BAC Information

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BAC

Clone NameB6Ng01-298H13
Chromosome1 (Build37)
Map Location 50,733,891 - 50,816,317
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298H13.bB6Ng01-298H13.g
ACCGA093568GA093569
length1,1091,150
definitionB6Ng01-298H13.b B6Ng01-298H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,733,891 - 50,735,006)(50,815,155 - 50,816,317)
sequence
gaattcttacaatagaatttcacgaacaagttaaaatgcatggacaaatg
acacatttatcattctatacaattaggtacaaacaatgaatttaagaaca
gcaaaaggaatactgaatatttaaaattagaaacacataactcaattaaa
atcacattaaaaacaataatagaaataagcatgggtctcttactacatga
atcacagtttcagtgtctttgaaagcaggaggaacatacaaagatttaaa
attctatctatattgatattgtctttatttaaaatgtgaaacaaatgaag
aaagtatttttaaaacgtctaaagtgattgattgattgataggcatgtgt
ctttaattaatatctatataagcatatgaaaataatattttattatttaa
acagtataaagaaaagataactggtaagaaggctcagttgtaataggaac
aacaatgaggaccagaacctgaatatcaggagttcatgtagatgccaggt
aggcataccataatgcctgtaatgttagggcttagaagctggagacaaga
tccccaaagcatgttgactggctgtaagtgtgagctctgggttaaaccag
aggctctgcctcaatgaatataaggcagagtgatattgaaagtctatcag
catcagtctcatgcctccaatgcacataagcacatctgtgcccatacatg
catgcaaagtgtgcatagaatatcacatatcacatattcatgaaaaatga
aagtaagtttagacctctgatgtaagtaaaattggttgagatactttctc
tcctgtctctaaaatattctaaagtaatggtgtcacagaacttgtgggag
tagccaaccattacctgatttcgctcaaggcccattctataagattgaac
ccataccagatagttgttgaataactaagaagtagtcttgataatccaaa
gattcaggataaaaccaaatataatttttataaataaataaataaataaa
taaataaataaatacaataaatgattcctagcacattttactattattca
tagatcagtaccctgcagtcatcatcagacagtttcctcagacgtatttg
ggagcatat

gaattcttggtatgatttatggaataaatagagagcaagtatacaagtca
gtatgtcattgaatgacgtaaattttaatgtgtatgtgtgttttacctgc
atgtatgtctgtgtatcacatgtaaacctggtgttcaaagacatcagaaa
tggtaatgtgatacactactactgaagttatagatggttgtgagttgcca
tatgggtgctgggaatcaaatctaggtcgtctggaatattagctagtgct
cttagtcactgaatcctttctctagacttaactaagcagtggaatttcag
tattactaaaaaattcacagaacaacttaaatatataatacaatatcact
tcttataaataggaaaatataaatataatatgaaggtaattactactaat
ctggctttttacatgtgtacaccatatgtgcagcatttataaaatctaag
ttgatattcagaattaacaataaatgcatttgataaaataaattcttaaa
agatttttaaataagccataaaagtaaattttaaatgtatactttcatta
caagtgagtattcacaaatattggggtattagagttatatcccaggcatg
aaaatatattatatcaatgaaaagataaacaaaaatgaatgctagatgaa
gaagcaatatgtgaaagcttgggaaatggcactaaatggatataggaaga
ttgagacattcccagcatacattcctagtggggacattattgccctcaag
aggccaaaattgatttgcaataagacgtgagaaaagtaaaatgtctctga
tctttcaatgatttatggtccttcaaagttgaactataactgatacgtct
cttgttaattaatatttaattcttttaattaagtaggtaatatattttaa
ctagttaaattaaagtggattgtccagtaggaaatgataatgaaaacaga
ttgagaaatagagttaagatgcaaaagaaatcttgaaaaaaaatgccaga
ctatgctttcccatttgttacaatctagtagtatgatcaggcaaaaacat
ttatttagcctatctgaagatgaaacatcgatatgatgtaactggtttat
tacctaaggaatgtcagtcattaggttctgtattttcttacaagcctagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50733891_50735006
seq2: B6Ng01-298H13.b_46_1154

seq1  GAATTCTTACAATAGAATTTCACGAACAAGTTAAAATGCATGGACAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAATAGAATTTCACGAACAAGTTAAAATGCATGGACAAATG  50

seq1  ACACATTTATCATTCTATACAATTAGGTACAAACAATGAATTTAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTATCATTCTATACAATTAGGTACAAACAATGAATTTAAGAACA  100

seq1  GCAAAAGGAATACTGAATATTTAAAATTAGAAACACATAACTCAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGAATACTGAATATTTAAAATTAGAAACACATAACTCAATTAAA  150

seq1  ATCACATTAAAAACAATAATAGAAATAAGCATGGGTCTCTTACTACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTAAAAACAATAATAGAAATAAGCATGGGTCTCTTACTACATGA  200

seq1  ATCACAGTTTCAGTGTCTTTGAAAGCAGGAGGAACATACAAAGATTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGTTTCAGTGTCTTTGAAAGCAGGAGGAACATACAAAGATTTAAA  250

seq1  ATTCTATCTATATTGATATTGTCTTTATTTAAAATGTGAAACAAATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCTATATTGATATTGTCTTTATTTAAAATGTGAAACAAATGAAG  300

seq1  AAAGTATTTTTAAAACGTCTAAAGTGATTGATTGATTGATAGGCATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTTTAAAACGTCTAAAGTGATTGATTGATTGATAGGCATGTGT  350

