BAC Information

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BAC

Clone NameB6Ng01-295L08
Chromosome1 (Build37)
Map Location 3,636,757 - 3,773,189
singlet/doubletdoublet
Overlap geneXkr4
Upstream geneLOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295L08.bB6Ng01-295L08.g
ACCGA091506GA091507
length1,049913
definitionB6Ng01-295L08.b B6Ng01-295L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,636,757 - 3,637,802)(3,772,277 - 3,773,189)
sequence
gaattccagtggtacattccctctgcttaaaagtagtgctcctctgtagg
catcaacatttcttttcaataagaaaactggtttaaagtggaaaaacgct
gagctgtcactcagattcttgtatgcctcagaattctatgtggggctgct
gccatgttgcactgatgcaggtttcctgtcaactttcctcaaatggatga
aatgttcctatgagagagaaactacatagtactcatatttcaattctcct
taactaataaagtgattctgattcaaaccttaaaaaataacaaattatca
cttggagatatatatgtatatttcttgttgtgttttattaatttttgtct
tttgagacgggatttctcacatagccttggctgatctagaagttactttg
tagattaggctggctttgaactcagatatctacctgcttctgcctctgcc
accggagttctgaaattaaaggtattggccaccactccccagctggtttt
gtacattttaagcaagatgtgccacataagtcaaagtatgcctgatttct
ctagctaatttgaagaagcattgattgataggttttttgttttgttttgt
tttgtctttttttttttttttttttttttttttggttttgggtttttgct
gaagaaatgactacgtagaaaacagcattatatgagtttggggaagggga
gacctgaaagcaaatttagatttaattgagaaacatgttctttttagtag
tgaagagagtagaacagaaaattaatgaacttctctaggtttgacttggc
ttgattgttaatgggcctctgttcttcctaccgacccttgtgtttaccct
gtgccaaaatacacttttccttttcaagtccactctaaccggcttaagtg
aagaatgatttagtgcaagatatttagggagtgattcaagaatcaagcac
agatgttccaaaggctctgaagcaatgcaagctgggacccagagctcatt
actacttgttaagctgcagagtacagcagagaatggacagggttactgc

gaattctgtgggatagagtttttcatgttaattatggagtaccaaagatt
ctgtcctagtggcaccataatgtaaaactgtgcacacaccctaagccagt
ctcctttttcaactttccatatgaactttcttaggattggcaatcagtga
gacatggtgtaaaaagtccaccggcccctctgtgatgtcattgcaattta
gtggaaggcataatcatttcaaaatgaatttttaattagcacacattcac
tgtataaaagaatgagatgtattatgagatacacatatagagtgctttaa
tcctatccatcccaatcctatctctcccactgagtccctatgttttgttt
tttttcctgttaagtgattttatgcatatgtgagaaaacatgatactttt
ctttcagggcctggttgactttggttaacatgaaatcttcgaattccatg
tttatcctgaaaataatatcatctcattctttttaatggatagatcacac
ctatatgtctgtggtttggctggatagtcctatttctagttgtctgaaga
cctgacccactgactggtggctgcaccattagtatagaatggatattttc
ttggcacctttatcagtagttttgttgtttagactcttcatgagacctgt
tctgactggggtaaggtagaatttcaatctatttttgatttgcatttcct
taatgtctgaggatgttgaacatttttcatatgtttgtcatttgtccttt
ttcaataatttgaaaattttagaaaatgtcatactatatacaatgtacat
atttactcctcattatgttctcctatgtccctctaaattttgctgatccc
ctcttctttctcaattagtgtactttctttttcatctgtgtgtgtgtgtg
tgtgtgtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3636757_3637802
seq2: B6Ng01-295L08.b_47_1095

seq1  GAATTCCAGTGGTACATTCCCTCTGCTTAAAAGTAGTGCTCCTCTGTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGTACATTCCCTCTGCTTAAAAGTAGTGCTCCTCTGTAGG  50

seq1  CATCAACATTTCTTTTCAATAAGAAAACTGGTTTAAAGTGGAAAAACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACATTTCTTTTCAATAAGAAAACTGGTTTAAAGTGGAAAAACGCT  100

