BAC Information

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BAC

Clone NameB6Ng01-295O01
Chromosome1 (Build37)
Map Location 59,277,593 - 59,416,614
singlet/doubletdoublet
Overlap geneAls2, Als2cr7
Upstream geneAox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4
Downstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295O01.bB6Ng01-295O01.g
ACCGA091636GA091637
length9611,055
definitionB6Ng01-295O01.b B6Ng01-295O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,415,660 - 59,416,614)(59,277,593 - 59,278,634)
sequence
gaattctcaaagaacacatttgttaaaggcaaaagtgttaaaaaacaaaa
atcaagataaaaagaccaggcactcttttcaaggtatcttatcagtgact
gcaataaaggttcttgtggagtttgcctcctagaaggggaaaaacaggaa
cagtcacaaaaagtaaatcacaaatttctgagcatgaaatcgagtgagtc
cctgtgctagggatatggagcaggctcgggggaggggtggggcggttagt
gcacaggaggctccctggtcacacaggtgccgcacaggaagatgccatga
gacgtgactgtgagcaatggcttgatgcaggcaaggacgttgtctgtgag
ggttgtttggagactgagccggacaaagccagggaggtagagcaggttct
tttattttagccccagatgctgccagcttcatcatctctcttgtgcccac
aaaagcagggaacctcccggccctcgctctctcttgctctccctatggct
atttcatctcctcctctgtcctttcaggagagggtttctgaaaaggttga
cttctgttttctggccaactcctttaacccgttctgcttttttacaaatg
gatgcagctctcctgtacgttactagggatcagtggccaacaaatcatgg
ccctttagtagttcagtctgccctatttttaaccgtagacagttggggag
tgcatataagcacagccttttgcagtttttacattttttaactttttaaa
aatttcacatatatgggtattttgctgacatgtatgtctgtgcaccgtgt
gtgtatgcagtgttccgtggaaaccagaaaaggatgttgggatctcctgg
gactggagttacaaacagttgtgagctgacactttcttacttgctaattg
tttttgtcttttttagcctatttatgtttgctctaataaaatacccaaga
catggtatttt
gaattcaatctgcaaatcaacatattcagtacaatcatagagactgtggt
gatcgcaaatgatgtccccatctatgtgaatcctcggtccccaattggga
aggcttaggagatatagccttgttggggcaggctttgaggtttcaagagc
taagtagcattcaatgtactctctaccttctgtttgcagctccagatgtg
agccctcagctcttgctgcgactctgccttccctgtcagccctttttaac
tctaagcccaattaaacatgtccttttataagctgctatagttatggtat
ttcatcacagtgatagaaaagtaatacctatattaaggttactttttaag
tactctggaacatataaaaacttaaattccaactgggaaagatttttttt
ttaaaaatctcagtaatgtatcatatccaagtcattctaattttcagtaa
tgaacacaaatgttaattattcaatttctttgtgtttaactaaaatacat
tttccattactggaacttctgtggtaatttcccccaagacaatctcaatg
caatgctaacaagcttcagacccggaagggctagtagaaatgtggatctg
gaatgagctgtttccaggccccacatttgccatttgttctacacaggctg
agtactggtatggcagaagccattccccctaaccaatcagtagctcagta
gctctgtgacattacttattagttgcgggacgtgctgaccgccgggcacc
tgtgcccacgagctgaacatttcactagcactctgtgccacttctttcca
acacagctgggccatggcgcctggaatgccaatgaagttcccattttagt
ttaataaactaaaactgctgccgatgtagttaaatggtagagcactcaac
acacatgggctctgttggattagttctccagtgtctgtgccttccaaaat
aataaaataaaagcatcccacccaaaccccagggtatagtagcttattga
caatttccagcctctaaggaagcctgaaggcaggaagactgaaaattcaa
tagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59415660_59416614
seq2: B6Ng01-295O01.b_46_1006 (reverse)

seq1  AAAATACCCTGTCTTGGGTATTTTATTAGAGC-AACATAAAATAGGCT-A  48
      |||||||| ||||||||||||||||||||||| ||||| ||||||||| |
seq2  AAAATACCATGTCTTGGGTATTTTATTAGAGCAAACAT-AAATAGGCTAA  49

seq1  AAAAGACAAAAAC-ATTAGCAGGT-AGAAAGTGTCAGCTCACAACTGTTT  96
      ||||||||||||| ||||||| || |||||||||||||||||||||||||
seq2  AAAAGACAAAAACAATTAGCAAGTAAGAAAGTGTCAGCTCACAACTGTTT  99

