BAC Information

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BAC

Clone NameB6Ng01-296D18
Chromosome10 (Build37)1 (Build37)
Map Location 64,277,807 - 64,278,948102,958,821 - 102,959,333
singlet/doubletsingletsinglet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296D18.bB6Ng01-296D18.g
ACCGA091895GA091896
length1,141951
definitionB6Ng01-296D18.b B6Ng01-296D18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,277,807 - 64,278,948)(102,958,821 - 102,959,333)
sequence
gaattcattgctcagcacagaagcttaaatagagtgtttgagccaatccc
gagcccctaaatcctagatcaatcacatctcgtaccaacaaaagcccttc
ctgaagaggtaactcagaatcagttggggggtagggggaagaacagacac
ccgttaagacttcagagaagatggggaagcagtcacccaggtctcgattc
ctttatgctgtctcactggtgttccaggagctatcttagatctgatgcca
tctatggcagatcaggattctgagtagttttaggaatctgtggtgctctg
ccctccatcctcctttttccttcacaaggttgacttccacacctcccact
agcatcatctgaagcttttaacaatggctgataatctattgtctcaaggt
tatcttttatttatctgcttaatatcttggacacttgaaataaaaatgct
atgaatgtctacgtttttatggctacctgaagtctttcaacgttagtctc
agaaagttttgctgccttcttgataaattgattattatagtttttttaaa
tctatgtatttaaaatcaatattatagatttttctttgaaaatttgtgag
ctgggtatttactttcaagacataacctacatgattattggcatttgtat
tttttttttttactcccattaaatagttcttacctaataaaaaatgtcta
actttactaagtcatggtggaggcagagcatggcattcccatgagatgca
tactcagcatccttatcattggcaacttcattgatttcatacattttttt
tttctttgtgtgggagggtgtatgcctgtctatggtgtctacagtctaca
tatgagtgcggatgtatgggtccttgtacacacatgctgatgagaaacta
agatgctagatggatttctgccttccttcctgactcagggcctcccggtg
aatatggaactgcacacttaggtggagactggcaggcagcagctggagct
tgttttcatactcttattctcaaatttctggggtataagtggtggcacaa
catgttgtgttcttcctacgttgatgctgaatcttaactcaccttctata
atgctaatgaagttcatttttgttaactcggagtcttctct

gaattctcctgggtaaataataaatgtatgttaaactcacaaatacattt
atttgagctgtaatttatatagctcagaagcccttttaaaggggtcagaa
cttcatcctgaaagatgaactgacaatggctgaaattaaaaatgtaagta
taaaaggtatacagaaacagtttcagtaattggagatagcagcttcagat
accttcacaaaaagacggctgtccttattcagtattattgaatgtgtccc
cttttgccaaccctcatttgtaagccaccacatatgttctagtttaattg
tgggagacagggccaacttaaggctttgcttgctgttaagctgtatgggt
gaagggaagaaatactaggcacatcttaggctaggatagagaaaggggta
attttattattattattatttattattattattattattattatttagat
attttctttacttacatttcaaatgttatcccctttcctaatttcccctc
caaaaatgccctatcccctgactccccctgctccccaacacacccactct
gattcctggtcctggcattcccctatactggggcatagaacctttatagg
accaagggcctctcctccctttgaagactgactaggccatcctctgctac
aaactccaccatgtgttttctttgattggtggtatagttctaaggagctc
tgggggtactggttagttcatattgaagttactcctatggggcttcagac
ctcttcagctccctggatactttctctggctctttcattggggaccttgt
gctctgtccaatggatgactatgagcattcaattctgtatttgccgggca
caggtagagcctcacaggagacagctatagcaggctcctgtcagcagact
cttgttggcatctgcctagtttctgagttcggtggttgtttatgggatag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64277807_64278948
seq2: B6Ng01-296D18.b_47_1187

seq1  GAATTCATTGCTCAGCACAGAAGCTTAAATAGAGTGTTTGAGCCAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTCAGCACAGAAGCTTAAATAGAGTGTTTGAGCCAATCCC  50

seq1  GAGCCCCTAAATCCTAGATCAATCACATCTCGTACCAACAAAAGCCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTAAATCCTAGATCAATCACATCTCGTACCAACAAAAGCCCTTC  100