seq1  GAGCTGTCACTCAGATTCTTGTATGCCTCAGAATTCTATGTGGGGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTCACTCAGATTCTTGTATGCCTCAGAATTCTATGTGGGGCTGCT  150

seq1  GCCATGTTGCACTGATGCAGGTTTCCTGTCAACTTTCCTCAAATGGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTGCACTGATGCAGGTTTCCTGTCAACTTTCCTCAAATGGATGA  200

seq1  AATGTTCCTATGAGAGAGAAACTACATAGTACTCATATTTCAATTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCTATGAGAGAGAAACTACATAGTACTCATATTTCAATTCTCCT  250

seq1  TAACTAATAAAGTGATTCTGATTCAAACCTTAAAAAATAACAAATTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATAAAGTGATTCTGATTCAAACCTTAAAAAATAACAAATTATCA  300

seq1  CTTGGAGATATATATGTATATTTCTTGTTGTGTTTTATTAATTTTTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATATATATGTATATTTCTTGTTGTGTTTTATTAATTTTTGTCT  350

seq1  TTTGAGACGGGATTTCTCACATAGCCTTGGCTGATCTAGAAGTTACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACGGGATTTCTCACATAGCCTTGGCTGATCTAGAAGTTACTTTG  400

seq1  TAGATTAGGCTGGCTTTGAACTCAGATATCTACCTGCTTCTGCCTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGGCTGGCTTTGAACTCAGATATCTACCTGCTTCTGCCTCTGCC  450

seq1  ACCGGAGTTCTGAAATTAAAGGTATTGGCCACCACTCCCCAGCTGGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGAGTTCTGAAATTAAAGGTATTGGCCACCACTCCCCAGCTGGTTTT  500

seq1  GTACATTTTAAGCAAGATGTGCCACATAAGTCAAAGTATGCCTGATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTTAAGCAAGATGTGCCACATAAGTCAAAGTATGCCTGATTTCT  550

seq1  CTAGCTAATTTGAAGAAGCATTGATTGATAGGTTTTTTGTTTTGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAATTTGAAGAAGCATTGATTGATAGGTTTTTTGTTTTGTTTTGT  600

seq1  TTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTGGGTTTTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTGGGTTTTTGCT  650

seq1  GAAGAAATGACTACGTAGAAAACAGCATTATATGAGTTTGGGGAAGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATGACTACGTAGAAAACAGCATTATATGAGTTTGGGGAAGGGGA  700

seq1  GACCTGAAAGCAAATTTAGATTTAATTGAGAAACATGTTCTTTTTTAGTA  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACCTGAAAGCAAATTTAGATTTAATTGAGAAACATGTTC-TTTTTAGTA  749

seq1  GTGAAGAGAGTAGAACAGAAAATTAATGAACTTCTCTAGGTTTGACTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGAGTAGAACAGAAAATTAATGAACTTCTCTAGGTTTGACTTGG  799

seq1  CTTGATTGTTAATGGGCCTCTGTTCTTCCTACCGACCCTTGTGTTTACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGTTAATGGGCCTCTGTTCTTCCTACCGACCCTTGTGTTTACCC  849

seq1  TGTGCCAAAATACACTTTTCCTTTTCAAGTCCACTCTAACCGGCTTAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAAAATACACTTTTCCTTTTCAAGTCCACTCTAACCGGCTTAAGT  899

seq1  G-AGAATGATTTAGTGCAAGATATTTAGGGAGTGATCAAGGAATCAAGCA  949
      | ||||||||||||||||||||||||||||||||||  | ||||||||||
seq2  GAAGAATGATTTAGTGCAAGATATTTAGGGAGTGATTCAAGAATCAAGCA  949

seq1  CAGATGTTCC-AAGGC-CTGAAGCAATGC-AGCT-GGACCCAGAGGCCTC  995
      |||||||||| ||||| |||||||||||| |||| ||||||||||  |||
seq2  CAGATGTTCCAAAGGCTCTGAAGCAATGCAAGCTGGGACCCAGAG--CTC  997

seq1  ATTACTACCTGTTAAGCTGCAGGAGTACAGCAGAG-ATGGACAGGG-TAC  1043
      |||||||| |||||||||||| ||||||||||||| |||||||||| |||
seq2  ATTACTACTTGTTAAGCTGCA-GAGTACAGCAGAGAATGGACAGGGTTAC  1046

