BAC Information

Click to search

BAC

Clone NameB6Ng01-296J11
Chromosome1 (Build37)
Map Location 163,446,027 - 163,547,799
singlet/doubletdoublet
Overlap geneEG435650
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
Downstream geneLOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296J11.bB6Ng01-296J11.g
ACCGA092165GA092166
length1,1091,161
definitionB6Ng01-296J11.b B6Ng01-296J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,446,027 - 163,447,133)(163,546,641 - 163,547,799)
sequence
gaattcatttaatgaaatgcctttgtcataaattctttcctgtcttttaa
ctctctagatatccaggcagagttggatatatttccaactaattgagttt
tattcacatctttattattataattattttagttatatgttttatattta
ctttcatatttttcttcatactggactatcaacttcttaatagaaaaaaa
atccttcttattactactgccagcgtttacatgatatttgatgtgtagca
gttacttaaaaatattactaagagaaattggaataaatgttaattaaact
cagtgagtcacacacagaaagacgatatgaaacagaatagggacatgttg
aaaataagtccaagaggagagagggacaacgagagggggtgagggatgaa
gacaactaaaatttattatgtaaatgtgtgatatttttaaacgatttaaa
gaattttttttaaagcgaagaaagcaatccacgttctgaagaactccttt
gactttatcataaaggcctatgtgattctattattaataacgggtcaagt
atttattttgcttaattatttttctttaaacaaagaaggaaaaaagcaca
tataatcagatttccccattactaacttgaactcctcctagactgtagct
ggttgggctctctttcagaagctttgtgtcgctatttaaaaattgccttc
atcctatgccccacctgtcgtgctttacttacgagctgtcgattggagcc
cagctgtaaaactgtctggccacatctctcctctctgtgcccttctttat
cattcactggagagaggcgccagtgcagcatcaggaatcctgtatagact
ctctcagcactctctcctctctgcctcccccagttgtatttcagtgtatc
cttcctgactctcaaaaccatttatacaatcagccttccacaatacagga
ttatggctaatgactctttttcagaagttacttttgtgataacttttata
gttgtccttaatctatagccagtgcatgaaagaaccttaggctggaagga
tttatgaaccctattgactacaacatcctgaaagtgataagaactgcctt
acagataga
gaattcctctcacatgaagagaactgctagattagtgttctggcttcagt
tatctcagatgtctttttttttttaaagtgatgaccaagtgtctcgttaa
tattccctaaatagcaccccaaaatattttctggtgttttttttttgtta
ttttgggtttttatttttatttttatatttatttgtttgtttgtttgttt
gtttcaagacagtgtttctctgtgtagcccgggctgtcctggaactcact
ctgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcc
caagtgctaggattaaaggcatatgccaccactgctctgcccaaaatgtt
ttctgaattctaaatttctatcaaggcagccattcctgtaatttttacaa
tcacttatctgtataatacatttaaaatgctttattggtagtaataacaa
gaaataataactgatctagtatttgtgtatatattacatcctagttattt
tccatagaattcccatgaattttatattactaacaacagtataaagtgct
tattatctctatacttctgatcatgaaactggatcagagatcaaatgttt
tgcctattcattcattagtaaatggtagaactaggcttcatctccaggaa
atttaggggcaaaagctggcacttaaaccccacttaacattacctaacag
actatcgccattgttcttaacaccactgggttttccagtggattcttagg
agcagcagcacacaacagcagagtgtttgttggagggaacattggtgatg
cctttcagatgcaagtccgagaaggatgctggagcagtggctgtggacaa
tggaaaagcacagtgttgggtagaacattccagtctcaggacgagaggac
ttagaaatgagggtggcaagtggattggaccttctcactatggctctctg
ccggttcccttccaggagctggtgagtagagctgagagtgaacctgtatg
tgccgtgatgctgagtgtcctgtgcgcataggcatgtgtgaaagaattca
gagtctatcgcattcagtctagatgttactgtgaccgtatgcactgactg
caatcccagacagaacactcaatctatgtctagaatagacagctgataag
gtgtcgcgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_163446027_163447133
seq2: B6Ng01-296J11.b_42_1150

seq1  GAATTCATTTAATGAAATGCCTTTGTCATAAATTCTTTCCTGTCTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAATGAAATGCCTTTGTCATAAATTCTTTCCTGTCTTTTAA  50

seq1  CTCTCTAGATATCCAGGCAGAGTTGGATATATTTCCAACTAATTGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAGATATCCAGGCAGAGTTGGATATATTTCCAACTAATTGAGTTT  100

seq1  TATTCACATCTTTATTATTATAATTATTTTAGTTATATGTTTTATATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACATCTTTATTATTATAATTATTTTAGTTATATGTTTTATATTTA  150

