BAC Information

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BAC

Clone NameB6Ng01-297G03
Chromosome1 (Build37)
Map Location 143,017,477 - 143,018,651
singlet/doubletsinglet
Overlap genenone
Upstream geneCfh, Kcnt2
Downstream geneEG226472, LOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297G03.bB6Ng01-297G03.g
ACCGA092752GA092753
length1,2051,170
definitionB6Ng01-297G03.b B6Ng01-297G03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgccagatatttttatattat
ttgtgactattgagaaggtgtgtttccctaaatttctttctcagcctgta
ttctttgtatagaagaaggccattgacttgtttgagttattttatatcag
ctacttcaccgaagctgttttatcagtttaggagttctctgtaagatttt
aaggtcacttatttactatctatcatcttgcaaaggaaatttgactccca
tccaattgatctgatcttgtgcaatgctggcaaacttcaagactatgtgt
aaagc

gaattctttacaatgagtctttcatgaaaacacataaaacaaattgaatc
aggtatttgtttaatttatccttaacccagtattttaagtgtaagtataa
aaatatcattttaaaaatctgtcatttctccagtgatttgaaatgtgaac
tctgtaatatttctgcatttttgttcttcatatttatgtacctgaaatat
tctgttctaaattttgtaattttaatcacattgatatattccatgacatt
gattcctcacttatacttccattcggttttatagctacacttctagatcc
attaaatttatttattttaaactggacttttctgattaaaattctgtatt
ttcttgaacttgtttgaatgcatgtatttgtatacattaactattactat
taaaatatgctaagctggataatgtaaagtaactgatatttgttatttta
ctcattttctgagtgtcttgagatcagtcctggctaatcttggatctcat
gaggttgtagttcagttgtatatatcagcaatcccaatacaagggctggt
ggcagatctctttcccactggctgttggctgtagccttctgtttccatca
agatgggtctcttgatagtgtcttataaaatacagcaggctggattacac
aaagaatgtaacccaagtaagagtggggtacagagctaaagtcacattat
ttcatataactttttaagattataatataattatatcatatttcctttcc
ttttctccctccaaaaccaccaataaaccccttcttgctctcttttaaat
ctatggccacgtttaaattgaattgttattacaagtattttttaatatgt
atataaaaatacaatcctaaatataatctgctcagtttagataatgtatg
tacacttttagggttgaacacttgatattagacaataagtgatgttggac
aagccaaatagcctccttggagaagaccattttcccattctcagcattaa
tgagtctttgtctattttttatctcagttctgggatcatatgaatttcta
tattcatatgactgctctagtatcacattttttaagaatatatagaatgt
gaatacatcggtgtgctcttatttattcgaggtctatcatggcatgtaga
gttgaaatacataacatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143017477_143018651
seq2: B6Ng01-297G03.g_66_1235

seq1  GAATTCTTTACAATGAGTCTTTCATGAAAACACATAAAACAAATTGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACAATGAGTCTTTCATGAAAACACATAAAACAAATTGAATC  50

seq1  AGGTATTTGTTTAATTTATCCTTAACCCAGTATTTTAAGTGTAAGTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTGTTTAATTTATCCTTAACCCAGTATTTTAAGTGTAAGTATAA  100

seq1  AAATATCATTTTAAAAATCTGTCATTTCTCCAGTGATTTGAAATGTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCATTTTAAAAATCTGTCATTTCTCCAGTGATTTGAAATGTGAAC  150

seq1  TCTGTAATATTTCTGCATTTTTGTTCTTCATATTTATGTACCTGAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATATTTCTGCATTTTTGTTCTTCATATTTATGTACCTGAAATAT  200

seq1  TCTGTTCTAAATTTTGTAATTTTAATCACATTGATATATTCCATGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTAAATTTTGTAATTTTAATCACATTGATATATTCCATGACATT  250

seq1  GATTCCTCACTTATACTTCCATTCGGTTTTATAGCTACACTTCTAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCACTTATACTTCCATTCGGTTTTATAGCTACACTTCTAGATCC  300

