BAC Information

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BAC

Clone NameB6Ng01-293J12
Chromosome1 (Build37)
Map Location 49,488,843 - 49,489,985
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430
Downstream geneLOC100041981, EG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293J12.bB6Ng01-293J12.g
ACCGA089936GA089937
length1,133939
definitionB6Ng01-293J12.b B6Ng01-293J12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactttaatttcaaatattaagaaatacattgtgtcaattttta
tcctgcaataaacatccctattatcaaacactcacctattttgaacttca
cactgcagttgttttctttctttctttctttctttctttctttctttctt
tctttctttctttctctctctctctctctctctctctctctctctctctt
tctttctttctttctcaatttgttttatgtgtaaaatgatggattttaca
tctatggtatttcataggcttctaggattatcagaaacccaagccagcaa
ggtagccctagataaagatactttccccagaaacctgaaaatacaagctg
aagcaccaaaatcaacagagagtgccatcacctatccagctaccatcact
accaccagtactaccataaattaaattaatttttaaataggtttttaaat
atttttgaaactaaaataaaaatacataatttcccatatttccttttctc
cctgtgaatctaatccatagctcccttgctctctcaagtttatgatctct
atttcattatacacacacacacacacacacacacacacacacacacgcac
acacacacacacatgcacacacacagaggtattccatggggaagactaag
tctcccatctgacatatttcttagttgccattagttgtttaatgttgagt
tcctatgagatctttctcttttagagactccaggtgtttttcttgttcat
accttgtttaggcaactctcttgatgagacttcatatgcatattttcctg
atatttgtaggggacaaatatctcatagcagatgtcctgtttgttgtaaa
attgcagtctttgacttcttctaatatgatccctgaatttttggcgtaaa
acttactgttatagatgtatctgcatgggttgaggacctcaaaatcattg
actgtattttggtttgatattgtatgtcaaccagttaatgtgtatatggt
atgaacatataatatagagtaatgatattatgctacattaatacacttga
taatatgatagacatcctcaaactaaataatgtgaataagctactcatat
gcctaaatataggcaatattatattcataaaaa

gaattcctgatctctccaatactgttaacatgaaggtgcattgtgtttta
tcaagggctttttttttttggcatctaatgagatgatcatgtggttttat
ttttcctttgtgtttgtttatatagtggattaattggtggatttccatac
attgaatcatcccttcattttcactggattttagaaagtctttaatttct
ttattttatgcatgaccaagtcacattttttaaaagttgtgcattttcca
tgagtatatggagtttctgttgtttctgttttcttgaagttcatccttaa
ataaattgcaagagatccttttatctgttgagccttgcttcatgcccagt
tacaagttcaattttgcagaagttgctgtgaggtgctgagaagcaggtat
attcttttgttttgtggtgaaaattctgtagatatctgttccattcactt
gattcatgacacctgttactttcattgtttctcttttgatgacctgtacg
ttggtgagaatgagatattgaagccgcccactattgtgtggagttcaatg
tatgatttgagatttagtaatgtttctttaatgaattctttgcatttggg
gcatcaattttcttaattgagatgtcctcttggtggatttctttttctct
gatgagtctgtagtgttcttcccaatttctttttattaaaaccttcttct
aacccttttactctgaggtagtgcctaaatttgtttctgagatgtgtttt
ctttgtttgtagtagaatgattgattcttgttttttgtttttctatggta
ttagctacaaattcttgtaatggaagtttttctattttagtaccctcttt
ttaggactgtattaggaagaatataatggtttaaatttgggttttaccat
ggtaaatatcatggttttctctcatctatgggtgattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49488843_49489985
seq2: B6Ng01-293J12.b_45_1177 (reverse)

seq1  TTTTTATGAATATAAATATTTGCTATATTTTAAGCATATGAGTAGCTTTA  50
      ||||||||||||| ||||||  ||||| |||| ||||||||||||| |||
seq2  TTTTTATGAATAT-AATATTGCCTATA-TTTAGGCATATGAGTAGC-TTA  47

seq1  TTCAACATTATTTAGTTTGA-GATGTCTAATCATTATTATCAAGTGTATT  99
      ||| |||||||||||||||| ||||||| |||| ||||||||||||||||
seq2  TTC-ACATTATTTAGTTTGAGGATGTCT-ATCA-TATTATCAAGTGTATT  94