seq1  CTGAAGAGGTAACTCAGAATCAGTTGGGGGGTAGGGGGAAGAACAGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGGTAACTCAGAATCAGTTGGGGGGTAGGGGGAAGAACAGACAC  150

seq1  CCGTTAAGACTTCAGAGAAGATGGGGAAGCAGTCACCCAGGTCTCGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAAGACTTCAGAGAAGATGGGGAAGCAGTCACCCAGGTCTCGATTC  200

seq1  CTTTATGCTGTCTCACTGGTGTTCCAGGAGCTATCTTAGATCTGATGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGCTGTCTCACTGGTGTTCCAGGAGCTATCTTAGATCTGATGCCA  250

seq1  TCTATGGCAGATCAGGATTCTGAGTAGTTTTAGGAATCTGTGGTGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGCAGATCAGGATTCTGAGTAGTTTTAGGAATCTGTGGTGCTCTG  300

seq1  CCCTCCATCCTCCTTTTTCCTTCACAAGGTTGACTTCCACACCTCCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATCCTCCTTTTTCCTTCACAAGGTTGACTTCCACACCTCCCACT  350

seq1  AGCATCATCTGAAGCTTTTAACAATGGCTGATAATCTATTGTCTCAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATCTGAAGCTTTTAACAATGGCTGATAATCTATTGTCTCAAGGT  400

seq1  TATCTTTTATTTATCTGCTTAATATCTTGGACACTTGAAATAAAAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTATTTATCTGCTTAATATCTTGGACACTTGAAATAAAAATGCT  450

seq1  ATGAATGTCTACGTTTTTATGGCTACCTGAAGTCTTTCAACGTTAGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTCTACGTTTTTATGGCTACCTGAAGTCTTTCAACGTTAGTCTC  500

seq1  AGAAAGTTTTGCTGCCTTCTTGATAAATTGATTATTATAGTTTTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTTTGCTGCCTTCTTGATAAATTGATTATTATAGTTTTTTTAAA  550

seq1  TCTATGTATTTAAAATCAATATTATAGATTTTTCTTTGAAAATTTGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATTTAAAATCAATATTATAGATTTTTCTTTGAAAATTTGTGAG  600

seq1  CTGGGTATTTACTTTCAAGACATAACCTACATGATTATTGGCATTTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATTTACTTTCAAGACATAACCTACATGATTATTGGCATTTGTAT  650

seq1  TTTTTTTTTTTACTCCCATTAAATAGTTCTTACCTAATAAAAAATGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTACTCCCATTAAATAGTTCTTACCTAATAAAAAATGTCTA  700

seq1  ACTTTACTAAGTCATGGTGGAGGCAGAGCATGGCATTCCCATGAGATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTAAGTCATGGTGGAGGCAGAGCATGGCATTCCCATGAGATGCA  750

seq1  TACTCAGCATCCTTATCATTGGCAACTTCATTGATTTCATACA-TTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACTCAGCATCCTTATCATTGGCAACTTCATTGATTTCATACATTTTTTT  800

seq1  TTTCTTTGTGTGGGAGGGTGTATGCCTGTCTATGGTGTCTACAGTCTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTGTGGGAGGGTGTATGCCTGTCTATGGTGTCTACAGTCTACA  850

seq1  TATGAGTGCGGATGTATGGGTCCTTGTACACACATGCTGATGAGAAACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGCGGATGTATGGGTCCTTGTACACACATGCTGATGAGAAACTA  900

seq1  AGATGCTAGATGGATTTCTGCCTTCCCTTCCTGACTCAGGGCCTCCCGGT  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGATGCTAGATGGATTTCTGCCTT-CCTTCCTGACTCAGGGCCTCCCGGT  949

seq1  GAATATGGAACTGCACCACTTAGGT-GAGACTGGCAGGCAGCAGGCTGGA  998
      ||||||||||||||| ||||||||| ||||||||||||||||| ||||||
seq2  GAATATGGAACTGCA-CACTTAGGTGGAGACTGGCAGGCAGCA-GCTGGA  997

