BAC Information

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BAC

Clone NameB6Ng01-296F13
Chromosome1 (Build37)
Map Location 69,565,195 - 69,694,977
singlet/doubletdoublet
Overlap geneIkzf2
Upstream geneErbb4, LOC667842, EG241084
Downstream geneSpag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296F13.bB6Ng01-296F13.g
ACCGA091980GA091981
length1,1331,122
definitionB6Ng01-296F13.b B6Ng01-296F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,565,195 - 69,566,330)(69,693,851 - 69,694,977)
sequence
gaattcattatcttctccttgccttctgatttttcactagagtggttgtt
tgcataaacagcactgcacatctcatttcttaaaccagaaagtgagaaat
atctgctccatcccaatctgctggctggccctacatttggactacagttg
tatcctgttggatgacagggtatgtatttaaagcccatcatacatctcca
attctgttatcatagaggtccaggctacccacatttcttctatatatcct
tgtctcactttttgtccatgttttgcttgaactaaatacttggctttccc
tggctccttgtcttgcctttttacttcagaattcctaccctttaagaggg
atcatatccttctaccatagatttctaatgtgtgcatcataacataccat
agttctttttaccagaagccttcttgtcctatgaggagaagcataaaaca
gctagaatctaataggagcactaattagagaaccaattacttaatcattt
acattaacttggaaactcaaatgcagttattcaccagctctttgatttag
gtcaatggtcattaatttggatattgatgacccatgcagtctttcttcgt
tataaggcacctcttgtttctacttctctatgtagagtgaaaataaacca
ttgacacaccagtctgaatgtggaattgtggggagggatgtcccactgta
tgtccaattagtagaattttttaagcaatttattttcttgacttttttcc
aaaatcgtcaacttacttaaaacaaacaaacaaacaaaatcccaaacaaa
aagcccaactaattccttttacattctatttcactggattatgtaagtgc
tgtattattatattgcatggttacaataagtcacttggcgacaccagttt
gggaatcaacacaactaattcttggcagggatgcaactgaaccaatgaca
gcggtgtgtaggcttactggagcatgggcctactggctaggaatttcttt
ctgctcagatattcatcagttttttttccaaagggaaattgatagtattg
gctaatggcagtcagttgagttgagctggtgcggaggatgtctgtgcact
ggaactgtcttctcctcatgacttacaggcact

gaattctccttgaacatggcttaatttttatagaaagaggtctgtgcatt
gtgaccgatttcttctcaagactgtacctggaattaaagtagtaagcctg
cttgccaaaggcagcttacacatcaacacggtttgatatatatttaatgg
gtgaatgccagcgaagtgggattgcagtaaaaatgtgtgtaataaaactt
agtcttgtcctgtctaagtttcaccttaggttagagcagggaagtaggaa
gttagaggagcgcccttttctccaggctggactggaggcttctatatcct
taaatagcatagattatgaatctgctcccaccatttcccctacagatctg
gaggtcttcttgctgaagataggagcatgcttgggtatgatagtctgggt
agacacaggagaaacaaacaaacaaacaacacccacctcattttctatta
acatgggtgggccttgattactaaggcctggtacacttattcactctcta
ctctacgcttgtctctcatcttcccttggattctctaggtattgtgttag
cttgtaaatttggagaagtgaagcttacttctacctcctatgaggcttgt
tgaccaactcaatgtcaccagcctcttcagtcagcacttcaggtgatgga
tattgagttcatggattccaggaattgggtactgactcccttatgctgac
cttaatggcactctcttccactactacactaaagggagtaggagaaaaca
gacagagaccaacacggctccagcagagcacatcccagaagcctagcaga
caactgtttacttatcaagttcacagacttgaaatctggagtattaaagc
tatccatcatataccagagagcattggctactaccatggaagagttaaca
acacactgtgtagttaaactatctgcagtgttttaagacgagctgctaag
ttttaattttcttagttacgttcattagaggttttcaagaaaagccttag
ataaactgcttgtactggtgtgtaggaggagagaagaaagacttgctgtt
tattaatcagcaagtattattcccttagaagtagcatatccagcctagtt
tcttttttagttaggattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69565195_69566330
seq2: B6Ng01-296F13.b_48_1180

seq1  GAATTCATTATCTTCTCCTTGCCTTCTGATTTTTCACTAGAGTGGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCTTCTCCTTGCCTTCTGATTTTTCACTAGAGTGGTTGTT  50

seq1  TGCATAAACAGCACTGCACATCTCATTTCTTAAACCAGAAAGTGAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAACAGCACTGCACATCTCATTTCTTAAACCAGAAAGTGAGAAAT  100

seq1  ATCTGCTCCATCCCAATCTGCTGGCTGGCCCTACATTTGGACTACAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCCATCCCAATCTGCTGGCTGGCCCTACATTTGGACTACAGTTG  150

seq1  TATCCTGTTGGATGACAGGGTATGTATTTAAAGCCCATCATACATCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTTGGATGACAGGGTATGTATTTAAAGCCCATCATACATCTCCA  200

