BAC Information

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BAC

Clone NameB6Ng01-294F12
Chromosome1 (Build37)
Map Location 14,480,597 - 14,490,211
singlet/doubletdoublet
Overlap genenone
Upstream geneEG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
Downstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294F12.bB6Ng01-294F12.g
ACCGA090497GA090498
length1,1381,127
definitionB6Ng01-294F12.b B6Ng01-294F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,489,076 - 14,490,211)(14,480,597 - 14,481,707)
sequence
gaattctcaaagagattctatcttctgaatctagtacagctaatatttta
aataaatgacattcctaaatgagcaatagtgaaacaattctccacatctt
caaattaaaaaactgatttaaaattttatatgctttaatccctaaaccat
aggaaactaggtttccacagagtaaatatatttggattgtgacttaccct
atatgttttaagaaacagcaagaaaaaggattgaaaggattattgtagta
accatacatattttaaagaatattaaaaaaaataatttatttctgaacta
cagggattagccctttatttaaaaccaatgaccttcctataagacaagaa
gctctggtagtcttcggtgaactttcatcagacacttgatgttgtaattt
gaaattattgttgctggtccttaaattaaaaaaaaaatggatggtttaag
ttttaagaggttctgctgtcactttttgttatgggagttctttactcgtg
aatggatataaatgataagaaatggattaaaagttgtgaagctatccttg
tgagctgggttctttggcttctacttaggtctaaacagtgtgggagcctc
actcaggtaacatcagttatcaccacattccttctacagtctttctgact
cagtatattatgctctgttttggaaagtcctaaatctgcatacatgtaag
catcctacagtttaaaataaacaaaacaaaacaaaccagaaaagcagcct
ttgcttagatttctgcacccccgcccccctctggtgtggtgtctggccct
atctctaatctgtggtctttgaagggttagttctcactgttctgagtcag
agtggtgtctaacacagtcaataggtactcctgtggtgactgacagaaac
agcaataaagcttgtgagtctagatggttttgaaagactgtacaaaaaaa
cctacattcatgtgggtgcccaccttccccaaaacacacctcccccacat
catcatcatctcatctgagggagtatctgagtgaggtgggaagagggatt
tcattgagaaaagaagagcccgcatttggagggtccaaagaagctgatga
gtccatacagcatgcatccttcactgcctggtattggg

gaattcagtgaacaattaaaggctgatattattaccaagaaacttacaaa
aaaaattaatggacattctggctctaaacgtttgttttagttaccctaag
aaatgggctctagcaaagcaggtgacttgattcctgtctgtcagtccacc
tatttctctgcagttatgtattcctgaaatggcagaaacctactataatg
cttaatcttgagtggatttcagtcacctaggaaaaactccatctctggat
atctgtgcaggactcatatgtgcatttgttccaagtggtaaaatccttca
tttggtcacacttggctcaactatgataaggacctgtatgaagtgccctt
gaagttgtacaggacagacagctaccctcgtgctggctattaaaatgcaa
ggtgctctcaaaagaaaccaagggacttagcagtaccttgggccctacct
gttcaacctaaagcccaaggttagtagggttagtaacctgctctgagcgt
aaacaaaaagtgccttcctgaattccaagggtgcagtggggaaacacaaa
gaagttactgatcagggttcagctgggcatgcatttaaatacaacctgac
tcttgtgtcttctacatgcctgaggcaacctgattgctcgctaagggcac
acagaggcaaacagccctttctaagacaaattcccatcagccatccccac
cagactccttgaggcatattaagagctttatagctctagagggaagagcc
ccacttgtagtcacagccttggattaggtacttgaaaaataatcccccag
gcaaagaagggcagtaggaaggctctgctgtgtgagaaagagacaatatc
ttttcaacatctgaaaggaccagggctcctcaagtccttgaagaaggcca
gctgaaaggatgtaaggaggcttgcccgttgctggcccttccactgagag
aaggagctgtgggaaagcatggctctgggactgctagtgaaaagcctccc
atttttccagtgtggtggtgcccacaccagaatatggaactcctttagaa
ctttcttcccttgtcacctctcttgggaggtgtgtggaggaggtccagtg
aggccacacaccagccaattaacagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14489076_14490211
seq2: B6Ng01-294F12.b_45_1182 (reverse)

