BAC Information

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BAC

Clone NameB6Ng01-294G08
Chromosome1 (Build37)
Map Location 41,514,252 - 41,515,484
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294G08.bB6Ng01-294G08.g
ACCGA090535GA090536
length1,2041,170
definitionB6Ng01-294G08.b B6Ng01-294G08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctttgtactccatttttaatggggttatttgaatt
tctggagtccagcctcttgagttctttgtatatattggatattagtccct
tatcagatttaggattggtaaaaatatttttccactctgttggtggcctt
tttgtcttattgacaatgtctttagccttacagaagctttgcaattttat
gaggtcccatttgtcaattcttgatcttacagcacaagccattgctgttc
tgtttaggaattttccccctgtgtctatatcttcgaggcttttccctact
ttctcctctataaatttcagtgtctctggttttatgtggagttctttgat
cctcttagtcctgagctttgtacaaggagataagaatggatcaattccca
ttcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttcactcccttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctatttcattgat
ctacctgtttgatgttgtaccagtaccatgcatttttttaacatcaaaaa
aaaaatctcccaaacatgattaggaaacagaatttttgccaaaattatca
caaagataccctctaacccacttcctattttagtcttgctccactctgaa
accttttgagttggatagttaagcttggcttacatcatccattggccttt
ctaatccaaagttgtgaggtttcctacattcttctaaattacaacacgac
attcatattatttagagcactaagtggtaggaacaactttgttgcctact
ttttgttgccatgattaaaaaaaatactatgagtataagcaaattctgga
gagaagagtttactgggatcatggttccatgacagtagcaagtcagagca
gaagctggatggtccaccactcagaaactgtttaagaagaggttggagac
ataacttgcatagctggtcctatgtactatttttttcagctaaattcctt
gtccgaagtccaaaaactctcgaatatcaccttgccactggagatcagtg
ttcaaatacttgtgcccaaggaaatattctatactagaaatactacaagg
atcatgcttcctttccatgttgctccttaaggaggtttgggactctggtc
ttca

gaattcaatgaaaatgaatacaaagcatatctaaacactcaaaacacaat
gaaagtagttctaagaggtaagctcatagtgcctacataaagcaaacaag
caaacaaactagagaaatctgtcactagcaacttaatatcacacctgaaa
gcgccagaacaaaaaagaaaatcagtacaccaaaaaaacaatttctccta
atatattttgatcctattattttttccttcccagaagtgaaggtgcagac
caggtaggcctttaatcttgtcctacgtggatctacctctcaactgtaca
aagcctagaatcattttaaaaatggatttttatttgacagacttttccag
aacaagtttgatagtggaaatgtccgtagaatgttaattgatttaggagg
ctgcagctctttgtggacagcaccaatccctacatgagaaagctagctga
catgaaccagtgagcaagccaataaacaacactcttgcatggtttctgct
tcaagttcctgcttgagtttctgcccttactgctcttagtgaaaattaaa
cagatactttatacccctgggcttctgggcttctctcaatcagttttttt
gttgtttgtttgtttgtttgtttgtttgtttttaatcacagtaacagaag
agaagctagcagagttctacattttgctgatctttttcctagaagtatat
tatttcccctcaacattcatatttgataaccatctcaaataaaatttaat
atattattgtgtgaagtatgagcattatcttagttttttttttctcatgc
cataataaatactatgatgaaaagcaactcgggaagaaaagtgtttatac
agtttacacgtatcaatcacagtctttcactgaggaagatcagagaagga
attcaagcagaagtagaagcaggaaccttactagaactctgctcactggc
ttgctctccatggcttgctcaacttgcttttcttcaagacccaggaccca
ggaccacctgctagcatgcactgctcacagagttgggccttccacatcat
catatttaaaacgccttcacccaaataacatagatgatctgatggagaca
ttctagttgagaattcccttcagactttggttatgttggttcaagttgat
gaaaacatccatacacaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41514252_41515484
seq2: B6Ng01-294G08.g_65_1234

seq1  GAATTCAATGAAAATGAATACAAAGCATATCTAAACACTCAAAACACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAAATGAATACAAAGCATATCTAAACACTCAAAACACAAT  50

seq1  GAAAGTAGTTCTAAGAGGTAAGCTCATAGTGCCTACATAAAGCAAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGTTCTAAGAGGTAAGCTCATAGTGCCTACATAAAGCAAACAAG  100

seq1  CAAACAAACTAGAGAAATCTGTCACTAGCAACTTAATATCACACCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACTAGAGAAATCTGTCACTAGCAACTTAATATCACACCTGAAA  150

seq1  GCGCCAGAACAAAAAAGAAAATCAGTACACCAAAAAAACAATTTCTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAGAACAAAAAAGAAAATCAGTACACCAAAAAAACAATTTCTCCTA  200