seq1  GC-TGTTTTCATACTCTTATTCTC-AATTTCTGGGGTTATAAGTG--TGC  1044
      || ||||||||||||||||||||| ||||||||||| ||||||||   ||
seq2  GCTTGTTTTCATACTCTTATTCTCAAATTTCTGGGG-TATAAGTGGTGGC  1046

seq1  ACAACCATG-TGTG-TCTTTCTACGTGGATGCTGGAAATCTTAACTCACC  1092
      |||| |||| |||| |||| |||||| |||||||  ||||||||||||||
seq2  ACAA-CATGTTGTGTTCTTCCTACGTTGATGCTG--AATCTTAACTCACC  1093

seq1  -TCTAT-ATGCTAATGAAAGTCATTTTTTTGTTAACCTCCGGAGTCTTCT  1140
       ||||| |||||||||||  |||  |||||||||||   |||||||||||
seq2  TTCTATAATGCTAATGAAGTTCA--TTTTTGTTAAC--TCGGAGTCTTCT  1139

seq1  CT  1142
      ||
seq2  CT  1141


seq1: chr1_102958821_102959333
seq2: B6Ng01-296D18.g_509_845 (reverse)

seq1  AGCCAGAGAAAGTATCTTGTCTCAGGGA-CAGACTTGAGG-CAAATGCCT  48
      ||||||||||||||||      |||||| | ||   |||| |  | ||| 
seq2  AGCCAGAGAAAGTATC------CAGGGAGCTGA--AGAGGTCTGAAGCC-  41

seq1  AGACACAGGTG---CTCCAATATAGGCATGAAGTTCTCTCCAGCAAGCCT  95
         || ||| |   || ||||      |||||   ||  |||| |  || 
seq2  --CCATAGGAGTAACTTCAAT------ATGAA---CTAACCAGTACCCCC  80

seq1  TCACCTTCAAGATTTTCCTGTCCTTCATACCTGCATAAGCAGCTTAAGCA  145
        | |               ||||| | | ||  || | || |  || ||
seq2  AGAGC---------------TCCTT-AGAACT--AT-ACCACC--AATCA  109

seq1  AAATTTCCATGTGAAAGCTTTCCTCATTTTCCTCATAATTAACATGTTAT  195
      ||          |||| |                       |||||    
seq2  AA----------GAAAAC-----------------------ACATG----  122

seq1  ATCCCTCCTCTCTCTTTCTCATATGTTGTGCTGATTTTTTTTTATTTTTT  245
                                 |||  |              |||
seq2  ---------------------------GTGGAG--------------TTT  131

seq1  GTTAATTGATATAAGATAAAGTCATCTGAGAGGAAAGAACCTTGATTAAG  295
      ||                 ||       ||||||  |  |||      ||
seq2  GT-----------------AG------CAGAGGATGG--CCT------AG  150

seq1  TAATTGCCTTCATAAGACCTATTTATAGACAAGCCTGTAGGACATT-TTC  344
      | |  | ||||| | |           ||  ||     ||| | ||  ||
seq2  TCA--GTCTTCAAAGG-----------GAGGAG-----AGGCCCTTGGTC  182

seq1  CTAATTAGTGATTGATGAGGGAGGGCCCAGCTCATTGTGAGTAGTCTCTT  394
      |||  ||  | ||        | | |||||   || | | | |      |
seq2  CTA--TAAAGGTT------CTATGCCCCAG--TATAG-GGGAA------T  215

seq1  CCCTAGACCAGTGATCCTAGGTTCTATAAGAAGGTGGGTGGGGAAGAAGG  444
       ||  ||||||  |||  ||        ||  |||| || ||| || |||
seq2  GCCAGGACCAGGAATC--AG--------AGTGGGTGTGTTGGGGAGCAGG  255

seq1  G-----CAGGGG------------TGGGGAAGAGTATAGGAGACTTCGGG  477
      |     ||||||            ||| |  ||   ||||| |    |||
seq2  GGGAGTCAGGGGATAGGGCATTTTTGGAGGGGAAATTAGGAAA----GGG  301

seq1  GATAGCATTTGAAATGTAAATGAAGAAAATATCTAA  513
      |||| |||||||||||||| | ||||||||||||||
seq2  GATAACATTTGAAATGTAAGTAAAGAAAATATCTAA  337


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