BAC Information

Click to search

BAC

Clone NameB6Ng01-297B08
Chromosome1 (Build37)
Map Location 143,560,479 - 143,561,697
singlet/doubletsinglet
Overlap genenone
Upstream geneEG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297B08.bB6Ng01-297B08.g
ACCGA092533GA092534
length1,2061,187
definitionB6Ng01-297B08.b B6Ng01-297B08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatatactctcctttagttctgtgtttaagtactgaaggatcaa
gacatcatatttagccatggaagagttcttatttcaaataatttgtattg
aaagttctatactttatgataaaattgctagaatatcttcatatattatt
tttcaaaacttagtttcaatttatcataaaacttgtctgtagaaaacatt
ttatattgtttttcaatcaatattactagcaataaacaaaaaattgacaa
tacagtattttcaatgtttatttgatgaaatgtgaataattttatgaaat
attccagctcttttctttcaaagttgaaaacaccagcaatcaacttgtca
attcattatttctttttgtgaataaagcagcttttcattttacttatttt
ctctattggcagtattaatggcattaatctcaaaaaacaatttgaaataa
aactaaaaagacatttctaacagctatttatagaactgctctgaccacca
ctgtactgcaaatataataacacttattgggttctgctgaacaattcaaa
agactcatgaatataaatcacttacttagtattgcatagcagactgtata
ttcatgcatatctgtttatatgttggtttgtatatgtcaaatccagactt
cattatgtttaatccagataatttacactataatattcaaattttagcca
tttattctggttttacatgtcttaatcacacgtttaccaatcttattagt
tgcttcaaatttgggtttcttatttttttggttttgatcaaaattgtgac
catagcattgtaactgttgttataagggtaatcagagaataagttttgtc
aaaatagttcttatttagtaaatctgaacatataaagaccctgttttatt
attatcaataaaaatgtacacagagcatagaatgttctcatcaaaatgct
gtgtatattatttctctttctaagttgcatttaattttaatgcatttttc
tgcttttgctatgtcttaatttatatctttacacatttaatttttattta
tttttgtagtaaaaatttatatgatgagtttttatttaaaactaaaaact
acaccataaaagttgagtttatggagattatatttttcccttcatcaaat
tgatcacgttttgcagatccacaattatttggtgcatgctcataaaaaaa
gtgtgc

gaattcccgttacagcaagtcctggatgccccaacacactggaaattgaa
gatttgggtttaaaatcatttctcgtgatgctggtagaggattttaagaa
ggacattaatagaaatacagaagaacacagataaactggttaacagctaa
acccttaaagaagaaacaaaaaatctcttaaagaattaagaggaacactc
ctccattgttggtgggattgcaagcttgtacaaccactctggaaatcagt
ctggtggttgctcagaaaattggaaatactactaccggagtatctcgcaa
tacctctcctgggcatatatccagaagatgtcccaacgggtaagaaggac
acatgctccactatgttcatagcagccttatttataatagccagaagctg
gaaagaacccagatgcccctcaacagaggaatggatacaaaaaatgtggt
acatttacacaatggagtactactcagctattaaaaagaatgaatttgtg
aaattcctaggcaaatagttggacctggagggcatcatcctgagtgaggt
aacacaatcacaaaagaactcaaatgatatgtactcactgataagtggat
attaacccagaaacttagtatagtgagatataaggtacaatttgcaaaac
acatgaaactgaagaagaacgaagaccaaagtgtggacactttgcccctt
cttagaattggaaacaatcacccatggaaggagttacagagacaaagttt
ggagctgagacaaaaggttggaccatctagagactgccatatccagggat
ccatcccataattagcctccaaacgatgacaccattgcatacactagcaa
gcgtttgttgcaaggaccgtgatatagctgtctcttgtgagactatgccg
gggcctagcaaacacagaagtggttgctcacagtcaactattggatcgat
cacagggcccccaatggaggagctagaaaaagtatccaaggagctaaaga
gaatctgcaccctgtagtgcacattatgaactaaccagtatccggagctc
tgactctagctgcatattgtatcaaaggatgctagttcgccatcactgga
aaagagagccatggacagcaactttaattgccagtcaggcaacacaggtc
aaaattggaatggttgtgcataagggaaattagccgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143560479_143561697
seq2: B6Ng01-297B08.b_51_1256 (reverse)

seq1  GCACA-TTTTTTTATTAACATGCACAAAATAATTGGTGATATTGGAAAAA  49
      ||||| ||||||||| | ||||||| |||||||||  |||  || |||| 
seq2  GCACACTTTTTTTATGAGCATGCACCAAATAATTGTGGAT-CTGCAAAAC  49

seq1  GTGATCAATTTGATGAAGAGAAAAATATAAATACTCATTAACTCAACTTT  99
      |||||||||||||||||| ||||||||| |||   ||| |||||||||||
seq2  GTGATCAATTTGATGAAGGGAAAAATAT-AATCTCCATAAACTCAACTTT  98

