MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-293J23
Chromosome	1 (Build37)
Map Location	8,436,385 - 8,437,403
singlet/doublet	singlet
Overlap gene	Sntg1
Upstream gene	LOC665063, LOC665069, LOC100039408
Downstream gene	LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC665063 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665063
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC665069 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665069
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100039408 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039408
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Sntg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71096 MGI:1918346
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039474 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039474
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 117 ESTs, 4 Proteins

name	LOC620444 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620444
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	EG665007 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665007 MGI:3644942
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC665103 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665103
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 78 ESTs, 5 Proteins pseudo : _no_value

name	LOC100039464 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 47 ESTs

name	EG620853 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620853 MGI:3648954
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins pseudo : _no_value

name	LOC665138 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665138
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Sntg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140971304 GeneID:71096 MGI:1918346
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : syntrophin, gamma 1 transcript_id : NM_027671.4

name	LOC100039474 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233594 GeneID:100039474
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 117 ESTs, 4 Proteins product : similar to Cyclin-dependent kinases regulatory subunit 2 (CKS-2) transcript_id : XM_001472887.1

name	LOC100039464 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233592 GeneID:100039464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs product : similar to gag protein, transcript variant 2 transcript_id : XM_001472866.1

name	LOC100039464 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149233590 GeneID:100039464
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs product : similar to gag protein, transcript variant 1 transcript_id : XM_001472850.1

name	Sntg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560093 GeneID:71096 MGI:1918346
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : syntrophin, gamma 1 protein_id : NP_081947.2

name	LOC100039474 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233595 GeneID:100039474
definition	codon_start : 1 product : similar to Cyclin-dependent kinases regulatory subunit 2 (CKS-2) protein_id : XP_001472937.1

name	LOC100039464 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233591 GeneID:100039464
definition	codon_start : 1 product : similar to gag protein isoform 1 protein_id : XP_001472900.1

name	LOC100039464 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149233593 GeneID:100039464
definition	codon_start : 1 product : similar to gag protein isoform 2 protein_id : XP_001472916.1

name	LOC665063 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665063
definition	number : 1 pseudo : _no_value

name	LOC665063 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665063
definition	number : 2 pseudo : _no_value

name	LOC665063 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665063
definition	number : 3 pseudo : _no_value

name	LOC665063 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665063
definition	number : 4 pseudo : _no_value

name	LOC665063 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665063
definition	number : 5 pseudo : _no_value

name	LOC665069 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665069
definition	number : 1 pseudo : _no_value

name	LOC100039408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039408
definition	number : 5 pseudo : _no_value

name	LOC100039408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039408
definition	number : 4 pseudo : _no_value

name	LOC100039408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039408
definition	number : 3 pseudo : _no_value

name	LOC100039408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039408
definition	number : 2 pseudo : _no_value

name	LOC100039408 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039408
definition	number : 1 pseudo : _no_value

name	LOC620444 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620444
definition	number : 1 pseudo : _no_value

name	EG665007 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665007
definition	number : 1 pseudo : _no_value

name	EG620853 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620853
definition	number : 3 pseudo : _no_value

name	EG620853 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620853
definition	number : 2 pseudo : _no_value

name	EG620853 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:620853
definition	number : 1 pseudo : _no_value

name	LOC665138 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665138
definition	number : 1 pseudo : _no_value

name	LOC665138 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665138
definition	number : 2 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:122890
definition	standard_name : 07.MMHAP53FLC1.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:186238
definition	standard_name : M-11219

name	(CDS detail)
type	STS
link
xref	UniSTS:128924
definition	standard_name : D1Mit65

name	(CDS detail)
type	STS
link
xref	UniSTS:207122
definition	standard_name : BB175276

name	(CDS detail)
type	STS
link
xref	UniSTS:123774
definition	standard_name : 27.MMHAP17FA6.seq

name	LOC665103 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149233596 GeneID:665103
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 78 ESTs, 5 Proteins product : similar to Translocase of inner mitochondrial membrane 23 homolog (yeast) pseudo : _no_value transcript_id : XR_030934.1

