BAC Information

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BAC

Clone NameB6Ng01-295P13
Chromosome1 (Build37)
Map Location 99,679,795 - 99,680,831
singlet/doubletsinglet
Overlap geneZh2c2
Upstream geneSlco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1
Downstream genePam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295P13.bB6Ng01-295P13.g
ACCGA091702GA091703
length1,2001,039
definitionB6Ng01-295P13.b B6Ng01-295P13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacgaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatcttttccatct
tctgagatcttctttaatttctttcttcagagacttgaagtttttatcat
acagatctttcacttccttagagtcacaccgagatattttatattatttg
tgactattgagaaagggtgttgtttccctaatttctttctcagcctgttt
attctttgtgtagaagaaaggccattgacttgttgaagtaattttatatt
ccagctactcaacgagcctgttttatcagttaaggagtctctgggtgaat
ttttaggttcactattaataatccattcatatcaatcttgcaagtgatac
tttggacctccttccttttcaatttggtaatcacccccctgtgagatact

gaattcattgaacaggtaggaaaagtactcacattcgggagcatgtatca
ctctttcagtgtctggcacaccgtgctttgtgttttagagggtgtttaat
acactgaaataaatttctgtaaatatggaggtagataatgtatactacta
gattttgttgtaaacctatcttttgatctctttaaactaaaatgagatga
ttggatcaaataatacttttttacttgaagcttaagaacaactaaaaata
aaaatataataaaatgatgttaacgagtgctataattgaacatatttata
tcatgttaaaatattaagaataattttatatgtgcatattatatatttac
ataggtagctgtgataatatgtatactaactaaatatgtatatgtatata
tacatactaatatgtagacaaacgaaaagtcttcactaatgttgcacatt
aacatagcacactaagtcattcattaggcacatatggtatgtgaagcaca
gtaggggaaaagtggaaaacagctagtagaagtagattcctcagtccttc
tttcatttcaaccattaagtgaatttatgaatacaaaatctaaatttcac
caagctacccatagtggtcacgtaactcaagagtcttacagcctcccacc
taagagttggtgaggagtcatactcaggtgcaagcaataaagaattcctc
ttcctttcccaagatcacaattgaaatagaagttttgtactcacataaaa
gagaaggttagcgtgaaagttgagcatcagtgggacccaggctccacact
actcttctatctttggagtggaattgtcagtcttgtgctaacagtagagc
caccagagcccaggtcataatatttatattacagttaacaagagaggaca
gggaacaaaaaagctagtgcttgccgagtttgtacagcaattttaattta
atttttttctactatagctttcatgtgaccatgtctacccctctgagggt
ctggggaaagtgtgtttgggttgggaggagatagataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99679795_99680831
seq2: B6Ng01-295P13.g_67_1105

seq1  GAATTCATTGAACAGGTAGGAAAAGTACTCACATTCGGGAGCATGTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAACAGGTAGGAAAAGTACTCACATTCGGGAGCATGTATCA  50

seq1  CTCTTTCAGTGTCTGGCACACCGTGCTTTGTGTTTTAGAGGGTGTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAGTGTCTGGCACACCGTGCTTTGTGTTTTAGAGGGTGTTTAAT  100

seq1  ACACTGAAATAAATTTCTGTAAATATGGAGGTAGATAATGTATACTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAATAAATTTCTGTAAATATGGAGGTAGATAATGTATACTACTA  150

seq1  GATTTTGTTGTAAACCTATCTTTTGATCTCTTTAAACTAAAATGAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTTGTAAACCTATCTTTTGATCTCTTTAAACTAAAATGAGATGA  200

seq1  TTGGATCAAATAATACTTTTTTACTTGAAGCTTAAGAACAACTAAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCAAATAATACTTTTTTACTTGAAGCTTAAGAACAACTAAAAATA  250

seq1  AAAATATAATAAAATGATGTTAACGAGTGCTATAATTGAACATATTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATAAAATGATGTTAACGAGTGCTATAATTGAACATATTTATA  300

seq1  TCATGTTAAAATATTAAGAATAATTTTATATGTGCATATTATATATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAAAATATTAAGAATAATTTTATATGTGCATATTATATATTTAC  350

seq1  ATAGGTAGCTGTGATAATATGTATACTAACTAAATATGTATATGTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAGCTGTGATAATATGTATACTAACTAAATATGTATATGTATATA  400

seq1  TACATACTAATATGTAGACAAACGAAAAGTCTTCACTAATGTTGCACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACTAATATGTAGACAAACGAAAAGTCTTCACTAATGTTGCACATT  450

seq1  AACATAGCACACTAAGTCATTCATTAGGCACATATGGTATGTGAAGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGCACACTAAGTCATTCATTAGGCACATATGGTATGTGAAGCACA  500

seq1  GTAGGGGAAAAGTGGAAAACAGCTAGTAGAAGTAGATTCCTCAGTCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGAAAAGTGGAAAACAGCTAGTAGAAGTAGATTCCTCAGTCCTTC  550

seq1  TTTCATTTCAACCATTAAGTGAATTTATGAATACAAAATCTAAATTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCAACCATTAAGTGAATTTATGAATACAAAATCTAAATTTCAC  600

seq1  CAAGCTACCCATAGTGGTCACGTAACTCAAGAGTCTTACAGCCTCCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTACCCATAGTGGTCACGTAACTCAAGAGTCTTACAGCCTCCCACC  650

seq1  TAAGAGTTGGTGAGGAGTCATACTCAGGTGCAAGCAATAAAGAATTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTGGTGAGGAGTCATACTCAGGTGCAAGCAATAAAGAATTCCTC  700

seq1  TTCCTTTCCCAAGATCACAATTGAAATAGAAGTTTTGTACTCACATAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCCCAAGATCACAATTGAAATAGAAGTTTTGTACTCACATAAAA  750

seq1  GAGAAGGTTAGCGTGAAAGTTGAGCATCAGTGGGACCCAGGCTCCACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTTAGCGTGAAAGTTGAGCATCAGTGGGACCCAGGCTCCACACT  800

seq1  ACTCTTCTATCTTTGGAGTGGAATTGTCAGTCTTGTGCTAACAGTAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTATCTTTGGAGTGGAATTGTCAGTCTTGTGCTAACAGTAGAGC  850

seq1  CACCAGAGCCCAGGTCATAATATTTATATTACAGTTAACAAGAGAGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGCCCAGGTCATAATATTTATATTACAGTTAACAAGAGAGGACA  900

seq1  GGGAACAAAAAAGCTAGTGCTTGCCGAGTTTGTACAGCAATTTTAATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGAACAAAAAAGCTAGTGCTTGCCGAGTTTGTACAGCAATTTTAATTT-  949

seq1  AATTTTTTTCTACTATAGCTTTCATGTGACCATGTCTA-CCCTCTGAGGG  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTTTTTTCTACTATAGCTTTCATGTGACCATGTCTACCCCTCTGAGGG  999

seq1  TCTTGGGGAAAGTGTGTTT-GGTTGG--AGAGATAGATAGA  1037
      || |||||||||||||||| ||||||   ||||||||||||
seq2  TC-TGGGGAAAGTGTGTTTGGGTTGGGAGGAGATAGATAGA  1039