seq1  TATGGTTGTAAGTTTTTTAGTTTTTAAATTAAAAAACCTCATCATTATAA  149
      ||||| ||||   ||||||| ||||||||   |||| ||||||| |||||
seq2  TATGG-TGTA--GTTTTTAG-TTTTAAAT---AAAAACTCATCA-TATAA  140

seq1  ATTTTTACTAC-AAAATAAATAAAAATTAAATGTGTAAAAGATAATAAAT  198
      ||||||||||| |||||||||||||||||||||||| |||||| ||||||
seq2  ATTTTTACTACAAAAATAAATAAAAATTAAATGTGT-AAAGAT-ATAAAT  188

seq1  TAAGACATAAGCAAAAGCAGAAAAATGCATTAAAATTAAATGCAACTTAG  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAT-AGCAAAAGCAGAAAAATGCATTAAAATTAAATGCAACTTAG  237

seq1  AAAGAGAAATAAATATAACACAGCATTTTGATGAGAACATTCTATGCTCT  298
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAT-AATAT-ACACAGCATTTTGATGAGAACATTCTATGCTCT  285

seq1  GTGTACATTTTTATTGATAATAATAAAACAGGGTCTTTATATGTTCAGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATTTTTATTGATAATAATAAAACAGGGTCTTTATATGTTCAGAT  335

seq1  TTACTAAATAAGAACTATTTTGACAAAACTTATTCTCTGATTACCCTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAATAAGAACTATTTTGACAAAACTTATTCTCTGATTACCCTTAT  385

seq1  AACAACAGTTACAATGCTATGGTCACAATTTTGATCAAAACCAAAAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGTTACAATGCTATGGTCACAATTTTGATCAAAACCAAAAAAAT  435

seq1  AAGAAACCCAAATTTGAAGCAACTAATAAGATTGGTAAACGTGTGATTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCCAAATTTGAAGCAACTAATAAGATTGGTAAACGTGTGATTAA  485

seq1  GACATGTAAAACCAGAATAAATGGCTAAAATTTGAATATTATAGTGTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTAAAACCAGAATAAATGGCTAAAATTTGAATATTATAGTGTAAA  535

seq1  TTATCTGGATTAAACATAATGAAGTCTGGATTTGACATATACAAACCAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGATTAAACATAATGAAGTCTGGATTTGACATATACAAACCAAC  585

seq1  ATATAAACAGATATGCATGAATATACAGTCTGCTATGCAATACTAAGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACAGATATGCATGAATATACAGTCTGCTATGCAATACTAAGTAA  635

seq1  GTGATTTATATTCATGAGTCTTTTGAATTGTTCAGCAGAACCCAATAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTATATTCATGAGTCTTTTGAATTGTTCAGCAGAACCCAATAAGT  685

seq1  GTTATTATATTTGCAGTACAGTGGTGGTCAGAGCAGTTCTATAAATAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATATTTGCAGTACAGTGGTGGTCAGAGCAGTTCTATAAATAGCT  735

seq1  GTTAGAAATGTCTTTTTAGTTTTATTTCAAATTGTTTTTTGAGATTAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATGTCTTTTTAGTTTTATTTCAAATTGTTTTTTGAGATTAATG  785

seq1  CCATTAATACTGCCAATAGAGAAAATAAGTAAAATGAAAAGCTGCTTTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATACTGCCAATAGAGAAAATAAGTAAAATGAAAAGCTGCTTTAT  835

seq1  TCACAAAAAGAAATAATGAATTGACAAGTTGATTGCTGGTGTTTTCAACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAAGAAATAATGAATTGACAAGTTGATTGCTGGTGTTTTCAACT  885

seq1  TTGAAAGAAAAGAGCTGGAATATTTCATAAAATTATTCACATTTCATCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAAAAGAGCTGGAATATTTCATAAAATTATTCACATTTCATCAA  935

seq1  ATAAACATTGAAAATACTGTATTGTCAATTTTTTGTTTATTGCTAGTAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTGAAAATACTGTATTGTCAATTTTTTGTTTATTGCTAGTAAT  985

seq1  ATTGATTGAAAAACAATATAAAATGTTTTCTACAGACAAGTTTTATGATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGAAAAACAATATAAAATGTTTTCTACAGACAAGTTTTATGATA  1035

seq1  AATTGAAACTAAGTTTTGAAAAATAATATATGAAGATATTCTAGCAATTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAACTAAGTTTTGAAAAATAATATATGAAGATATTCTAGCAATTT  1085

seq1  TATCATAAAGTATAGAACTTTCAATACAAATTATTTGAAATAAGAACTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAAAGTATAGAACTTTCAATACAAATTATTTGAAATAAGAACTCT  1135

seq1  TCCATGGCTAAATATGATGTCTTGATCCTTCAGTACTTAAACACAGAACT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCTAAATATGATGTCTTGATCCTTCAGTACTTAAACACAGAACT  1185

seq1  AAAGGAGAGTATATTGAATTC  1219
      |||||||||||||||||||||
seq2  AAAGGAGAGTATATTGAATTC  1206


| Home | SequenceCutter | Blast | Download |