clone name	MSMg01-510H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-234I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325P17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-271O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488E09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-045P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230L15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182J01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-197C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341I16
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-293J23.b	B6Ng01-293J23.g
ACC	GA089958	GA089959
length	971	1,021
definition	B6Ng01-293J23.b	B6Ng01-293J23.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctccatttagttctataccccatttgtgtgtgtgtgtgtgtgaat aacttgagttctttgcataccttggatattagccctctatcagctgtggg gttagtgaagatattttcccaatttgtagattgccgatttgtcttattga ctatgctctttgccttatagaagttttctggtttcatgagttcccattta tcaattcttgatcttagtcattggagttctgtttaggaaatttcaccctg tgccaaagagttcaacggtctttctcactttctcttctattagattcagt gtatctggttttatgttgagatccttgatccacttggattttatctttgt acaaggtgacaaatatgggcctattttcgttcttctacatatagacagcc agttagatcagcaccatttattgaagatgctttcttattttccattgtat gtttttggtatctttgtcaaagataaagtgactgtatgtgtgtggtttta tttctgggtcttcaattctattccattgatcaacatggctgtctctgtac caataccatgaagtttttaatcactattgctctctagtaagcttgagcag acagggattgtgattgccccagttgttctcaacaagcagctgaaagagtc agatgcagatatttgcacccaaccattggacagaagcagctgacccctct tgttgaattatggaagggtgaaagaagctgaggagaaaggcaaccctgta ggaggaacagcagtctcagttaatctgaacccccgtgatctcttaaacgc tggatcactaagcagtcagcatacaccagctgatatgagacctccaacac acgtatagtagaggactttggggtcttttgtcattcagagatgattcacc tgactcacaggagactggaggccccaaagagtttagaggtcagtgggggt ggggaggtagggacatccaca	gaattcatagaaccttttgtctcttgactacatgagaagttgaaatacaa tacctcatagaattggttctatggttggtctggaacaagttacagggaaa tttgaagttaattaggttcttaccccttgaaatagattcatagttcaagt accatcatacgtggatacttatttttcaaacacatatgacagatatgaaa ctaaaagagggtgaagttagttgaaatgtttggatatatcattttgttat ttgaaaatgtgaatacactaacatgatgaatattgtttaattttgaaata acaaatgtctgttttgttaacattggtaaaaattagacttgggccttata gtatatgcctataatcccagcaattgggaggtaaaggcatgagaagtagt taactgtcatcatcagctatttaaggcaatttgattccagtttgtgctgc atgatatgctgtctcaacataataaaataaataggcagaaaatgagaatg ttataatgtgattaatactactgaagaactcaaaactgttttgaaatata tttatattataaggactacaaaacaatgttctctaccttcaaatgtgtct atttattattttatgctttattttatacctttaataaaagtataaatact agcatatttatttgaaaggatgatccatgaaagcaaacactttgagtata ttcaatgtgatcatttaaagttacaattaaactttagaaaatgtagtgaa tattaagctataaaatacacaagttataaataaaatgttacatatcctag attaaaagaaataatgtgaggttcacttagggtaattttcactgacttta ttattttcccaggtcagtgaattttgggcagtaaagaacatttgtttcat aactgtaatctagttcaacaatttacttattttagaatgatggagaatat actaatttcaaaaagttatacacataaagtactatggattgattccttat ttaatctgggtggtagaaatt
quality values	Open. Hide. 49 29 23 22 58 54 58 58 28 16 58 58 45 47 62 62 62 62 54 49 62 62 62 62 62 47 47 62 62 62 62 51 54 25 37 24 47 56 37 28 37 38 43 44 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 54 42 54 56 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 42 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 54 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 49 43 62 62 62 62 62 62 62 49 38 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 54 54 58 58 58 58 58 58 54 54 54 45 54 58 58 58 49 54 58 