seq1  ATATATTTTGATCCTATTATTTTTTCCTTCCCAGAAGTGAAGGTGCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTGATCCTATTATTTTTTCCTTCCCAGAAGTGAAGGTGCAGAC  250

seq1  CAGGTAGGCCTTTAATCTTGTCCTACGTGGATCTACCTCTCAACTGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGCCTTTAATCTTGTCCTACGTGGATCTACCTCTCAACTGTACA  300

seq1  AAGCCTAGAATCATTTTAAAAATGGATTTTTATTTGACAGACTTTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGAATCATTTTAAAAATGGATTTTTATTTGACAGACTTTTCCAG  350

seq1  AACAAGTTTGATAGTGGAAATGTCCGTAGAATGTTAATTGATTTAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTTGATAGTGGAAATGTCCGTAGAATGTTAATTGATTTAGGAGG  400

seq1  CTGCAGCTCTTTGTGGACAGCACCAATCCCTACATGAGAAAGCTAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTCTTTGTGGACAGCACCAATCCCTACATGAGAAAGCTAGCTGA  450

seq1  CATGAACCAGTGAGCAAGCCAATAAACAACACTCTTGCATGGTTTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCAGTGAGCAAGCCAATAAACAACACTCTTGCATGGTTTCTGCT  500

seq1  TCAAGTTCCTGCTTGAGTTTCTGCCCTTACTGCTCTTAGTGAAAATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCCTGCTTGAGTTTCTGCCCTTACTGCTCTTAGTGAAAATTAAA  550

seq1  CAGATACTTTATACCCCTGGGCTTCTGGGCTTCTCTCAATCAGTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTTTATACCCCTGGGCTTCTGGGCTTCTCTCAATCAGTTTTTTT  600

seq1  GTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAATCACAGTAACAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAATCACAGTAACAGAAG  650

seq1  AGAAGCTAGCAGAGTTCTACATTTTGCTGATCTTTTTCCTAGAAGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAGCAGAGTTCTACATTTTGCTGATCTTTTTCCTAGAAGTATAT  700

seq1  TATTTCCCCTCAACATTCATATTTGATAACCATCTCAAATAAAATTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCCTCAACATTCATATTTGATAACCATCTCAAATAAAATTTAAT  750

seq1  ATATTATTGTGTGAAGTATGAGCATTATCTTAG-TTTTTTTTTCTCATGC  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATATTATTGTGTGAAGTATGAGCATTATCTTAGTTTTTTTTTTCTCATGC  800

seq1  CATAATAAATACTATGATGAAAAGCAACTCGGGAAGAAAAGTGTTTATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAAATACTATGATGAAAAGCAACTCGGGAAGAAAAGTGTTTATAC  850

seq1  AGTTTACACGTATCAATCACAGTCTTTCACTGAGGAAGATCAGAGAAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACACGTATCAATCACAGTCTTTCACTGAGGAAGATCAGAGAAGGA  900

seq1  ATTCAAGCAGAAGTAGAAGCAGGAACCTTACTAGAACTCTGCTCACTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCAGAAGTAGAAGCAGGAACCTTACTAGAACTCTGCTCACTGGC  950

seq1  TTGCTCTCCATGGCTTGCTCAACTTGCTTTTCTTCAAGACCCAGGACCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCCATGGCTTGCTCAACTTGCTTTTCTTCAAGACCCAGGACCCA  1000

seq1  GGACCACCTGCCTAGCAATGGCACTGCTCACAGGAGGTTGGGCCCTCCCA  1049
      |||||||||| ||||||   |||||||||||||   |||||| ||| |||
seq2  GGACCACCTG-CTAGCA--TGCACTGCTCACAG--AGTTGGG-CCTTCCA  1044

seq1  CATCAATCATTAATTTAAAACGCCCTTTCACCCCAAATAACCATAGGATG  1099
      |||| |||||  ||||||||||||  |||| ||||||||| |||| ||||
seq2  CATC-ATCAT--ATTTAAAACGCC--TTCA-CCCAAATAA-CATA-GATG  1086

seq1  ATCTGATGGAGACAATTCTTAGTTGAGATTTCCTCTTCCCAGA-TTTGTG  1148
      ||||||||||||| |||| ||||||||| |||| |||  |||| ||||  
seq2  ATCTGATGGAGAC-ATTC-TAGTTGAGAATTCC-CTT--CAGACTTTGGT  1131

seq1  TATGTTTGGGTCAAGTTGATGAAAAACAACCA-ACAC-AGAGGTGTAGAC  1196
      |||| |||| ||||||||||| |||||| ||| |||| |||         
seq2  TATG-TTGGTTCAAGTTGATG-AAAACATCCATACACAAGA---------  1170

seq1  ATTTTTTTTAAATATCATTTCATTGTACTACACAAGA  1233
                                           
seq2  -------------------------------------  1170


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