seq1  CTTTCATATTTTTCTTCATACTGGACTATCAACTTCTTAATAGAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATATTTTTCTTCATACTGGACTATCAACTTCTTAATAGAAAAAAA  200

seq1  ATCCTTCTTATTACTACTGCCAGCGTTTACATGATATTTGATGTGTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTTATTACTACTGCCAGCGTTTACATGATATTTGATGTGTAGCA  250

seq1  GTTACTTAAAAATATTACTAAGAGAAATTGGAATAAATGTTAATTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAAAAATATTACTAAGAGAAATTGGAATAAATGTTAATTAAACT  300

seq1  CAGTGAGTCACACACAGAAAGACGATATGAAACAGAATAGGGACATGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTCACACACAGAAAGACGATATGAAACAGAATAGGGACATGTTG  350

seq1  AAAATAAGTCCAAGAGGAGAGAGGGACAACGAGAGGGGGTGAGGGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTCCAAGAGGAGAGAGGGACAACGAGAGGGGGTGAGGGATGAA  400

seq1  GACAACTAAAATTTATTATGTAAATGTGTGATATTTTTAAACGATTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTAAAATTTATTATGTAAATGTGTGATATTTTTAAACGATTTAAA  450

seq1  GAATTTTTTTTAAAGCGAAGAAAGCAATCCACGTTCTGAAGAACTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTTTAAAGCGAAGAAAGCAATCCACGTTCTGAAGAACTCCTTT  500

seq1  GACTTTATCATAAAGGCCTATGTGATTCTATTATTAATAACGGGTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATCATAAAGGCCTATGTGATTCTATTATTAATAACGGGTCAAGT  550

seq1  ATTTATTTTGCTTAATTATTTTTCTTTAAACAAAGAAGGAAAAAAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGCTTAATTATTTTTCTTTAAACAAAGAAGGAAAAAAGCACA  600

seq1  TATAATCAGATTTCCCCATTACTAACTTGAACTCCTCCTAGACTGTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCAGATTTCCCCATTACTAACTTGAACTCCTCCTAGACTGTAGCT  650

seq1  GGTTGGGCTCTCTTTCAGAAGCTTTGTGTCGCTATTTAAAAATTGCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGCTCTCTTTCAGAAGCTTTGTGTCGCTATTTAAAAATTGCCTTC  700

seq1  ATCCTATGCCCCACCTGTCGTGCTTTACTTACGAGCTGTCGATTGGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATGCCCCACCTGTCGTGCTTTACTTACGAGCTGTCGATTGGAGCC  750

seq1  CAGCTGTAAAACTGTCTGGCCACATCTCTCCTCTCTGTGCCCTTCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAAAACTGTCTGGCCACATCTCTCCTCTCTGTGCCCTTCTTTAT  800

seq1  CATTCACTGGAGAGAGGCGCCAGTGCAGCATCAGGAATCCTGTATAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTGGAGAGAGGCGCCAGTGCAGCATCAGGAATCCTGTATAGACT  850

seq1  CTCTCAGCACTCTCTCCTCTCTGCCTCCCCCAGTTGTATTTCAGTGTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCACTCTCTCCTCTCTGCCTCCCCCAGTTGTATTTCAGTGTATC  900

seq1  CTTCCTGACTCTCAAAACCATTTATACAATCAGCCTTCCACAAATACAGG  950
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  CTTCCTGACTCTCAAAACCATTTATACAATCAGCCTTCCAC-AATACA-G  948

seq1  GATTATGGCTAATGACTC-TTTTCAGAAGTTACTTTTGTGATAAC-TTTA  998
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GATTATGGCTAATGACTCTTTTTCAGAAGTTACTTTTGTGATAACTTTTA  998

seq1  TAGTTGTCC-TAATCTATAGCCAGTGCATGAAAGAA-CTTAAGCTGGAGG  1046
      ||||||||| |||||||||||||||||||||||||| |||| |||||| |
seq2  TAGTTGTCCTTAATCTATAGCCAGTGCATGAAAGAACCTTAGGCTGGAAG  1048

seq1  AATTTAATGAACCCTATT-ACTACAACATCTTAAAAGTGATAAGAAACTG  1095
       |||| |||||||||||| ||||||||||| | ||||||||||| |||||
seq2  GATTT-ATGAACCCTATTGACTACAACATCCTGAAAGTGATAAG-AACTG  1096

seq1  CC-TACAGATAGA  1107
      || ||||||||||
seq2  CCTTACAGATAGA  1109

seq1: chr1_163546641_163547799
seq2: B6Ng01-296J11.g_64_1224 (reverse)

seq1  GAACGCGGCACACTTTATCAGCCTTCTCTATCTTAGACATTGAT--AGTG  48
      |||||||  |||| ||||||||  | |||||  ||||||| |||  ||||
seq2  GAACGCG--ACACCTTATCAGC--TGTCTATTCTAGACATAGATTGAGTG  46

