BAC Information

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BAC

Clone NameB6Ng01-296C16
Chromosome1 (Build37)
Map Location 34,819,507 - 34,970,120
singlet/doubletdoublet
Overlap geneArhgef4, BC043098, Plekhb2
Upstream geneZfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
Downstream geneLOC666261, LOC100041544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296C16.bB6Ng01-296C16.g
ACCGA091843GA091844
length1,1141,131
definitionB6Ng01-296C16.b B6Ng01-296C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,819,507 - 34,820,612)(34,968,988 - 34,970,120)
sequence
gaattccagttctcatgcttgttccccaagcagtttacccatggagccgt
cttcccagccccagtttggccgacctctttctcacctttgttgttttctg
tctccctccttctttgggttcatttgctagtcttccagtttctcagcatg
tgagtgtagatagctgattcacaaccttccatctcatgttaaaatgctgg
gggtggtgcacgtgcctgtgatccttgtgctgcaaaagtggagagtgacg
tgggaaagtctggcttctctggaaagtcagttgtgtcaaattaaggtttg
ctggtgcacacaagtaaaaggatattttgctaaagagagatgtgtgagaa
ggatgctttgctgaagcagacacaggtaaaaggatgttttgctatagcag
acacatgaaaggatgagtgacgtttagaatgaatataaatatgaccccag
agacagtggcagatggagcatcagttggattggtgtcgatttgccttact
ctgtgtcactagtctttgctgatgacacgcatgtattcgctcaccttaca
ctgagtggctgagctccacttgtgacttcgtagagactcaccaaagaact
tctcctgaggttcctgcggcttcttgccgcttctgtagactcgagctggt
gcggtttcttctggattggattacccttgctgattcatgtgtgtagtgtc
tgctgagtatactggactgcagctgctgattcatgtttggtgtttgctac
tggactgggctgagaacagtgaagattggagtcacccaaaaaaactgttt
ctaaacaggtctactttccccctctcctaataccctttcttttctactac
ctctggtaggtggtgggctagaggggagggtgaaatgttattaaagtagg
ttgagaaaaacatagacttttcttagcactgtggtaaacagaataaccca
acattcaaggctggggagacatagcttggcatttataatgctatctgcgg
ctacaagcaaccaagcaaccagagtggtgtctcatgcaccgacatggcct
cactttacaactctgataacttcagcttcaggatctgggccttcttgtaa
gccattgggtggga
gaattcttcactcacgggacaggaacatgatattgcccctccagtcatga
gactcctggaaagagccattctaagagaggtttttccacagagggtgcac
gaagcttagatgtcccagaacactcaagtcccaatgtccaaaggacaccc
aagacaccaggacagacaaccaagaggaagacatgcatgactatgcatga
acccctgggggctcatagagagattcatagtactgggcagcatcaagctc
aattccattccctcagtttgggtcagaaggaagaggaaagtggcctcact
caggttcacatgcacctgattaatcttaaactagcattaaagaggcaggc
acgcctgtggggattaggccttatgtgcagctctgcccagccctcttgcg
ggggtatccaaatcttttcacatcatggcacaacattggcaaagttcaca
cttgagtaccttgccatcatgttaccaaagaaaagaagcagaagcagaag
cagaagcagaagcagcagaagcagaagcagaagaagaagaagcagaagaa
gaagcagaagaagcagaagaagcagaagaagaagcagaagaagaagcaga
agaaggagcagaagaagaagcagaagaagaaacagaagcagaagcagcag
aagcagcagaagcagcagcagcagcagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagagaagaagaagccagg
cagtgatggtgcacacctttaatcccagcacttggggggtagaggcagtc
agatctctgttagttcaaggccaacctggtctacagagtgagttccagga
cagccaggattacacagagaaactctgtatcaaaaacaaaacaaacaaac
aaaaatgtcatatagaaaaactcaaaatgctttcagtaagcttactgggg
ttgtatggatcactttccgggatgcaagggctcgtgagcattgggttaga
acagcctgcaggttttttgtttatcttgttagggaattggagcaggttaa
tcgtgttcctggatcaggcagtcatactcagtggggggcagtcaggaaga
acaatcacgcagcagtcaggtggtccctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_34819507_34820612
seq2: B6Ng01-296C16.b_47_1160

seq1  GAATTCCAGTTCTCATGCTTGTTCCCCAAGCAGTTTACCCATGGAGCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCTCATGCTTGTTCCCCAAGCAGTTTACCCATGGAGCCGT  50

seq1  CTTCCCAGCCCCAGTTTGGCCGACCTCTTTCTCACCTTTGTTGTTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGCCCCAGTTTGGCCGACCTCTTTCTCACCTTTGTTGTTTTCTG  100

seq1  TCTCCCTCCTTCTTTGGGTTCATTTGCTAGTCTTCCAGTTTCTCAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCTTCTTTGGGTTCATTTGCTAGTCTTCCAGTTTCTCAGCATG  150