seq1  TGC  1046
      |||
seq2  TGC  1049


seq1: chr1_3772277_3773189
seq2: B6Ng01-295L08.g_70_982 (reverse)

seq1  ATACACACACACACACACACACACACAGATGAAAAAGAAAGTACACTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACACAGATGAAAAAGAAAGTACACTAAT  50

seq1  TGAGAAAGAAGAGGGGATCAGCAAAATTTAGAGGGACATAGGAGAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGAAGAGGGGATCAGCAAAATTTAGAGGGACATAGGAGAACATA  100

seq1  ATGAGGAGTAAATATGTACATTGTATATAGTATGACATTTTCTAAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGTAAATATGTACATTGTATATAGTATGACATTTTCTAAAATTT  150

seq1  TCAAATTATTGAAAAAGGACAAATGACAAACATATGAAAAATGTTCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATTGAAAAAGGACAAATGACAAACATATGAAAAATGTTCAACA  200

seq1  TCCTCAGACATTAAGGAAATGCAAATCAAAAATAGATTGAAATTCTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACATTAAGGAAATGCAAATCAAAAATAGATTGAAATTCTACCT  250

seq1  TACCCCAGTCAGAACAGGTCTCATGAAGAGTCTAAACAACAAAACTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGTCAGAACAGGTCTCATGAAGAGTCTAAACAACAAAACTACTG  300

seq1  ATAAAGGTGCCAAGAAAATATCCATTCTATACTAATGGTGCAGCCACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGTGCCAAGAAAATATCCATTCTATACTAATGGTGCAGCCACCAG  350

seq1  TCAGTGGGTCAGGTCTTCAGACAACTAGAAATAGGACTATCCAGCCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGTCAGGTCTTCAGACAACTAGAAATAGGACTATCCAGCCAAAC  400

seq1  CACAGACATATAGGTGTGATCTATCCATTAAAAAGAATGAGATGATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACATATAGGTGTGATCTATCCATTAAAAAGAATGAGATGATATTA  450

seq1  TTTTCAGGATAAACATGGAATTCGAAGATTTCATGTTAACCAAAGTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGATAAACATGGAATTCGAAGATTTCATGTTAACCAAAGTCAAC  500

seq1  CAGGCCCTGAAAGAAAAGTATCATGTTTTCTCACATATGCATAAAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTGAAAGAAAAGTATCATGTTTTCTCACATATGCATAAAATCAC  550

seq1  TTAACAGGAAAAAAAACAAAACATAGGGACTCAGTGGGAGAGATAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGAAAAAAAACAAAACATAGGGACTCAGTGGGAGAGATAGGATT  600

seq1  GGGATGGATAGGATTAAAGCACTCTATATGTGTATCTCATAATACATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGATAGGATTAAAGCACTCTATATGTGTATCTCATAATACATCTC  650

seq1  ATTCTTTTATACAGTGAATGTGTGCTAATTAAAAATTCATTTTGAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTATACAGTGAATGTGTGCTAATTAAAAATTCATTTTGAAATGA  700

seq1  TTATGCCTTCCACTAAATTGCAATGACATCACAGAGGGGCCGGTGGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCTTCCACTAAATTGCAATGACATCACAGAGGGGCCGGTGGACTT  750

seq1  TTTACACCATGTCTCACTGATTGCCAATCCTAAGAAAGTTCATATGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACCATGTCTCACTGATTGCCAATCCTAAGAAAGTTCATATGGAAA  800

seq1  GTTGAAAAAGGAGACTGGCTTAGGGTGTGTGCACAGTTTTACATTATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAAAGGAGACTGGCTTAGGGTGTGTGCACAGTTTTACATTATGGT  850

seq1  GCCACTAGGACAGAATCTTTGGTACTCCATAATTAACATGAAAAACTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAGGACAGAATCTTTGGTACTCCATAATTAACATGAAAAACTCTA  900

seq1  TCCCACAGAATTC  913
      |||||||||||||
seq2  TCCCACAGAATTC  913


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