seq1  ATTCTGTTATCATAGAGGTCCAGGCTACCCACATTTCTTCTATATATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTATCATAGAGGTCCAGGCTACCCACATTTCTTCTATATATCCT  250

seq1  TGTCTCACTTTTTGTCCATGTTTTGCTTGAACTAAATACTTGGCTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACTTTTTGTCCATGTTTTGCTTGAACTAAATACTTGGCTTTCCC  300

seq1  TGGCTCCTTGTCTTGCCTTTTTACTTCAGAATTCCTACCCTTTAAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTTGTCTTGCCTTTTTACTTCAGAATTCCTACCCTTTAAGAGGG  350

seq1  ATCATATCCTTCTACCATAGATTTCTAATGTGTGCATCATAACATACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCCTTCTACCATAGATTTCTAATGTGTGCATCATAACATACCAT  400

seq1  AGTTCTTTTTACCAGAAGCCTTCTTGTCCTATGAGGAGAAGCATAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTTTACCAGAAGCCTTCTTGTCCTATGAGGAGAAGCATAAAACA  450

seq1  GCTAGAATCTAATAGGAGCACTAATTAGAGAACCAATTACTTAATCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAATCTAATAGGAGCACTAATTAGAGAACCAATTACTTAATCATTT  500

seq1  ACATTAACTTGGAAACTCAAATGCAGTTATTCACCAGCTCTTTGATTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACTTGGAAACTCAAATGCAGTTATTCACCAGCTCTTTGATTTAG  550

seq1  GTCAATGGTCATTAATTTGGATATTGATGACCCATGCAGTCTTTCTTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGGTCATTAATTTGGATATTGATGACCCATGCAGTCTTTCTTCGT  600

seq1  TATAAGGCACCTCTTGTTTCTACTTCTCTATGTAGAGTGAAAATAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGCACCTCTTGTTTCTACTTCTCTATGTAGAGTGAAAATAAACCA  650

seq1  TTGACACACCAGTCTGAATGTGGAATTGTGGGGAGGGATGTCCCACTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACACCAGTCTGAATGTGGAATTGTGGGGAGGGATGTCCCACTGTA  700

seq1  TGTCCAATTAGTAGAATTTTTTAAGCAATTTATTTTCTTGACTTTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAATTAGTAGAATTTTTTAAGCAATTTATTTTCTTGACTTTTTTCC  750

seq1  AAAATCGTCAACTTACTTAAAACAAACAAACAAACAAAATCCCAAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCGTCAACTTACTTAAAACAAACAAACAAACAAAATCCCAAACAAA  800

seq1  AAGCCCAACTAATTCCTTTTACATTCTATTTCACTGGATTATGTAAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAACTAATTCCTTTTACATTCTATTTCACTGGATTATGTAAGTGC  850

seq1  TGTATTATTATATTGCATGGTTACAATAAGTCACTTGGCGACACCAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATTATATTGCATGGTTACAATAAGTCACTTGGCGACACCAGTTT  900

seq1  GGGAATCAACACAACTAATTCTTGGCAGGGATGCAACTGAACCAATGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCAACACAACTAATTCTTGGCAGGGATGCAACTGAACCAATGACA  950

seq1  GCGGTGTGTAGGCTTACTGGAGCAT-GGCCTACTGGCTAGGATTTTCTTT  999
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GCGGTGTGTAGGCTTACTGGAGCATGGGCCTACTGGCTAGGAATTTCTTT  1000

seq1  CTGCTCAGAATATTCATCAGTTTTTTTTTCCAAAGGAAATTGATAGTATT  1049
      |||||||| ||||||||||||||||||| | || ||||||||||||||||
seq2  CTGCTCAG-ATATTCATCAGTTTTTTTTCCAAAGGGAAATTGATAGTATT  1049

seq1  GGCTAAATTGCCAAGTCAGTTGAGTTGAGCT-GTGCGGAGAGAATGTCTG  1098
      ||||||  || | |||||||||||||||||| |||||  ||| |||||||
seq2  GGCTAA--TGGC-AGTCAGTTGAGTTGAGCTGGTGCG--GAGGATGTCTG  1094

seq1  TGCACT-GAACTGTCTTCTCCTCATGGACTACAGGCACT  1136
      |||||| |||||||||||||||||||   ||||||||||
seq2  TGCACTGGAACTGTCTTCTCCTCATGACTTACAGGCACT  1133


seq1: chr1_69693851_69694977
seq2: B6Ng01-296F13.g_71_1192 (reverse)

seq1  AAATA--CCTAATTAAAAAAGAAACTAGCCTTGGGATATGCCTTCCTTCT  48
      |||||  ||||| ||||||||||||||| ||  ||||||||  | |||||
seq2  AAATAATCCTAACTAAAAAAGAAACTAGGCT--GGATATGC--TACTTCT  46