seq1  ATTAAATTTATTTATTTTAAACTGGACTTTTCTGATTAAAATTCTGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTATTTATTTTAAACTGGACTTTTCTGATTAAAATTCTGTATT  350

seq1  TTCTTGAACTTGTTTGAATGCATGTATTTGTATACATTAACTATTACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAACTTGTTTGAATGCATGTATTTGTATACATTAACTATTACTAT  400

seq1  TAAAATATGCTAAGCTGGATAATGTAAAGTAACTGATATTTGTTATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGCTAAGCTGGATAATGTAAAGTAACTGATATTTGTTATTTTA  450

seq1  CTCATTTTCTGAGTGTCTTGAGATCAGTCCTGGCTAATCTTGGATCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTCTGAGTGTCTTGAGATCAGTCCTGGCTAATCTTGGATCTCAT  500

seq1  GAGGTTGTAGTTCAGTTGTATATATCAGCAATCCCAATACAAGGGCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGTAGTTCAGTTGTATATATCAGCAATCCCAATACAAGGGCTGGT  550

seq1  GGCAGATCTCTTTCCCACTGGCTGTTGGCTGTAGCCTTCTGTTTCCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATCTCTTTCCCACTGGCTGTTGGCTGTAGCCTTCTGTTTCCATCA  600

seq1  AGATGGGTCTCTTGATAGTGTCTTATAAAATACAGCAGGCTGGATTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTCTCTTGATAGTGTCTTATAAAATACAGCAGGCTGGATTACAC  650

seq1  AAAGAATGTAACCCAAGTAAGAGTGGGGTACAGAGCTAAAGTCACATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGTAACCCAAGTAAGAGTGGGGTACAGAGCTAAAGTCACATTAT  700

seq1  TTCATATAACTTTTTAAGATTATAATATAATTATATCATATTTCCTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAACTTTTTAAGATTATAATATAATTATATCATATTTCCTTTCC  750

seq1  TTTTCTCCCTCCAAAACCACCAATAAACCCCTTCTTGCTCTCTTTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCTCCAAAACCACCAATAAACCCCTTCTTGCTCTCTTTTAAAT  800

seq1  CTATGGCCACGTTTAAATTGAATTGTTATTACAAGTATTTTTTAATATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCCACGTTTAAATTGAATTGTTATTACAAGTATTTTTTAATATGT  850

seq1  ATATAAAAATACAATCCTAAATATAATCTGCTCAGTTTAGATAATGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATACAATCCTAAATATAATCTGCTCAGTTTAGATAATGTATG  900

seq1  TACACTTTTAGGGTTGAACACTTGATATTAGACAAATAAGTGATGTTGGA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACACTTTTAGGGTTGAACACTTGATATTAGAC-AATAAGTGATGTTGGA  949

seq1  CAAGCCAAATAGCCTCCTTGGAGAAGACCATTTTCCCATTCTCAGCATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAATAGCCTCCTTGGAGAAGACCATTTTCCCATTCTCAGCATTA  999

seq1  ATGAGTTCTTTGTCTA-TTTTTATCTCAGGTTCTGGGATCATATGAATTT  1049
      ||||| |||||||||| ||||||||||| |||||||||||||||||||||
seq2  ATGAG-TCTTTGTCTATTTTTTATCTCA-GTTCTGGGATCATATGAATTT  1047

seq1  CTATATTCATATTGACCTGCCTCTTAGTATCACCATTTTTTAAAGAATAT  1099
      ||||||||||| ||| ||| ||| |||||||| |||||||| ||||||||
seq2  CTATATTCATA-TGA-CTG-CTC-TAGTATCA-CATTTTTT-AAGAATAT  1091

seq1  ATTAGAATGTGAATACCATC-GTGTGCTCTTATTTATTCAGAGTC-ATCA  1147
      | ||||||||||||| |||| ||||||||||||||||||   ||| ||||
seq2  A-TAGAATGTGAATA-CATCGGTGTGCTCTTATTTATTCGAGGTCTATCA  1139

seq1  TGGTATG--ATGTAGAAATACAT-ACATTTG  1175
      ||| |||    || ||||||||| |||||||
seq2  TGGCATGTAGAGTTGAAATACATAACATTTG  1170


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