BAC Information

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BAC

Clone NameB6Ng01-295P06
Chromosome1 (Build37)
Map Location 93,899,170 - 93,958,568
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295P06.bB6Ng01-295P06.g
ACCGA091690GA091691
length312693
definitionB6Ng01-295P06.b B6Ng01-295P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,958,257 - 93,958,568)(93,899,170 - 93,899,861)
sequence
acgacacttactcattaaagtttaattcctattaatgggcagatgcaagc
tttattatagaactttggtatttctcaataacctgtgtggcaagaaaaag
cagaacttaatggattggggcactcaaggctattagtgaaattcacacag
ggaggagctggctttattgaaagctgagcctagtgttagctgggcgtgca
gtactgccttgcctggaaggggctgtggagtaaagggatgtgggggctgg
gagcactcagcctcagcgtaggagagtagtagggtgtaggtctgtgtgtg
ggttggggacgg
gaattctctacacaaccaccctggggaataaggttctactgggtagcagg
gtagccagtgtgtaacacacactagtgtagggctttcctagtatccatgt
gcatttctgtccccttctgtctggtgccacatactctggtgggcagatat
tatcattctactcaggtggaagttgtgtatctaagggctttcttatgata
tggtgactgttgctgaaaggtatattaaactgtaaggtcgtagaaacaga
ctacataaagatgcccctactcaccctgcataatctgtgattttctgcca
gatacctcagtactgtgcctatgtatccttgtactgaagactatggtaag
gacttcctgctataatacagtattcaaataccatcttggatgatcccaaa
tacttcatgtagcacaaaggaccaacagaatgatcctaccacacaagcaa
cctcaagatattttgctaatatattttccaaaatgtctctgcacattgac
aaaggctccttccactaggcatcagcaatagattccgcttttcagcactc
agggttaacttcctgaatgcagacactccactggtaccctaaggagctgg
ggacagctgtgggacctactgtactaccttgccttggttcttcccaggag
ttgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93958257_93958568
seq2: B6Ng01-295P06.b_53_364 (reverse)

seq1  CCGTCCCCAACCCACACACAGACCTACACCCTACTACTCTCCTACGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCCCAACCCACACACAGACCTACACCCTACTACTCTCCTACGCTGA  50

seq1  GGCTGAGTGCTCCCAGCCCCCACATCCCTTTACTCCACAGCCCCTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTGCTCCCAGCCCCCACATCCCTTTACTCCACAGCCCCTTCCAG  100

seq1  GCAAGGCAGTACTGCACGCCCAGCTAACACTAGGCTCAGCTTTCAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAGTACTGCACGCCCAGCTAACACTAGGCTCAGCTTTCAATAAA  150

seq1  GCCAGCTCCTCCCTGTGTGAATTTCACTAATAGCCTTGAGTGCCCCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTCCTCCCTGTGTGAATTTCACTAATAGCCTTGAGTGCCCCAATC  200

seq1  CATTAAGTTCTGCTTTTTCTTGCCACACAGGTTATTGAGAAATACCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTTCTGCTTTTTCTTGCCACACAGGTTATTGAGAAATACCAAAG  250

seq1  TTCTATAATAAAGCTTGCATCTGCCCATTAATAGGAATTAAACTTTAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAATAAAGCTTGCATCTGCCCATTAATAGGAATTAAACTTTAATG  300

seq1  AGTAAGTGTCGT  312
      ||||||||||||
seq2  AGTAAGTGTCGT  312

seq1: chr1_93899170_93899861
seq2: B6Ng01-295P06.g_69_761

seq1  GAATTCTCTACACAACCACCCTGGGGAATAAGGTTCTACTGGGTAGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACACAACCACCCTGGGGAATAAGGTTCTACTGGGTAGCAGG  50

seq1  GTAGCCAGTGTGTAACACACACTAGTGTAGGGCTTTCCTAGTATCCA-GT  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAGCCAGTGTGTAACACACACTAGTGTAGGGCTTTCCTAGTATCCATGT  100

seq1  GCATTTCTGTCCCCTTCTGTCTGGTGCCACATACTCTGGTGGGCAGATAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTGTCCCCTTCTGTCTGGTGCCACATACTCTGGTGGGCAGATAT  150

seq1  TATCATTCTACTCAGGTGGAAGTTGTGTATCTAAGGGCTTTCTTATGATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCTACTCAGGTGGAAGTTGTGTATCTAAGGGCTTTCTTATGATA  200

seq1  TGGTGACTGTTGCTGAAAGGTATATTAAACTGTAAGGTCGTAGAAACAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTGTTGCTGAAAGGTATATTAAACTGTAAGGTCGTAGAAACAGA  250

seq1  CTACATAAAGATGCCCCTACTCACCCTGCATAATCTGTGATTTTCTGCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAAAGATGCCCCTACTCACCCTGCATAATCTGTGATTTTCTGCCA  300

seq1  GATACCTCAGTACTGTGCCTATGTATCCTTGTACTGAAGACTATGGTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTCAGTACTGTGCCTATGTATCCTTGTACTGAAGACTATGGTAAG  350

seq1  GACTTCCTGCTATAATACAGTATTCAAATACCATCTTGGATGATCCCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTGCTATAATACAGTATTCAAATACCATCTTGGATGATCCCAAA  400

seq1  TACTTCATGTAGCACAAAGGACCAACAGAATGATCCTACCACACAAGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCATGTAGCACAAAGGACCAACAGAATGATCCTACCACACAAGCAA  450

seq1  CCTCAAGATATTTTGCTAATATATTTTCCAAAATGTCTCTGCACATTGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGATATTTTGCTAATATATTTTCCAAAATGTCTCTGCACATTGAC  500

seq1  AAAGGCTCCTTCCACTAGGCATCAGCAATAGATTCCGCTTTTCAGCACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCCTTCCACTAGGCATCAGCAATAGATTCCGCTTTTCAGCACTC  550

seq1  AGGGTTAACTTCCTGAATGCAGACACTCCACTGGTACCCTAAGGAGCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAACTTCCTGAATGCAGACACTCCACTGGTACCCTAAGGAGCTGG  600

seq1  GGACAGCTGTGGGACCTACTGTACTACCTTGCCTTGGTTCTTCCCAGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTGTGGGACCTACTGTACTACCTTGCCTTGGTTCTTCCCAGGAG  650

seq1  TTGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGA  692
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGA  693