BAC Information

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BAC

Clone NameB6Ng01-297P20
Chromosome1 (Build37)
Map Location 15,119,727 - 15,289,011
singlet/doubletdoublet
Overlap geneLOC100039959
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949
Downstream geneKcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297P20.bB6Ng01-297P20.g
ACCGA093213GA093214
length523761
definitionB6Ng01-297P20.b B6Ng01-297P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,119,727 - 15,120,253)(15,288,251 - 15,289,011)
sequence
tatataaagggactttaaatgatgttttaaaaaagaattaattaaaaaaa
attattcttttcttcaaataggaagatttgcctatatgataattgcagaa
actttaaacatccagttctgacgtgtgtgtgtgtgtgtgtgtgtgtcctt
gaactactaattttccaataactttaatatgtaagtgataaattactggc
ttcactgttctttggagctggcaatcctaaaattaaatatggtctgtcaa
tacaatgcattatgttaatgagatgaagagccatctgagccttcaatgtc
aaggtatcctttctgtggagatagcggttgtttggttgcagaaaaatcga
caccttttaaaatagttttggccacattagcttaatttaccactattatt
tttgtgttacagatcaaagacctgacataggagaaaatgcagttttatgc
ttatatttagtgctaacagcggtgtgtctgtgtgtgtgtgtgtctgtgtg
tgtgtgtgtgagtgtgtgtgtgt

gaattcaagagcctgacccagggttgcttttaaaacttcaaaatgcatat
gtgtacatgtgtatgtgtgcgtgtgtgtgaaccaaataaccaaatagttt
gcattttgttgttgttgttgttgttgttctctttgctactgaactaaact
gataaacgtgttttataaataagcacaggagaaaagaaatcaatatgtca
aagaaagggatcctgttagaggagacagtgacgtacttgtgtaactttag
aacttaggaagtgtgaatagaagagaagaggagaaggaaccacccctcct
ccaacaaacacaacctggtcagaacatctgggcttgagaaaacattcagg
gtcacgtgagtcagatacttaaaaagataacaccctgcatttgtatctac
attttgtgcatgttacagagtgaaggaaatgccatcaaaacagcaatttc
tatggttagaaataagaaccattgcatggagatcccttccataggaggta
ccttggagatcatctgagccaaagcaggcactgggttccagaaatggctg
ccacatccaagtgcagtaaaagaatgccagggttgttagtaaataacact
gcatttgaaacttaggttttctaattaatttatgctaatagtagtctagg
aattgtctggcctcagtgggaaaggaagtgcctagcctcacagagactcg
aactggtagagtacagggatactcaggagaagtgggtagggaaaggattg
tgggatggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15119727_15120253
seq2: B6Ng01-297P20.b_53_581

seq1  GAATTCTATATAAAGGGACTTTAAATGATGTTTTAAAAAAGAATTAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATAAAGGGACTTTAAATGATGTTTTAAAAAAGAATTAATTA  50

seq1  AAAAAAATTATTCTTTTCTTCAAATAGGAAGATTTGCCTATATGATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTATTCTTTTCTTCAAATAGGAAGATTTGCCTATATGATAATT  100

seq1  GCAGAAACTTTAAACATCCAGTTCTGAC--GTGTGTGTGTGTGTGTGTGT  148
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GCAGAAACTTTAAACATCCAGTTCTGACGTGTGTGTGTGTGTGTGTGTGT  150

seq1  GTCCTTGAACTACTAATTTTCCAATAACTTTAATATGTAAGTGATAAATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAACTACTAATTTTCCAATAACTTTAATATGTAAGTGATAAATT  200

seq1  ACTGGCTTCACTGTTCTTTGGAGCTGGCAATCCTAAAATTAAATATGGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTCACTGTTCTTTGGAGCTGGCAATCCTAAAATTAAATATGGTC  250

seq1  TGTCAATACAATGCATTATGTTAATGAGATGAAGAGCCATCTGAGCCTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATACAATGCATTATGTTAATGAGATGAAGAGCCATCTGAGCCTTC  300

seq1  AATGTCAAGGTATCCTTTCTGTGGAGATAGCGGTTGTTTGGTTGCAGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAAGGTATCCTTTCTGTGGAGATAGCGGTTGTTTGGTTGCAGAAA  350