seq1  -TCTGTCTGGGA-TGCAGTCAGTGCATACGTTCACAGTAACATCTAGACT  96
       ||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  TTCTGTCTGGGATTGCAGTCAGTGCATACGGTCACAGTAACATCTAGACT  96

seq1  G-ATGCGATAGACTCTGGA-TCTTTCACACATGCCTATGCGCACAGGACA  144
      | ||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  GAATGCGATAGACTCTGAATTCTTTCACACATGCCTATGCGCACAGGACA  146

seq1  CTCAGCATCACCGGCACATACAGGTTCACTCTCAGCTCTACTCACCAGCT  194
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATCA-CGGCACATACAGGTTCACTCTCAGCTCTACTCACCAGCT  195

seq1  CCTGGAAGGAACCCGGCAGAGAGCCATAGTGAGAAGGTCCAATCCACTTG  244
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGGGAACCGGCAGAGAGCCATAGTGAGAAGGTCCAATCCACTTG  245

seq1  CCACCCTCATTTCTAAGTCCTCTCGTCCTGAGACTGGAATGTTCTACCCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCATTTCTAAGTCCTCTCGTCCTGAGACTGGAATGTTCTACCCA  295

seq1  ACACTGTGCTTTTCCATTGTCCACAGCCACTGCTCCAGCATCCTTCTCGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGCTTTTCCATTGTCCACAGCCACTGCTCCAGCATCCTTCTCGG  345

seq1  ACTTGCATCTG-AAGGCATCACCAATGTTCCCTCCAACAAACACTCTGCT  393
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATCTGAAAGGCATCACCAATGTTCCCTCCAACAAACACTCTGCT  395

seq1  GTTGTGTGCTGCTGCTCCTAAGAATCCACTGGAAAACCCAGTGGTGTTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGCTGCTGCTCCTAAGAATCCACTGGAAAACCCAGTGGTGTTAA  445

seq1  GAACAATGGCGATAGTCTGTTAGGTAATGTTAAGTGGGGTTTAAGTGCCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGGCGATAGTCTGTTAGGTAATGTTAAGTGGGGTTTAAGTGCCA  495

seq1  GCTTTTGCCCCTAAATTTCCTGGAGATGAAGCCTAGTTCTACCATTTACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCCCCTAAATTTCCTGGAGATGAAGCCTAGTTCTACCATTTACT  545

seq1  AATGAATGAATAGGCAAAACATTTGATCTCTGATCCAGTTTCATGATCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAATAGGCAAAACATTTGATCTCTGATCCAGTTTCATGATCAG  595

seq1  AAGTATAGAGATAATAAGCACTTTATACTGTTGTTAGTAATATAAAATTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAGAGATAATAAGCACTTTATACTGTTGTTAGTAATATAAAATTC  645

seq1  ATGGGAATTCTATGGAAAATAACTAGGATGTAATATATACACAAATACTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATTCTATGGAAAATAACTAGGATGTAATATATACACAAATACTA  695

seq1  GATCAGTTATTATTTCTTGTTATTACTACCAATAAAGCATTTTAAATGTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTATTATTTCTTGTTATTACTACCAATAAAGCATTTTAAATGTA  745

seq1  TTATACAGATAAGTGATTGTAAAAATTACAGGAATGGCTGCCTTGATAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGATAAGTGATTGTAAAAATTACAGGAATGGCTGCCTTGATAGA  795

seq1  AATTTAGAATTCAGAAAACATTTTGGGCAGAGCAGTGGTGGCATATGCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAATTCAGAAAACATTTTGGGCAGAGCAGTGGTGGCATATGCCT  845

seq1  TTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGG  895

seq1  CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCCGGGCTACACAGAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCCGGGCTACACAGAGA  945

seq1  AACACTGTCTTGAAACAAACAAACAAACAAACAAATAAATATAAAAATAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTCTTGAAACAAACAAACAAACAAACAAATAAATATAAAAATAA  995

seq1  AAATAAAAACCCAAAATAACAAAAAAAAAACACCAGAAAATATTTTGGGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAACCCAAAATAACAAAAAAAAAACACCAGAAAATATTTTGGGG  1045

seq1  TGCTATTTAGGGAATATTAACGAGACACTTGGTCATCACTTTAAAAAAAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTAGGGAATATTAACGAGACACTTGGTCATCACTTTAAAAAAAA  1095

seq1  AAAGACATCTGAGATAACTGAAGCCAGAACACTAATCTAGCAGTTCTCTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATCTGAGATAACTGAAGCCAGAACACTAATCTAGCAGTTCTCTT  1145

seq1  CATGTGAGAGGAATTC  1159
      ||||||||||||||||
seq2  CATGTGAGAGGAATTC  1161