seq1  CCCAAT-CCAGAGCAGTGAAAGATACCTGCTGTATGGACTCATCA-CTTC  48
      |||||| |||| |||||||| ||| | |||||||||||||||||| ||||
seq2  CCCAATACCAG-GCAGTGAAGGATGCATGCTGTATGGACTCATCAGCTTC  49

seq1  TCTGTGACCCT-CAAATGCTGGCTCTTC-TCTCTCAAATGAAATCCCTC-  95
      | || |||||| ||||||| |||||||| | |||| ||||||||||||| 
seq2  TTTG-GACCCTCCAAATGCGGGCTCTTCTTTTCTC-AATGAAATCCCTCT  97

seq1  TCCCACCTCCACTCAGATACTCCCCTCAGATGAGATGATGATGATGTGGG  145
      |||||||| |||||||||||| ||||||||||||||||||||||||| ||
seq2  TCCCACCT-CACTCAGATACT-CCCTCAGATGAGATGATGATGATGT-GG  144

seq1  GGGAGGTGTGTGT--GGGGAGGTGGGCA-CCACATGAATGTAGGTTTTTT  192
      ||||||||||| |  ||| ||||||||| |||||||||||||||||||||
seq2  GGGAGGTGTGTTTTGGGGAAGGTGGGCACCCACATGAATGTAGGTTTTTT  194

seq1  TGTACAGTCTTTCAAAACCATCTAGACTCACAAGCTTTATTGCTGTTTCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTCTTTCAAAACCATCTAGACTCACAAGCTTTATTGCTGTTTCT  244

seq1  GTCAGTCACCACAGGAGTACCTATTGACTGTGTTAGACACCACTCTGACT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCACCACAGGAGTACCTATTGACTGTGTTAGACACCACTCTGACT  294

seq1  CAGAACAGTGAGAACTAACCCTTCAAAGACCACAGATTAGAGATAGGGCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGTGAGAACTAACCCTTCAAAGACCACAGATTAGAGATAGGGCC  344

seq1  AGACACCACACCAGAGGGGGGCGGGGGTGCAGAAATCTAAGCAAAGGCTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCACACCAGAGGGGGGCGGGGGTGCAGAAATCTAAGCAAAGGCTG  394

seq1  CTTTTCTGGTTTGTTTTGTTTTGTTTATTTTAAACTGTAGGATGCTTACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGTTTGTTTTGTTTTGTTTATTTTAAACTGTAGGATGCTTACA  444

seq1  TGTATGCAGATTTAGGACTTTCCAAAACAGAGCATAATATACTGAGTCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAGATTTAGGACTTTCCAAAACAGAGCATAATATACTGAGTCAG  494

seq1  AAAGACTGTAGAAGGAATGTGGTGATAACTGATGTTACCTGAGTGAGGCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTAGAAGGAATGTGGTGATAACTGATGTTACCTGAGTGAGGCT  544

seq1  CCCACACTGTTTAGACCTAAGTAGAAGCCAAAGAACCCAGCTCACAAGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTGTTTAGACCTAAGTAGAAGCCAAAGAACCCAGCTCACAAGGA  594

seq1  TAGCTTCACAACTTTTAATCCATTTCTTATCATTTATATCCATTCACGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCACAACTTTTAATCCATTTCTTATCATTTATATCCATTCACGAG  644

seq1  TAAAGAACTCCCATAACAAAAAGTGACAGCAGAACCTCTTAAAACTTAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTCCCATAACAAAAAGTGACAGCAGAACCTCTTAAAACTTAAA  694