seq1  TTAATTGTAGCATAATATTCATTACTCTATTATTATATGTTCATACCATA  149
         | |||||||||||| ||||||||||| ||||||||||||||||||||
seq2  ---AATGTAGCATAATA-TCATTACTCTA-TATTATATGTTCATACCATA  139

seq1  TACACATTAACTGGTTGACATACAATATCAAACCAAAATACAGTCAATGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTAACTGGTTGACATACAATATCAAACCAAAATACAGTCAATGA  189

seq1  TTTTGAGGTCCTCAACCCATGCAGATACATCTATAACAGTAAGTTTTACG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGTCCTCAACCCATGCAGATACATCTATAACAGTAAGTTTTACG  239

seq1  CCAAAAATTCAGGGATCATATTAGAAGAAGTCAAAGACTGCAATTTTACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATTCAGGGATCATATTAGAAGAAGTCAAAGACTGCAATTTTACA  289

seq1  ACAAACAGGACATCTGCTATGAGATATTTGTCCCCTACAAATATCAGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGGACATCTGCTATGAGATATTTGTCCCCTACAAATATCAGGAA  339

seq1  AATATGCATATGAAGTCTCATCAAGAGAGTTGCCTAAACAAGGTATGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCATATGAAGTCTCATCAAGAGAGTTGCCTAAACAAGGTATGAAC  389

seq1  AAGAAAAACACCTGGAGTCTCTAAAAGAGAAAGATCTCATAGGAACTCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACACCTGGAGTCTCTAAAAGAGAAAGATCTCATAGGAACTCAA  439

seq1  CATTAAACAACTAATGGCAACTAAGAAATATGTCAGATGGGAGACTTAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACAACTAATGGCAACTAAGAAATATGTCAGATGGGAGACTTAGT  489

seq1  CTTCCCCATGGAATACCTCTGTGTGTGTGCATGTGTGTGTGTGTGTGCGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCATGGAATACCTCTGTGTGTGTGCATGTGTGTGTGTGTGTGCGT  539

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAATGAAATAGAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAATGAAATAGAGAT  589

seq1  CATAAACTTGAGAGAGCAAGGGAGCTATGGATTAGATTCACAGGGAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTTGAGAGAGCAAGGGAGCTATGGATTAGATTCACAGGGAGAAA  639

seq1  AGGAAATATGGGAAATTATGTATTTTTATTTTAGTTTCAAAAATATTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATATGGGAAATTATGTATTTTTATTTTAGTTTCAAAAATATTTAA  689

seq1  AAACCTATTTAAAAATTAATTTAATTTATGGTAGTACTGGTGGTAGTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTTAAAAATTAATTTAATTTATGGTAGTACTGGTGGTAGTGAT  739

seq1  GGTAGCTGGATAGGTGATGGCACTCTCTGTTGATTTTGGTGCTTCAGCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTGGATAGGTGATGGCACTCTCTGTTGATTTTGGTGCTTCAGCTT  789

seq1  GTATTTTCAGGTTTCTGGGGAAAGTATCTTTATCTAGGGCTACCTTGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCAGGTTTCTGGGGAAAGTATCTTTATCTAGGGCTACCTTGCTG  839

seq1  GCTTGGGTTTCTGATAATCCTAGAAGCCTATGAAATACCATAGATGTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTTTCTGATAATCCTAGAAGCCTATGAAATACCATAGATGTAAA  889

seq1  ATCCATCATTTTACACATAAAACAAATTGAGAAAGAAAGAAAGAAAGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCATTTTACACATAAAACAAATTGAGAAAGAAAGAAAGAAAGAGA  939

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAA  989

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACAACTGCAGTGTGAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACAACTGCAGTGTGAAGT  1039

seq1  TCAAAATAGGTGAGTGTTTGATAATAGGGATGTTTATTGCAGGATAAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAGGTGAGTGTTTGATAATAGGGATGTTTATTGCAGGATAAAAA  1089

seq1  TTGACACAATGTATTTCTTAATATTTGAAATTAAAGTTGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAATGTATTTCTTAATATTTGAAATTAAAGTTGAATTC  1133


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