54 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 54 41 43 48 52 58 54 58 43 54 58 58 58 58 58 58 58 58 58 58 51 54 58 54 50 58 58 58 58 58 58 58 58 51 58 53 58 58 51 49 54 58 51 58 58 58 58 58 46 58 51 50 46 47 50 47 58 58 39 38 58 58 54 58 58 36 48 43 40 48 39 39 48 39 58 48 58 49 48 50 52 53 53 58 51 53 51 50 58 54 52 51 58 54 58 58 58 52 58 40 58 52 58 50 58 33 50 58 51 41 46 35 39 51 54 58 54 50 28 43 44 50 35 47 50 50 27 50 44 43 44 42 38 52 45 54 54 32 51 41 40 54 49 47 38 33 42 44 44 50 49 54 49 51 42 54 41 41 49 40 40 52 43 54 49 34 41 32 54 42 39 49 49 54 37 32 47 42 31 38 53 52 54 12 42 51 31 53 54 45 39 49 19 33 42 40 40 40 34 33 31 33 14 34 52 26 32 37 37 32 29 32 45 45 31 32 39 53 40 31 32 52 45 32 27 31 31 45 32 39 31 31 36 36 36 40 32 21 20 18 30 28 30 30 51 31 34 45 30 33 30 37 38 38 37 16 30 26 30 28 31 27 42 30 31 31 26 31 37 25 31 31 31 33 32 30 29 28 40 30 21 31 30 30 32 32 31 31 31 42 26 27 14 33 42 38 32 22 22 32 26 29 25 30 26 37 38 36 31 22 31 38 19 28 9 39 27 16 39 47 32 27 48 46 39 31 32 34 48 46 16 29 26 30 21 28 31 21 25 22 34 16 30 27 31 32 21 33 32 26 12 17 25 23 18 21 36 32 23 31 21 24 14 38 12 21 18 31 22 18 15 6 13 11 24 24 10 7 21 21 23 33 19 29 47 25 35 19 31 20 24 19 33 8 8 4 6 48 48 48 33 14 18 43 43 22 33 9 21 22 32 15 37 28 17 14 9 30 21 18 13 32 10	Open. Hide. 62 47 56 39 62 47 47 62 62 62 54 59 59 62 59 49 59 62 62 62 62 62 62 62 62 62 59 59 59 59 62 49 62 59 59 59 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 49 49 59 62 62 62 54 54 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 54 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 62 62 54 49 49 54 62 62 62 62 62 62 62 62 62 62 59 59 50 62 48 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 49 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 49 54 58 54 58 58 58 58 58 58 58 58 58 58 58 54 58 58 54 58 58 54 58 58 58 58 58 58 58 58 49 46 58 58 58 54 58 52 58 54 58 58 58 58 58 58 58 58 58 58 54 58 58 58 45 58 58 58 54 52 58 58 58 54 41 58 58 58 58 58 58 58 58 58 47 35 47 58 58 51 52 58 58 58 58 58 58 58 58 58 58 49 58 43 51 58 47 58 46 58 58 50 58 46 58 58 45 58 51 53 49 58 58 58 51 51 51 58 58 58 58 46 38 54 50 51 58 58 54 49 52 53 52 52 58 54 58 51 58 54 54 50 58 50 58 53 53 58 51 53 51 58 58 54 53 58 54 40 58 32 28 54 38 43 39 41 37 51 51 51 58 58 43 51 52 58 53 52 53 58 50 58 51 58 51 37 47 50 49 45 49 54 39 30 54 50 54 50 51 49 52 49 37 53 54 32 33 54 49 49 37 49 35 50 24 52 52 54 39 49 54 49 51 54 53 45 42 54 54 54 47 34 54 35 45 34 45 54 54 45 37 39 52 31 39 52 40 52 42 39 53 51 54 54 41 52 42 52 36 52 37 30 27 51 32 42 34 32 51 46 31 24 52 49 40 32 52 22 14 28 42 31 40 31 32 32 46 26 34 22 27 31 42 42 51 51 42 28 46 51 41 31 31 31 30 34 26 40 30 29 51 28 30 30 25 30 39 42 31 28 47 46 24 31 30 26 46 46 12 17 35 35 30 30 32 30 31 47 43 31 37 42 34 46 46 46 8 7 46 31 23 25 19 26 24 32 31 27 30 27 32 37 48 44 39 15 46 24 34 38 33 31 31 48 35 22 32 37 26 31 31 47 23 37 30 46 31 38 32 31 28 27 32 32 34 21 24 14 29 32 32 33 20 30 26 31 24 29 29 22 22 21 44 8 20 31 12 36 29 30 44 44 38 34 28 30 20 21 31 33 28 32 33 32 16 32 32 18 19 30 23 21 24 19 19 16 47 28 32 20 43 43 48 16 10 26 20 17 29 6 30 10 33 24 32 20 47 21 21 32 4 16 27 27 16 27 26 21 15 15 24 16 11 14 13 14 21 11 27 11 34 24 9 11 11 21 13 15 34 10 7 24 21 8 19 17 10 38 22 4 11

