BAC Information

Click to search

BAC

Clone NameB6Ng01-296J18
Chromosome1 (Build37)
Map Location 34,284,043 - 34,392,622
singlet/doubletdoublet
Overlap geneDst, LOC100040913, LOC383629
Upstream geneLOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296J18.bB6Ng01-296J18.g
ACCGA092177GA092178
length1,0091,153
definitionB6Ng01-296J18.b B6Ng01-296J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,392,091 - 34,392,622)(34,284,043 - 34,285,187)
sequence
gaattctctatatttggacttaacattcaattgaatttcaccaaaatctt
tctagaaccttcactccgaagattaaaaaccaaaggggagagagtctgct
aacaggaatattttttcattttaggttaagaagactccatgtctatgttt
tcccacctgaaacaaagcacaaaatcccctaaaataaaagctagaatgga
atcagacaagttatatgttagccacacatactgaaactgtaggaacataa
tcatctcccaagtgaggtgggaagagctcattgctgaggatggcacacat
cgggtacagcacaggtaaatacgtcacaactgagatggaaacgtccttcc
tgcaggctggtggatgagaaaaggcaccgtggatccccagcacgctagta
ccaaccttccaggcaagatgctccaatggtgtgttactggtatgattgta
tctggggtaacccaagcactttcttatcagacttgaggcctgcttcaagg
ggagaatacatttctggtactgcagacctgggtgaaagcctatggttggg
gtgtcataggccctccaaagtaatttcctgtgggaagccacatgtgccgt
tgcagagtggcactgactactgctggccaccacgcataagtttggacaaa
caaccaatgtgtacatatgcagtaaagttttttgcaaagacactgcctgg
cccgggcatgataatgaggtatgataatgagattctgtaaggttctgaga
gtataaccaatcagatgtgagacatgcaaatgaggtatgataatgaggtt
ctgtaaagtactgagagagagtaaccaatcagatgtgagacatgcaaatg
agatatgataatgaggctctgtgaggtacagagagagagagtagccaatc
agatgaggaacatgcaaatgaggcttaatgcataaccaatccgagtgtga
gacacgcctctcctaggcctataaagcagcaccagttctgggctcggggt
ctcttcccc
gaattcagatatctgcctgcctctgcctgcctccacctcttgggagctag
gatcaaaggcatgccccaccaccttccagctgcttattttaatttttact
gttttactatttttattttagagagagaaagagaagaactcgagttatat
gggtagaaatgtgaagaggatctggcaggagttgggggaggggaaaatat
aattccagtgtatttatgattaaaagaagaagtgagtgggtgattgatag
tccagagctgtactagtattgactggtcattctgatgtagagaagacagt
ctgagaacaggcctggtatgttgtgtccacaccttgtaccttcatcttta
cctgtttccatggccctcatagctgtcttcttgccccagctccctttaat
ggtatttatgtctcctttttccctctgtcaatagctcaagtttgcttaca
gttcttttagtcagtgctaaaggtctgctttaggataatgtataccacct
tctggaggtttttgttgttgttgttgttttaatagataatgttaaaaatc
ttaatacacttttggtctcactttcagagaatcatgttcagcacctccag
tcagcctgtgcgagctcacaccagtttcagcaaatgtctaaggatttcca
agcatggcttgacgccaagaaagaagagcagagggactctcccccgattt
ccgcaaagctggatgtcttggagtcgttacttaactcgcagaaagacttt
ggcaaaactttcactgagcagtctaacatttacgagaaaaccatttcaga
aaggcgaaaacctgttattgaagacacagggggcagagaaaggcagctct
acagttgcagctgaacaccatgaaaacagactgggaccgatttagaaaac
aggtgaaagaaagggaagagaaattgaaagactcgttggaaaaagctctc
aagtacagagagcaagtgggagactcttgcggccgtggatagacagatgt
cagcacagcctgacgccgtgacgttcttccctggaatcccacctgaatca
gagaagttccattcgcccgagtttaaggtcctgcaagaagggaatggacc
acccacttggcttggctggacttactgacaaccagacatagcctgctcag
cgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_34392091_34392622
seq2: B6Ng01-296J18.b_42_573 (reverse)

