGCTGATTGTTTAAGGAAGCTACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGAGCTTAGGTATTTGTAAAAAGCTGATTGTTTAAGGAAGCTACA  487

seq1  TGGCCATACTTTCTGAGGACCATGTTTTGACTTTGTCATATTTTATCATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATACTTTCTGAGGACCATGTTTTGACTTTGTCATATTTTATCATC  537

seq1  ATACTACCAAGTTAAGTGATGAATATACACAGAGATATTTTGGGGCACCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACCAAGTTAAGTGATGAATATACACAGAGATATTTTGGGGCACCA  587

seq1  ATCTGGGGTGTCTGGATTCATGTCACTCCCCTGAATGTATCCTGCATCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGTGTCTGGATTCATGTCACTCCCCTGAATGTATCCTGCATCCT  637

seq1  CAAACTGACCTGAGAATGGGAAATAATCATAAATCCCACGGCAAATCTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGACCTGAGAATGGGAAATAATCATAAATCCCACGGCAAATCTGT  687

seq1  CAATGGAGAGTTTAGTTTTGGAGTCATCTATTTGGCATTTCCCCATTTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGAGTTTAGTTTTGGAGTCATCTATTTGGCATTTCCCCATTTTA  737

seq1  CAGAACTCATTCTTCCCAGGTGATCCCTTCTTTCCATATCTATAGCATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCATTCTTCCCAGGTGATCCCTTCTTTCCATATCTATAGCATGT  787

seq1  ACTTCCGATCTTTGAATTTCAGCACATCACAACAGGCAGGCACTATTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCGATCTTTGAATTTCAGCACATCACAACAGGCAGGCACTATTTTA  837

seq1  AGAATGTTATAGTTTTTGAAGAAGTGGGAAGATTGTGAATGCTTATGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTATAGTTTTTGAAGAAGTGGGAAGATTGTGAATGCTTATGAGA  887

seq1  TCCAAACTAAAGAAGCATTCTTATCATCTATGTAGCCATATAATTATAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTAAAGAAGCATTCTTATCATCTATGTAGCCATATAATTATAGT  937

seq1  CTGAACTTAAGCTCTATTCTCAGCTAAAATCTCTAAAGACCATGAGAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTAAGCTCTATTCTCAGCTAAAATCTCTAAAGACCATGAGAATA  987

seq1  TTATTTTGAGAATTCTGGCATAGAATGTGTAGGCCCCCCATAGACTTTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGAGAATTCTGGCATAGAATGTGTAGGCCCCCCATAGACTTTTT  1037

seq1  TGATATTTGATAAATTAGCTACCATTTCATGGATAGCTCATAGTATTCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTGATAAATTAGCTACCATTTCATGGATAGCTCATAGTATTCTG  1087

seq1  TTCATAAGATAAGTAATATACATGTAATAAATAGATCCCAATTCATGGAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGATAAGTAATATACATGTAATAAATAGATCCCAATTCATGGAC  1137

seq1  CATCTCTTCTTAGATATTTCTGAGATGTTTTCAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCTTAGATATTTCTGAGATGTTTTCAGAATTC  1176


seq1: chr1_70453740_70454308
seq2: B6Ng01-292O16.g_66_634

seq1  GAATTCATTGTGCCATGGTGTGTGGTGAGGCACACTGGCAAGCAGGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGCCATGGTGTGTGGTGAGGCACACTGGCAAGCAGGTATC  50

seq1  TATGGCCTGTGGGGCTGTGCCCTGGTGGGCATGTCTGTGGGTGGCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCTGTGGGGCTGTGCCCTGGTGGGCATGTCTGTGGGTGGCCTGGC  100

seq1  TGCCCACAGTCTCTCAGTGTCTTCCTCCTTCTGAGCTGTGTGGCCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACAGTCTCTCAGTGTCTTCCTCCTTCTGAGCTGTGTGGCCTTTAT  150

seq1  GAGTCCTAGGCATAGAACAATTTTGGGCTTTGGCTACCAAGACAGGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTAGGCATAGAACAATTTTGGGCTTTGGCTACCAAGACAGGCATT  200

seq1  AAGCTAAGATGAATAAACGAATGTTCTTCCCCTGACTGCTGTAAGAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGATGAATAAACGAATGTTCTTCCCCTGACTGCTGTAAGAACAC  250

seq1  TATCATCAACAAGGTGTCTCTGCCCATTGCCAGAGGGAGCTCTTTACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCAACAAGGTGTCTCTGCCCATTGCCAGAGGGAGCTCTTTACATT  300

seq1  CCTATGCAAGAAGTTTATATAATCACATTGATAAAATAAAAAAAAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCAAGAAGTTTATATAATCACATTGATAAAATAAAAAAAAATGAC  350

seq1  TGTGGAAATCAAAGAAAAAAACTAGACATTGTGTTAAATCTAAAATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAATCAAAGAAAAAAACTAGACATTGTGTTAAATCTAAAATAAAT  400

seq1  GAGAAAGCAGAGTATATAGTCTTTTTTTTTTTTTCTCTCGACCAAGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCAGAGTATATAGTCTTTTTTTTTTTTTCTCTCGACCAAGACAG  450

seq1  GGTTTCTCTGTGTAGCCCTGGCTTCCTTTGAACTCAATTTATAGAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGCTTCCTTTGAACTCAATTTATAGAGCAGG  500

seq1  CTGACCTCTGACTTTGAGATCCACAAGCCTCTGCCTCCCAATCAGATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTGACTTTGAGATCCACAAGCCTCTGCCTCCCAATCAGATTAT  550

seq1  ATATTCGTGTGTGTGTGTG  569
      |||||||||||||||||||
seq2  ATATTCGTGTGTGTGTGTG  569


| Home | SequenceCutter | Blast | Download |