Alignment Information

BAC End 1

BAC End 2

seq1: chr1_8436385_8437403
seq2: B6Ng01-293J23.g_64_1084 (reverse)

seq1  AATTTCTACCA-CCAGATTAAATAAGGAATCAATCCATAGTAACTTTATG  49
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AATTTCTACCACCCAGATTAAATAAGGAATCAATCCATAGT-ACTTTATG  49

seq1  TGTAATAACTTTTTGAAATTAGTATATTCTCCATCATTCTAAAATAAGT-  98
      ||| ||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGT-ATAACTTTTTGAAATTAGTATATTCTCCATCATTCTAAAATAAGTA  98

seq1  AATTGTTGAACTAGATTACAGTTATGAAACAAATGTTCTTTACTG-CCAA  147
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTGTTGAACTAGATTACAGTTATGAAACAAATGTTCTTTACTGCCCAA  148

seq1  AATTCACTGACCTGGGAAAATAATAAAGTCAGTG-AAATTACCCTAAGTG  196
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTCACTGACCTGGGAAAATAATAAAGTCAGTGAAAATTACCCTAAGTG  198

seq1  AACCTCACATTATTTCTTTTAATCTAGGATATGTAACATTTTATTTATAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACATTATTTCTTTTAATCTAGGATATGTAACATTTTATTTATAA  248

seq1  CTTGTGTATTTTATAGCTTAATATTCACTACATTTTCTAAAGTTTAATTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTATTTTATAGCTTAATATTCACTACATTTTCTAAAGTTTAATTG  298

seq1  TAACTTTAAATGATCACATTGAATATACTCAAAGTGTTTGCTTTCATGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAAATGATCACATTGAATATACTCAAAGTGTTTGCTTTCATGGA  348

seq1  TCATCCTTTCAAATAAATATGCTAGTATTTATACTTTTATTAAAGGTATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTTCAAATAAATATGCTAGTATTTATACTTTTATTAAAGGTATA  398

seq1  AAATAAAGCATAAAATAATAAATAGACACATTTGAAGGTAGAGAACATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCATAAAATAATAAATAGACACATTTGAAGGTAGAGAACATTG  448

seq1  TTTTGTAGTCCTTATAATATAAATATATTTCAAAACAGTTTTGAGTTCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTCCTTATAATATAAATATATTTCAAAACAGTTTTGAGTTCTT  498

seq1  CAGTAGTATTAATCACATTATAACATTCTCATTTTCTGCCTATTTATTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTATTAATCACATTATAACATTCTCATTTTCTGCCTATTTATTTT  548

seq1  ATTATGTTGAGACAGCATATCATGCAGCACAAACTGGAATCAAATTGCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTGAGACAGCATATCATGCAGCACAAACTGGAATCAAATTGCCT  598

seq1  TAAATAGCTGATGATGACAGTTAACTACTTCTCATGCCTTTACCTCCCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCTGATGATGACAGTTAACTACTTCTCATGCCTTTACCTCCCAA  648

seq1  TTGCTGGGATTATAGGCATATACTATAAGGCCCAAGTCTAATTTTTACCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGATTATAGGCATATACTATAAGGCCCAAGTCTAATTTTTACCA  698

seq1  ATGTTAACAAAACAGACATTTGTTATTTCAAAATTAAACAATATTCATCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAACAAAACAGACATTTGTTATTTCAAAATTAAACAATATTCATCA  748

seq1  TGTTAGTGTATTCACATTTTCAAATAACAAAATGATATATCCAAACATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTGTATTCACATTTTCAAATAACAAAATGATATATCCAAACATTT  798

seq1  CAACTAACTTCACCCTCTTTTAGTTTCATATCTGTCATATGTGTTTGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACTTCACCCTCTTTTAGTTTCATATCTGTCATATGTGTTTGAAA  848

seq1  AATAAGTATCCACGTATGATGGTACTTGAACTATGAATCTATTTCAAGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTATCCACGTATGATGGTACTTGAACTATGAATCTATTTCAAGGG  898

seq1  GTAAGAACCTAATTAACTTCAAATTTCCCTGTAACTTGTTCCAGACCAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAACCTAATTAACTTCAAATTTCCCTGTAACTTGTTCCAGACCAAC  948

seq1  CATAGAACCAATTCTATGAGGTATTGTATTTCAACTTCTCATGTAGTCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAACCAATTCTATGAGGTATTGTATTTCAACTTCTCATGTAGTCAA  998

seq1  GAGACAAAAGGTTCTATGAATTC  1019
      |||||||||||||||||||||||
seq2  GAGACAAAAGGTTCTATGAATTC  1021

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information