seq1  AAGGAATTAATACTTGCTGGATTAAATAAACAGCAAGTCTTTC-TCTCTC  97
      |||| | ||||||||||| |||| ||||||||||||||||||| ||||||
seq2  AAGGGAATAATACTTGCT-GATT-AATAAACAGCAAGTCTTTCTTCTCTC  94

seq1  CTCCCTTACACACAAGTACAAGCAGTTTATCTTAAGGC-TTTCTTGAAAA  146
      ||||  ||||||| ||||||||||||||||| |||||| |||||||||||
seq2  CTCC--TACACACCAGTACAAGCAGTTTATC-TAAGGCTTTTCTTGAAAA  141

seq1  CCTCTAATGAACGTAACTAAG-AAATTAAAACTTAGCAGCTCGTCTTAAA  195
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTCTAATGAACGTAACTAAGAAAATTAAAACTTAGCAGCTCGTCTTAAA  191

seq1  ACACTGCAGATAGTTTAACTACACAGTGTGTTTGTTAACTCTTCCATGGT  245
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACACTGCAGATAGTTTAACTACACAGTGTG-TTGTTAACTCTTCCATGGT  240

seq1  AGTAGCCAATGCTCTCTGGTATATGATGGATAGCTTTAATACTCCAGATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCAATGCTCTCTGGTATATGATGGATAGCTTTAATACTCCAGATT  290

seq1  TCAAGTCTGTGAACTTGATAAGTAAACAGTTGTCTGCTAGGCTTCTGGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTGTGAACTTGATAAGTAAACAGTTGTCTGCTAGGCTTCTGGGA  340

seq1  TGTGCTCTGCTGGAGCCGTGTTGGTCTCTGTCTGTTTTCTCCTACTCCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGCTGGAGCCGTGTTGGTCTCTGTCTGTTTTCTCCTACTCCCT  390

seq1  TTAGTGTAGTAGTGGAAGAGAGTGCCATTAAGGTCAGCATAAGGGAGTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTAGTAGTGGAAGAGAGTGCCATTAAGGTCAGCATAAGGGAGTCA  440

seq1  GTACCCAATTCCTGGAATCCATGAACTCAATATCCATCACCTGAAGTGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAATTCCTGGAATCCATGAACTCAATATCCATCACCTGAAGTGCT  490

seq1  GACTGAAGAGGCTGGTGACATTGAGTTGGTCAACAAGCCTCATAGGAGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGAGGCTGGTGACATTGAGTTGGTCAACAAGCCTCATAGGAGGT  540

seq1  AGAAGTAAGCTTCACTTCTCCAAATTTACAAGCTAACACAATACCTAGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGCTTCACTTCTCCAAATTTACAAGCTAACACAATACCTAGAG  590

seq1  AATCCAAGGGAAGATGAGAGACAAGCGTAGAGTAGAGAGTGAATAAGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGGGAAGATGAGAGACAAGCGTAGAGTAGAGAGTGAATAAGTGT  640

seq1  ACCAGGCCTTAGTAATCAAGGCCCACCCATGTTAATAGAAAATGAGGTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCCTTAGTAATCAAGGCCCACCCATGTTAATAGAAAATGAGGTGG  690

seq1  GTGTTGTTTGTTTGTTTGTTTCTCCTGTGTCTACCCAGACTATCATACCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTTTGTTTGTTTGTTTCTCCTGTGTCTACCCAGACTATCATACCC  740

seq1  AAGCATGCTCCTATCTTCAGCAAGAAGACCTCCAGATCTGTAGGGGAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCTCCTATCTTCAGCAAGAAGACCTCCAGATCTGTAGGGGAAAT  790

seq1  GGTGGGAGCAGATTCATAATCTATGCTATTTAAGGATATAGAAGCCTCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGCAGATTCATAATCTATGCTATTTAAGGATATAGAAGCCTCCA  840

seq1  GTCCAGCCTGGAGAAAAGGGCGCTCCTCTAACTTCCTACTTCCCTGCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCCTGGAGAAAAGGGCGCTCCTCTAACTTCCTACTTCCCTGCTCT  890

seq1  AACCTAAGGTGAAACTTAGACAGGACAAGACTAAGTTTTATTACACACAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAGGTGAAACTTAGACAGGACAAGACTAAGTTTTATTACACACAT  940

seq1  TTTTACTGCAATCCCACTTCGCTGGCATTCACCCATTAAATATATATCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGCAATCCCACTTCGCTGGCATTCACCCATTAAATATATATCAA  990

seq1  ACCGTGTTGATGTGTAAGCTGCCTTTGGCAAGCAGGCTTACTACTTTAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGTTGATGTGTAAGCTGCCTTTGGCAAGCAGGCTTACTACTTTAAT  1040

seq1  TCCAGGTACAGTCTTGAGAAGAAATCGGTCACAATGCACAGACCTCTTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTACAGTCTTGAGAAGAAATCGGTCACAATGCACAGACCTCTTTC  1090

seq1  TATAAAAATTAAGCCATGTTCAAGGAGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  TATAAAAATTAAGCCATGTTCAAGGAGAATTC  1122


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