seq1  AATCGACACCTTTTAAAATAGTTTTGGCCACATTAGCTTAATTTACCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGACACCTTTTAAAATAGTTTTGGCCACATTAGCTTAATTTACCACT  400

seq1  ATTATTTTTGTGTTACAGATCAAAGACCTGACATAGGAGAAAATGCAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTGTGTTACAGATCAAAGACCTGACATAGGAGAAAATGCAGTT  450

seq1  TTATGCTTATATTTAGTGCTAACAGCGGTGTGTCTGTGTGTGTGTGTGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTTATATTTAGTGCTAACAGCGGTGTGTCTGTGTGTGTGTGTGTC  500

seq1  TGTGTGTGTGTGTGTGAGTGTGTGTGTGT  527
      |||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGAGTGTGTGTGTGT  529


seq1: chr1_15288251_15289011
seq2: B6Ng01-297P20.g_69_829 (reverse)

seq1  ACCCCATCCCACAATCCTTTCCCTACCCACTTCTCCTGAGTATCCCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATCCCACAATCCTTTCCCTACCCACTTCTCCTGAGTATCCCTGTA  50

seq1  CTCTACCAGTTCGAGTCTCTGTGAGGCTAGGCACTTCCTTTCCCACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCAGTTCGAGTCTCTGTGAGGCTAGGCACTTCCTTTCCCACTGAG  100

seq1  GCCAGACAATTCCTAGACTACTATTAGCATAAATTAATTAGAAAACCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACAATTCCTAGACTACTATTAGCATAAATTAATTAGAAAACCTAA  150

seq1  GTTTCAAATGCAGTGTTATTTACTAACAACCCTGGCATTCTTTTACTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAATGCAGTGTTATTTACTAACAACCCTGGCATTCTTTTACTGCA  200

seq1  CTTGGATGTGGCAGCCATTTCTGGAACCCAGTGCCTGCTTTGGCTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGTGGCAGCCATTTCTGGAACCCAGTGCCTGCTTTGGCTCAGAT  250

seq1  GATCTCCAAGGTACCTCCTATGGAAGGGATCTCCATGCAATGGTTCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCAAGGTACCTCCTATGGAAGGGATCTCCATGCAATGGTTCTTAT  300

seq1  TTCTAACCATAGAAATTGCTGTTTTGATGGCATTTCCTTCACTCTGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCATAGAAATTGCTGTTTTGATGGCATTTCCTTCACTCTGTAAC  350

seq1  ATGCACAAAATGTAGATACAAATGCAGGGTGTTATCTTTTTAAGTATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAAATGTAGATACAAATGCAGGGTGTTATCTTTTTAAGTATCTG  400

seq1  ACTCACGTGACCCTGAATGTTTTCTCAAGCCCAGATGTTCTGACCAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGTGACCCTGAATGTTTTCTCAAGCCCAGATGTTCTGACCAGGTT  450

seq1  GTGTTTGTTGGAGGAGGGGTGGTTCCTTCTCCTCTTCTCTTCTATTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTTGGAGGAGGGGTGGTTCCTTCTCCTCTTCTCTTCTATTCACA  500

seq1  CTTCCTAAGTTCTAAAGTTACACAAGTACGTCACTGTCTCCTCTAACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAAGTTCTAAAGTTACACAAGTACGTCACTGTCTCCTCTAACAGG  550

seq1  ATCCCTTTCTTTGACATATTGATTTCTTTTCTCCTGTGCTTATTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCTTTGACATATTGATTTCTTTTCTCCTGTGCTTATTTATAAA  600

seq1  ACACGTTTATCAGTTTAGTTCAGTAGCAAAGAGAACAACAACAACAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTTATCAGTTTAGTTCAGTAGCAAAGAGAACAACAACAACAACAA  650

seq1  CAACAAAATGCAAACTATTTGGTTATTTGGTTCACACACACGCACACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATGCAAACTATTTGGTTATTTGGTTCACACACACGCACACATA  700

seq1  CACATGTACACATATGCATTTTGAAGTTTTAAAAGCAACCCTGGGTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTACACATATGCATTTTGAAGTTTTAAAAGCAACCCTGGGTCAGG  750

seq1  CTCTTGAATTC  761
      |||||||||||
seq2  CTCTTGAATTC  761


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