seq1  CCATCCATTTTTTTTTTAATTTAAGGACCAGCAACAATAATTTCAAATTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATTTTTTTTTTAATTTAAGGACCAGCAACAATAATTTCAAATTA  744

seq1  CAACATCAAGTGTCTGATGAAAGTTCACCGAAGACTACCAGAGCTTCTTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCAAGTGTCTGATGAAAGTTCACCGAAGACTACCAGAGCTTCTTG  794

seq1  TCTTATAGGAAGGTCATTGGTTTTAAATAAAGGGCTAATCCCTGTAGTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGGAAGGTCATTGGTTTTAAATAAAGGGCTAATCCCTGTAGTTC  844

seq1  AGAAATAAATTATTTTTTTTAATATTCTTTAAAATATGTATGGTTACTAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAATTATTTTTTTTAATATTCTTTAAAATATGTATGGTTACTAC  894

seq1  AATAATCCTTTCAATCCTTTTTCTTGCTGTTTCTTAAAACATATAGGGTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCTTTCAATCCTTTTTCTTGCTGTTTCTTAAAACATATAGGGTA  944

seq1  AGTCACAATCCAAATATATTTACTCTGTGGAAACCTAGTTTCCTATGGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAATCCAAATATATTTACTCTGTGGAAACCTAGTTTCCTATGGTT  994

seq1  TAGGGATTAAAGCATATAAAATTTTAAATCAGTTTTTTAATTTGAAGATG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTAAAGCATATAAAATTTTAAATCAGTTTTTTAATTTGAAGATG  1044

seq1  TGGAGAATTGTTTCACTATTGCTCATTTAGGAATGTCATTTATTTAAAAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATTGTTTCACTATTGCTCATTTAGGAATGTCATTTATTTAAAAT  1094

seq1  ATTAGCTGTACTAGATTCAGAAGATAGAATCTCTTTGAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGTACTAGATTCAGAAGATAGAATCTCTTTGAGAATTC  1138


seq1: chr1_14480597_14481707
seq2: B6Ng01-294F12.g_68_1194

seq1  GAATTCAGTGAACAATTAAAGGCTGATATTATTACCAAGAAACTTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAACAATTAAAGGCTGATATTATTACCAAGAAACTTACAAA  50

seq1  AAAAATTAATGGACATTCTGGCTCTAAACGTTTGTTTTAGTTACCCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAATGGACATTCTGGCTCTAAACGTTTGTTTTAGTTACCCTAAG  100

seq1  AAATGGGCTCTAGCAAAGCAGGTGACTTGATTCCTGTCTGTCAGTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCTCTAGCAAAGCAGGTGACTTGATTCCTGTCTGTCAGTCCACC  150

seq1  TATTTCTCTGCAGTTATGTATTCCTGAAATGGCAGAAACCTACTATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTGCAGTTATGTATTCCTGAAATGGCAGAAACCTACTATAATG  200

seq1  CTTAATCTTGAGTGGATTTCAGTCACCTAGGAAAAACTCCATCTCTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTTGAGTGGATTTCAGTCACCTAGGAAAAACTCCATCTCTGGAT  250

seq1  ATCTGTGCAGGACTCATATGTGCATTTGTTCCAAGTGGTAAAATCCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCAGGACTCATATGTGCATTTGTTCCAAGTGGTAAAATCCTTCA  300

seq1  TTTGGTCACACTTGGCTCAACTATGATAAGGACCTGTATGAAGTGCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCACACTTGGCTCAACTATGATAAGGACCTGTATGAAGTGCCCTT  350

seq1  GAAGTTGTACAGGACAGACAGCTACCCTCGTGCTGGCTATTAAAATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTACAGGACAGACAGCTACCCTCGTGCTGGCTATTAAAATGCAA  400