seq1  GTAACTCCAGTCCCAGGAGAT-CCAACATCCTTTTCTGGTTTCCACGG-A  144
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GTAACTCCAGTCCCAGGAGATCCCAACATCCTTTTCTGGTTTCCACGGAA  149

seq1  CACTGCATACACACACGGTGCACAGACATACATGTCAGCAAAATACCCAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATACACACACGGTGCACAGACATACATGTCAGCAAAATACCCAT  199

seq1  ATATGTGAAATTTTTAAAAAGTTAAAAAATGTAAAAACTGCAAAAGGCTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGAAATTTTTAAAAAGTTAAAAAATGTAAAAACTGCAAAAGGCTG  249

seq1  TGCTTATATGCACTCCCCAACTGTCTACGGTT-AAAATAGGGCAGACTGA  293
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCTTATATGCACTCCCCAACTGTCTACGGTTAAAAATAGGGCAGACTGA  299

seq1  ACTACTAAAGGGCCATGATTTGTTGGCCACTGATCCCTAGTAACGTACAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAAAGGGCCATGATTTGTTGGCCACTGATCCCTAGTAACGTACAG  349

seq1  GAGAGCTGCATCCATTTGTAAAAAAGCAGAACGGGTTAAAGGAGTTGGCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGCATCCATTTGTAAAAAAGCAGAACGGGTTAAAGGAGTTGGCC  399

seq1  AGAAAACAGAAGTCAACCTTTTCAGAAACCCTCTCCTGAAAGGACAGAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGAAGTCAACCTTTTCAGAAACCCTCTCCTGAAAGGACAGAGG  449

seq1  AGGAGATGAAATAGCCATAGGGAGAGCAAGAGAGAGCGAGGGCCGGGAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGAAATAGCCATAGGGAGAGCAAGAGAGAGCGAGGGCCGGGAGG  499

seq1  TTCCCTGCTTTTGTGGGCACAAGAGAGATGATGAAGCTGGCAGCATCTGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCTTTTGTGGGCACAAGAGAGATGATGAAGCTGGCAGCATCTGG  549

seq1  GGCTAAAATAAAAGAACCTGCTCTACCTCCCTGGCTTTGTCCGGCTCAGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAATAAAAGAACCTGCTCTACCTCCCTGGCTTTGTCCGGCTCAGT  599

seq1  CTCCAAACAACCCTCACAGACAACGTCCTTGCCTGCATCAAGCCATTGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAACAACCCTCACAGACAACGTCCTTGCCTGCATCAAGCCATTGCT  649

seq1  CACAGTCACGTCTCATGGCATCTTCCTGTGCGGCACCTGTGTGACCAGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCACGTCTCATGGCATCTTCCTGTGCGGCACCTGTGTGACCAGGG  699

seq1  AGCCTCCTGTGCACTAACCGCCCCACCCCTCCCCCGAGCCTGCTCCATAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTGTGCACTAACCGCCCCACCCCTCCCCCGAGCCTGCTCCATAT  749

seq1  CCCTAGCACAGGGACTCACTCGATTTCATGCTCAGAAATTTGTGATTTAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCACAGGGACTCACTCGATTTCATGCTCAGAAATTTGTGATTTAC  799

seq1  TTTTTGTGACTGTTCCTGTTTTTCCCCTTCTAGGAGGCAAACTCCACAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGACTGTTCCTGTTTTTCCCCTTCTAGGAGGCAAACTCCACAAG  849

seq1  AACCTTTATTGCAGTCACTGATAAGATACCTTGAAAAGAGTGCCTGGTCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTATTGCAGTCACTGATAAGATACCTTGAAAAGAGTGCCTGGTCT  899

seq1  TTTTATCTTGATTTTTGTTTTTTAACACTTTTGCCTTTAACAAATGTGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTGATTTTTGTTTTTTAACACTTTTGCCTTTAACAAATGTGTT  949

seq1  CTTTGAGAATTC  955
      ||||||||||||
seq2  CTTTGAGAATTC  961

seq1: chr1_59277593_59278634
seq2: B6Ng01-295O01.g_69_1123

seq1  GAATTCAATCTGCAAATCAACATATTCAGTACAATCATAGAGACTGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTGCAAATCAACATATTCAGTACAATCATAGAGACTGTGGT  50

seq1  GATCGCAAATGATGTCCCCATCTATGTGAATCCTCGGTCCCCAATTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGCAAATGATGTCCCCATCTATGTGAATCCTCGGTCCCCAATTGGGA  100