seq1  TGAGTGTAGATAGCTGATTCACAACCTTCCATCTCATGTTAAAATGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTAGATAGCTGATTCACAACCTTCCATCTCATGTTAAAATGCTGG  200

seq1  GGGTGGTGCACGTGCCTGTGATCCTTGTGCTGCAAAAGTGGAGAGTGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGCACGTGCCTGTGATCCTTGTGCTGCAAAAGTGGAGAGTGACG  250

seq1  TGGGAAAGTCTGGCTTCTCTGGAAAGTCAGTTGTGTCAAATTAAGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTCTGGCTTCTCTGGAAAGTCAGTTGTGTCAAATTAAGGTTTG  300

seq1  CTGGTGCACACAAGTAAAAGGATATTTTGCTAAAGAGAGATGTGTGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCACACAAGTAAAAGGATATTTTGCTAAAGAGAGATGTGTGAGAA  350

seq1  GGATGCTTTGCTGAAGCAGACACAGGTAAAAGGATGTTTTGCTATAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTTGCTGAAGCAGACACAGGTAAAAGGATGTTTTGCTATAGCAG  400

seq1  ACACATGAAAGGATGAGTGACGTTTAGAATGAATATAAATATGACCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAAAGGATGAGTGACGTTTAGAATGAATATAAATATGACCCCAG  450

seq1  AGACAGTGGCAGATGGAGCATCAGTTGGATTGGTGTCGATTTGCCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGGCAGATGGAGCATCAGTTGGATTGGTGTCGATTTGCCTTACT  500

seq1  CTGTGTCACTAGTCTTTGCTGATGACACGCATGTATTCGCTCACCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCACTAGTCTTTGCTGATGACACGCATGTATTCGCTCACCTTACA  550

seq1  CTGAGTGGCTGAGCTCCACTTGTGACTTCGTAGAGACTCACCAAAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGCTGAGCTCCACTTGTGACTTCGTAGAGACTCACCAAAGAACT  600

seq1  TCTCCTGAGGTTCCTGCGGCTTCTTGCCGCTTCTGTAGACTCGAGCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGGTTCCTGCGGCTTCTTGCCGCTTCTGTAGACTCGAGCTGGT  650

seq1  GCGGTTTCTTCTGGATTGGATTACCCTTGCTGATTCATGTGTGTAGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTTCTTCTGGATTGGATTACCCTTGCTGATTCATGTGTGTAGTGTC  700

seq1  TGCTGAGTATACTGGACTGCAGCTGCTGATTCATGTTTGGTGTTTGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTATACTGGACTGCAGCTGCTGATTCATGTTTGGTGTTTGCTAC  750

seq1  TGGACTGGGCTGAGAACAGTGAAGATTGGAGTCACCCAAAAAAACTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGGCTGAGAACAGTGAAGATTGGAGTCACCCAAAAAAACTGTTT  800

seq1  CTAAACAGGTCTACTTTCCCCCTCTCCTAATACCCTTTCTTTTCTACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGGTCTACTTTCCCCCTCTCCTAATACCCTTTCTTTTCTACTAC  850

seq1  CTCTGGTAGGTGGTGGGCTAGAGGGGAGGGTGAAATGTTATTAAAGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAGGTGGTGGGCTAGAGGGGAGGGTGAAATGTTATTAAAGTAGG  900

seq1  TTGAGAAAAACATAGACTTT--CTAGCACTGTGGTAAACAGAATAACCCA  948
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  TTGAGAAAAACATAGACTTTTCTTAGCACTGTGGTAAACAGAATAACCCA  950

seq1  ACATTCAAGGCT-GGGAGACATAGCTTGGCATTTATAAATGCTATCTGCG  997
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  ACATTCAAGGCTGGGGAGACATAGCTTGGCATTTAT-AATGCTATCTGCG  999

seq1  GCTACAAGCAACCAAGCAACCAGAGTGTGGTTCTCA-GCACCGACATGG-  1045
      ||||||||||||||||||||||||||| |  ||||| |||||||||||| 
seq2  GCTACAAGCAACCAAGCAACCAGAGTG-GTGTCTCATGCACCGACATGGC  1048

seq1  CTCACTTTACAACCTCTGATAACTTCAGCTTCA-GATCT-GGCCT--CTG  1091
      |||||||||||| |||||||||||||||||||| ||||| |||||   ||
seq2  CTCACTTTACAA-CTCTGATAACTTCAGCTTCAGGATCTGGGCCTTCTTG  1097

seq1  TAAG-CATT-GGTGGGA  1106
      |||| |||| |||||||
seq2  TAAGCCATTGGGTGGGA  1114

seq1: chr1_34968988_34970120
seq2: B6Ng01-296C16.g_68_1198 (reverse)

seq1  TAGAGGG-CCACCTGACTGCTGCGTGAATTGTC-TCTTGACTGCCCCCAC  48
      ||||||| ||||||||||||||||||| |  || || |||||||||||  
seq2  TAGAGGGACCACCTGACTGCTGCGTGATTGTTCTTCCTGACTGCCCCCCA  50