seq1  CCCAGGTCTGCAGTACCAGAAATGTATTCTCCCCTTGAAGCAGGCCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCTGCAGTACCAGAAATGTATTCTCCCCTTGAAGCAGGCCTCAA  50

seq1  GTCTGATAAGAAAGTGCTTGGGTTACCCCAGATACAATCATACCAGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATAAGAAAGTGCTTGGGTTACCCCAGATACAATCATACCAGTAAC  100

seq1  ACACCATTGGAGCATCTTGCCTGGAAGGTTGGTACTAGCGTGCTGGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTGGAGCATCTTGCCTGGAAGGTTGGTACTAGCGTGCTGGGGAT  150

seq1  CCACGGTGCCTTTTCTCATCCACCAGCCTGCAGGAAGGACGTTTCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGTGCCTTTTCTCATCCACCAGCCTGCAGGAAGGACGTTTCCATCT  200

seq1  CAGTTGTGACGTATTTACCTGTGCTGTACCCGATGTGTGCCATCCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTGACGTATTTACCTGTGCTGTACCCGATGTGTGCCATCCTCAGC  250

seq1  AATGAGCTCTTCCCACCTCACTTGGGAGATGATTATGTTCCTACAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTCTTCCCACCTCACTTGGGAGATGATTATGTTCCTACAGTTTC  300

seq1  AGTATGTGTGGCTAACATATAACTTGTCTGATTCCATTCTAGCTTTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGTGGCTAACATATAACTTGTCTGATTCCATTCTAGCTTTTATT  350

seq1  TTAGGGGATTTTGTGCTTTGTTTCAGGTGGGAAAACATAGACATGGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGATTTTGTGCTTTGTTTCAGGTGGGAAAACATAGACATGGAGTC  400

seq1  TTCTTAACCTAAAATGAAAAAATATTCCTGTTAGCAGACTCTCTCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACCTAAAATGAAAAAATATTCCTGTTAGCAGACTCTCTCCCCTT  450

seq1  TGGTTTTTAATCTTCGGAGTGAAGGTTCTAGAAAGATTTTGGTGAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTAATCTTCGGAGTGAAGGTTCTAGAAAGATTTTGGTGAAATTC  500

seq1  AATTGAATGTTAAGTCCAAATATAGAGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  AATTGAATGTTAAGTCCAAATATAGAGAATTC  532

seq1: chr1_34284043_34285187
seq2: B6Ng01-296J18.g_71_1223

seq1  GAATTCAGATATCTGCCTGCCTCTGCCTGCCTCCACCTCTTGGGAGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATATCTGCCTGCCTCTGCCTGCCTCCACCTCTTGGGAGCTAG  50

seq1  GATCAAAGGCATGCCCCACCACCTTCCAGCTGCTTATTTTAATTTTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGGCATGCCCCACCACCTTCCAGCTGCTTATTTTAATTTTTACT  100

seq1  GTTTTACTATTTTTATTTTAGAGAGAGAAAGAGAAGAACTCGAGTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTATTTTTATTTTAGAGAGAGAAAGAGAAGAACTCGAGTTATAT  150

seq1  GGGTAGAAATGTGAAGAGGATCTGGCAGGAGTTGGGGGAGGGGAAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAAATGTGAAGAGGATCTGGCAGGAGTTGGGGGAGGGGAAAATAT  200

seq1  AATTCCAGTGTATTTATGATTAAAAGAAGAAGTGAGTGGGTGATTGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGTGTATTTATGATTAAAAGAAGAAGTGAGTGGGTGATTGATAG  250

seq1  TCCAGAGCTGTACTAGTATTGACTGGTCATTCTGATGTAGAGAAGACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCTGTACTAGTATTGACTGGTCATTCTGATGTAGAGAAGACAGT  300

seq1  CTGAGAACAGGCCTGGTATGTTGTGTCCACACCTTGTACCTTCATCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACAGGCCTGGTATGTTGTGTCCACACCTTGTACCTTCATCTTTA  350