seq1  AGGCTTAGGAGATATAGCCTTGTTGGGGCAGGCTTTGAGGTTTCAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGGAGATATAGCCTTGTTGGGGCAGGCTTTGAGGTTTCAAGAGC  150

seq1  TAAGTAGCATTCAATGTACTCTCTACCTTCTGTTTGCAGCTCCAGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGCATTCAATGTACTCTCTACCTTCTGTTTGCAGCTCCAGATGTG  200

seq1  AGCCCTCAGCTCTTGCTGCGACTCTGCCTTCCCTGTCAGCCCTTTTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCAGCTCTTGCTGCGACTCTGCCTTCCCTGTCAGCCCTTTTTAAC  250

seq1  TCTAAGCCCAATTAAACATGTCCTTTTATAAGCTGCTATAGTTATGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCCCAATTAAACATGTCCTTTTATAAGCTGCTATAGTTATGGTAT  300

seq1  TTCATCACAGTGATAGAAAAGTAATACCTATATTAAGGTTACTTTTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACAGTGATAGAAAAGTAATACCTATATTAAGGTTACTTTTTAAG  350

seq1  TACTCTGGAACATATAAAAACTTAAATTCCAACTGGGAAAGATTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGGAACATATAAAAACTTAAATTCCAACTGGGAAAGATTTTTTTT  400

seq1  TTAAAAATCTCAGTAATGTATCATATCCAAGTCATTCTAATTTTCAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCTCAGTAATGTATCATATCCAAGTCATTCTAATTTTCAGTAA  450

seq1  TGAACACAAATGTTAATTATTCAATTTCTTTGTGTTTAACTAAAATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAAATGTTAATTATTCAATTTCTTTGTGTTTAACTAAAATACAT  500

seq1  TTTCCATTACTGGAACTTCTGTGGTAATTTCCCCCAAGACAATCTCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTACTGGAACTTCTGTGGTAATTTCCCCCAAGACAATCTCAATG  550

seq1  CAATGCTAACAAGCTTCAGACCCGGAAGGGCTAGTAGAAATGTGGATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTAACAAGCTTCAGACCCGGAAGGGCTAGTAGAAATGTGGATCTG  600

seq1  GAATGAGCTGTTTCCAGGCCCCACATTTGCCATTTGTTCTACACAGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGCTGTTTCCAGGCCCCACATTTGCCATTTGTTCTACACAGGCTG  650

seq1  AGTACTGGTATGGCAGAAGCCATTCCCCCTAACCAATCAGTAGCTCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGTATGGCAGAAGCCATTCCCCCTAACCAATCAGTAGCTCAGTA  700

seq1  GCTCTGTGACATTACTTATTAGTTGCGGGACGTGCTGACCGCCGGGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGACATTACTTATTAGTTGCGGGACGTGCTGACCGCCGGGCACC  750

seq1  TGTGCCCACGAGCTGAACA-TTCACTAGCACTCTGTGCCACTTCTTTCCA  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTGCCCACGAGCTGAACATTTCACTAGCACTCTGTGCCACTTCTTTCCA  800

seq1  ACACAGCT-GGCCATGGCGCCTGGAATGCCAATGAAGTTCCCATTTTAGT  848
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGGGCCATGGCGCCTGGAATGCCAATGAAGTTCCCATTTTAGT  850

seq1  TTAATAAACTAAAACTGCTGCCGATGTAGTTAAATGGTAGAGCACTCAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAACTAAAACTGCTGCCGATGTAGTTAAATGGTAGAGCACTCAAC  900

seq1  ACACATGGGCTCTGTTGGATTAGTTCTCCAGTGTCTGTGCCT--CCAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||  | ||||
seq2  ACACATGGGCTCTGTTGGATTAGTTCTCCAGTGTCTGTGCCTTCCAAAAT  950

seq1  AATAAAATAAAAGCAT-CCACCCAAAACCCA-GGTATAGTAGCTTA-TGA  993
      |||||||||||||||| ||||||||| |||| |||||||||||||| |||
seq2  AATAAAATAAAAGCATCCCACCCAAACCCCAGGGTATAGTAGCTTATTGA  1000

seq1  CAA-TTCCAG-CTCTAAGGAAG-CTG-AGGCAGG-AGACTGAAAATTCAA  1038
      ||| |||||| ||||||||||| ||| ||||||| |||||||||||||||
seq2  CAATTTCCAGCCTCTAAGGAAGCCTGAAGGCAGGAAGACTGAAAATTCAA  1050

seq1  -AGCC  1042
       ||||
seq2  TAGCC  1055