seq1  CTGGAGTATGACTGCCTTGATCCCAGGAACACGGATTTACCTGCT-CAAT  97
      || ||||||||||||| |||| |||||||||| |||| ||||||| ||||
seq2  CT-GAGTATGACTGCC-TGAT-CCAGGAACAC-GATTAACCTGCTCCAAT  96

seq1  TCCCTAAC-AGAT-AACAAAAACCTTGCAGGCTTGTCTAACCCAAATGCT  145
      |||||||| |||| |||||||| | ||||||||  |||||||| ||||||
seq2  TCCCTAACAAGATAAACAAAAAACCTGCAGGCTGTTCTAACCC-AATGCT  145

seq1  CACGAGCCCTTGCATCCCGGAAAGTGATCCAATACAA-CCCAGTAAGCTT  194
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  CACGAGCCCTTGCATCCCGGAAAGTGATCC-ATACAACCCCAGTAAGCTT  194

seq1  ACTGAAAGCATTTTGAGTTTTTCTATATGACATTTTTGTTTGTTTGTTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGCATTTTGAGTTTTTCTATATGACATTTTTGTTTGTTTGTTTT  244

seq1  GTTTTTGATACAGAGTTTCTCTGTGTAATCCTGGCTGTCCTGGAACTCAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGATACAGAGTTTCTCTGTGTAATCCTGGCTGTCCTGGAACTCAC  294

seq1  TCTGTAGACCAGGTTGGCCTTGAACTAACAGAGATCTGACTGCCTCTACC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGGTTGGCCTTGAACTAACAGAGATCTGACTGCCTCTACC  344

seq1  CCCCAAGTGCTGGGATTAAAGGTGTGCACCATCACTGCCTGGCTTTCTTC  394
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCCAAGTGCTGGGATTAAAGGTGTGCACCATCACTGCCTGGC-TTCTTC  393

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  444
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  442

seq1  CTTCTTCTTCTTCTGCTGCTGCTGCTGCTTCTGCTGCTTCTGCTGCTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTGCTGCTGCTGCTGCTTCTGCTGCTTCTGCTGCTTCT  492

seq1  GCTTCTGTTTCTTCTTCTGCTTCTTCTTCTGCTCCTTCTTCTGCTTCTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTCTTCTTCTGCTTCTTCTTCTGCTCCTTCTTCTGCTTCTTC  542

seq1  TTCTGCTTCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTTCTGCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCTTCTTCTGCTTCTTCTGCTTCTTCTGCTTCTTCTTCTGCTT  592

seq1  CTTCTTCTTCTGCTTCTGCTTCTGCTGCTTCTGCTTCTGCTTCTGCTTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTGCTTCTGCTTCTGCTGCTTCTGCTTCTGCTTCTGCTTCT  642

seq1  GCTTCTTTTCTTTGGTAACATGATGGCAAGGTACTCAAGTGTGAACTTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTTCTTTGGTAACATGATGGCAAGGTACTCAAGTGTGAACTTTG  692

seq1  CCAATGTTGTGCCATGATGTGAAAAGATTTGGATACCCCCGCAAGAGGGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTTGTGCCATGATGTGAAAAGATTTGGATACCCCCGCAAGAGGGC  742

seq1  TGGGCAGAGCTGCACATAAGGCCTAATCCCCACAGGCGTGCCTGCCTCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAGCTGCACATAAGGCCTAATCCCCACAGGCGTGCCTGCCTCTT  792

seq1  TAATGCTAGTTTAAGATTAATCAGGTGCATGTGAACCTGAGTGAGGCCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTAGTTTAAGATTAATCAGGTGCATGTGAACCTGAGTGAGGCCAC  842

seq1  TTTCCTCTTCCTTCTGACCCAAACTGAGGGAATGGAATTGAGCTTGATGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCCTTCTGACCCAAACTGAGGGAATGGAATTGAGCTTGATGC  892

seq1  TGCCCAGTACTATGAATCTCTCTATGAGCCCCCAGGGGTTCATGCATAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTACTATGAATCTCTCTATGAGCCCCCAGGGGTTCATGCATAGT  942

seq1  CATGCATGTCTTCCTCTTGGTTGTCTGTCCTGGTGTCTTGGGTGTCCTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGTCTTCCTCTTGGTTGTCTGTCCTGGTGTCTTGGGTGTCCTTT  992

seq1  GGACATTGGGACTTGAGTGTTCTGGGACATCTAAGCTTCGTGCACCCTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGGGACTTGAGTGTTCTGGGACATCTAAGCTTCGTGCACCCTCT  1042

seq1  GTGGAAAAACCTCTCTTAGAATGGCTCTTTCCAGGAGTCTCATGACTGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAACCTCTCTTAGAATGGCTCTTTCCAGGAGTCTCATGACTGGA  1092

seq1  GGGGCAATATCATGTTCCTGTCCCGTGAGTGAAGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAATATCATGTTCCTGTCCCGTGAGTGAAGAATTC  1131