seq1  CCTGTTTCCATGGCCCTCATAGCTGTCTTCTTGCCCCAGCTCCCTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCCATGGCCCTCATAGCTGTCTTCTTGCCCCAGCTCCCTTTAAT  400

seq1  GGTATTTATGTCTCCTTTTTCCCTCTGTCAATAGCTCAAGTTTGCTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTATGTCTCCTTTTTCCCTCTGTCAATAGCTCAAGTTTGCTTACA  450

seq1  GTTCTTTTAGTCAGTGCTAAAGGTCTGCTTTAGGATAATGTATACCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTAGTCAGTGCTAAAGGTCTGCTTTAGGATAATGTATACCACCT  500

seq1  TCTGGAGGTTTTTGTTGTTGTTGTTGTTTTAATAGATAATGTTAAAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGTTTTTGTTGTTGTTGTTGTTTTAATAGATAATGTTAAAAATC  550

seq1  TTAATACACTTTTGGTCTCACTTTCAGAGAATCATGTTCAGCACCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACACTTTTGGTCTCACTTTCAGAGAATCATGTTCAGCACCTCCAG  600

seq1  TCAGCCTGTGCGAGCTCACACCAGTTTCAGCAAATGTCTAAGGATTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGTGCGAGCTCACACCAGTTTCAGCAAATGTCTAAGGATTTCCA  650

seq1  AGCATGGCTTGACGCCAAGAAAGAAGAGCAGAGGGACTCTCCCCCGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCTTGACGCCAAGAAAGAAGAGCAGAGGGACTCTCCCCCGATTT  700

seq1  CCGCAAAGCTGGATGTCTTGGAGTCGTTACTTAACTCGCAGAAAGACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAAGCTGGATGTCTTGGAGTCGTTACTTAACTCGCAGAAAGACTTT  750

seq1  GGCAAAACTTTCACTGAGCAGTCTAACATTTACGAGAAAACCATTTCAG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCAAAACTTTCACTGAGCAGTCTAACATTTACGAGAAAACCATTTCAGA  800

seq1  AAGGCGAAAACCTGTTATTGAAGACACAGGGGGCAGAG-AAGGCAGCTCT  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGGCGAAAACCTGTTATTGAAGACACAGGGGGCAGAGAAAGGCAGCTCT  850

seq1  ACAGTTGCAGCTGAACACCATGAAAACAGACTGGGACCGATTTAGAAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCAGCTGAACACCATGAAAACAGACTGGGACCGATTTAGAAAAC  900

seq1  AGGTGAAAGAAAGGGAAGAGAAATTGAAAGACTCGTTGGAAAAAGCCCTC  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGTGAAAGAAAGGGAAGAGAAATTGAAAGACTCGTTGGAAAAAGCTCTC  950

seq1  AAGTACAGAGAGCAAGT-GGAGACTC-TGCGGCCGTGGATAGACAGATGT  996
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  AAGTACAGAGAGCAAGTGGGAGACTCTTGCGGCCGTGGATAGACAGATGT  1000

seq1  CAGCACAGCCTGGACGGCGTGACGTTC-TCCCTGG-ATCCCA-CTGAATC  1043
      ||||||||||| |||| |||||||||| ||||||| |||||| |||||||
seq2  CAGCACAGCCT-GACGCCGTGACGTTCTTCCCTGGAATCCCACCTGAATC  1049

seq1  AGAG-AGTTCCA-TCG-CCGAGTTAAAGTCCCTGC-AGAAGGAAATGGAC  1089
      |||| ||||||| ||| ||||||| |||  ||||| |||||| |||||||
seq2  AGAGAAGTTCCATTCGCCCGAGTTTAAGGTCCTGCAAGAAGGGAATGGAC  1099

seq1  CA-CCACTTTGGTATGCTGGAACTACTGAACAACACAGCCAATAGCCTGC  1138
      || |||||| | |  ||||||  ||||| ||||| ||| | |||||||||
seq2  CACCCACTTGGCTTGGCTGGACTTACTG-ACAAC-CAGAC-ATAGCCTGC  1146

seq1  TCAGCGT  1145
      |||||||
seq2  TCAGCGT  1153