seq1  GGTGCTCTCAAAAGAAACCAAGGGACTTAGCAGTACCTTGGGCCCTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTCAAAAGAAACCAAGGGACTTAGCAGTACCTTGGGCCCTACCT  450

seq1  GTTCAACCTAAAGCCCAAGGTTAGTAGGGTTAGTAACCTGCTCTGAGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACCTAAAGCCCAAGGTTAGTAGGGTTAGTAACCTGCTCTGAGCGT  500

seq1  AAACAAAAAGTGCCTTCCTGAATTCCAAGGGTGCAGTGGGGAAACACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAGTGCCTTCCTGAATTCCAAGGGTGCAGTGGGGAAACACAAA  550

seq1  GAAGTTACTGATCAGGGTTCAGCTGGGCATGCATTTAAATACAACCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACTGATCAGGGTTCAGCTGGGCATGCATTTAAATACAACCTGAC  600

seq1  TCTTGTGTCTTCTACATGCCTGAGGCAACCTGATTGCTCGCTAAGGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTCTTCTACATGCCTGAGGCAACCTGATTGCTCGCTAAGGGCAC  650

seq1  ACAGAGGCAAACAGCCCTTTCTAAGACAAATTCCCATCAGCCATCCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCAAACAGCCCTTTCTAAGACAAATTCCCATCAGCCATCCCCAC  700

seq1  CAGACTCCTTGAGGCATATTAAGAGCTTTATAGCTCTAGAGGGAAGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCTTGAGGCATATTAAGAGCTTTATAGCTCTAGAGGGAAGAGCC  750

seq1  CCACTTGTAGTCACAGCCTTGGATTAGGTACTTGAAAAATAATCCCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGTAGTCACAGCCTTGGATTAGGTACTTGAAAAATAATCCCCCAG  800

seq1  GCAAAGAAGGGCAGTAGGAAGGCTCTGCTGTGTGAGAAAGAGACAATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAGGGCAGTAGGAAGGCTCTGCTGTGTGAGAAAGAGACAATATC  850

seq1  TTTTCAACATCTG-AAGGACCA-GGCTCCTCAAGTCCTTGAAGAAGGCCA  898
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  TTTTCAACATCTGAAAGGACCAGGGCTCCTCAAGTCCTTGAAGAAGGCCA  900

seq1  GCTG-AAGGATGTAAGGA-GCTTGCCCGTTGCTGGCC--TTCACTGAAGA  944
      |||| ||||||||||||| ||||||||||||||||||  | ||||| |||
seq2  GCTGAAAGGATGTAAGGAGGCTTGCCCGTTGCTGGCCCTTCCACTG-AGA  949

seq1  GAAGGAGCTGTGGG-AAGCATGGCTCT-GGACTGCTAGTGAAAAGC--TC  990
      |||||||||||||| |||||||||||| ||||||||||||||||||   |
seq2  GAAGGAGCTGTGGGAAAGCATGGCTCTGGGACTGCTAGTGAAAAGCCTCC  999

seq1  CATTTTTCCAGTGTG--TGTGCCCACA-CAGAATTAATGG-ACTCTTTAA  1036
      |||||||||||||||   ||||||||| ||||||  |||| |||| || |
seq2  CATTTTTCCAGTGTGGTGGTGCCCACACCAGAAT--ATGGAACTCCTTTA  1047

seq1  GAACTTTCTTCCTTTGTCA---CTCTTGGAGTGTTGTG-GAAGGAGGTCC  1082
      |||||||||||| ||||||   ||||||| | | |||| | |||||||||
seq2  GAACTTTCTTCCCTTGTCACCTCTCTTGG-GAGGTGTGTGGAGGAGGTCC  1096

seq1  AGTGAG--CACACAACAGCAAATAAACAGTA  1111
      ||||||  |||||| |||| ||| |||||||
seq2  AGTGAGGCCACACACCAGCCAATTAACAGTA  1127


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