seq1  CTTTAATTAATATCTATATAAGCATATGAAAATAATATTTTATTATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTAATATCTATATAAGCATATGAAAATAATATTTTATTATTTAA  400

seq1  ACAGTATAAAGAAAAGATAACTGGTAAGAAGGCTCAGTTGTAATAGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATAAAGAAAAGATAACTGGTAAGAAGGCTCAGTTGTAATAGGAAC  450

seq1  AACAATGAGGACCAGAACCTGAATATCAGGAGTTCATGTAGATGCCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAGGACCAGAACCTGAATATCAGGAGTTCATGTAGATGCCAGGT  500

seq1  AGGCATACCATAATGCCTGTAATGTTAGGGCTTAGAAGCTGGAGACAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATACCATAATGCCTGTAATGTTAGGGCTTAGAAGCTGGAGACAAGA  550

seq1  TCCCCAAAGCATGTTGACTGGCTGTAAGTGTGAGCTCTGGGTTAAACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAGCATGTTGACTGGCTGTAAGTGTGAGCTCTGGGTTAAACCAG  600

seq1  AGGCTCTGCCTCAATGAATATAAGGCAGAGTGATATTGAAAGTCTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGCCTCAATGAATATAAGGCAGAGTGATATTGAAAGTCTATCAG  650

seq1  CATCAGTCTCATGCCTCCAATGCACATAAGCACATCTGTGCCCATACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCTCATGCCTCCAATGCACATAAGCACATCTGTGCCCATACATG  700

seq1  CATGCAAAGTGTGCATAGAATATCACATATCACATATTCATGAAAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAGTGTGCATAGAATATCACATATCACATATTCATGAAAAATGA  750

seq1  AAGTAAGTTTAGACCTCTGATGTAAGTAAAATTGGTTGAGATACTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTTTAGACCTCTGATGTAAGTAAAATTGGTTGAGATACTTTCTC  800

seq1  TCCTGTCTCTAAAATATTCTAAAGTAATGGTGTCACAGAACTTGTGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCTAAAATATTCTAAAGTAATGGTGTCACAGAACTTGTGGGAG  850

seq1  TAGCCAACCATTACCTGATTTCGCTCAAGGCCCATTCTATAAGATTGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAACCATTACCTGATTTCGCTCAAGGCCCATTCTATAAGATTGAAC  900

seq1  CCATACCAGATAGTTGTTGAATAACTAAGAAAGTAGTCTTGATAATCCAA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCATACCAGATAGTTGTTGAATAACTAAG-AAGTAGTCTTGATAATCCAA  949

seq1  AGATTCAGGATAAAACCAAATATAATTTTTATAAATAAATAAATAAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGGATAAAACCAAATATAATTTTTATAAATAAATAAATAAATAA  999

seq1  ATAAATAAATAAATACAAATAAAATGATTCCTAGCAACATTTTACTA-TA  1049
      ||||||||||||||||||   |||||||||||||| ||||||||||| ||
seq2  ATAAATAAATAAATACAA--TAAATGATTCCTAGC-ACATTTTACTATTA  1046

seq1  TTCATAGATCAGTACCCTGCCAAGTCATCATCAGACAAGTTTCCTCAGAC  1099
      ||||||||||||||||||||  |||||||||||||| |||||||||||||
seq2  TTCATAGATCAGTACCCTGC--AGTCATCATCAGAC-AGTTTCCTCAGAC  1093

seq1  AGTATTTGGGAGCATAT  1116
       ||||||||||||||||
seq2  -GTATTTGGGAGCATAT  1109


seq1: chr1_50815155_50816317
seq2: B6Ng01-298H13.g_67_1216 (reverse)

seq1  CCTA-GCTTGTAGGAAAATACAGAA-CTAATGGACTGACTATTCCCTA-G  47
      |||| ||||||| |||||||||||| ||||| ||||||| ||||| || |
seq2  CCTAGGCTTGTAAGAAAATACAGAACCTAAT-GACTGAC-ATTCCTTAGG  48

seq1  TAATAAACACAG-TACATTCATATCGATGTTTCATCTTTCAAGGATA-GC  95
      |||||||| ||| |||| |||||||||||||||||| ||||  |||| ||
seq2  TAATAAAC-CAGTTACA-TCATATCGATGTTTCATC-TTCA--GATAGGC  93

seq1  TAAATAAATGTTTTTGCCTTGAATTCATTACTACTAGATTTGTAACAAAT  145
      |||||||||||||||||| |||  ||| |||||||||| |||||||||||
seq2  TAAATAAATGTTTTTGCC-TGA--TCA-TACTACTAGA-TTGTAACAAAT  138

seq1  GGGAAAGCATAGTTCTGGCATTTTTTTTTCAAGATTTCTTTTGCATCTTT  195
      |||||||||||| ||||||| |||||||||||||||||||||||||| ||
seq2  GGGAAAGCATAG-TCTGGCA-TTTTTTTTCAAGATTTCTTTTGCATC-TT  185

seq1  AACTCTTATTTCTCAATCTGTTTTCATTATCATTTTCCTACTGGGACAAT  245
      ||||| |||||||||||||||||||||||||| ||||||||| |||||||
seq2  AACTC-TATTTCTCAATCTGTTTTCATTATCA-TTTCCTACT-GGACAAT  232

seq1  CCACTTTAATTTAACTAGTTAAAATATATTACCTACTTAATTAAAAGAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTAATTTAACTAGTTAAAATATATTACCTACTTAATTAAAAGAAT  282

seq1  TAAATATTAATTAACAAGAGACGTATCAGTTATAGTTCAACTTTGAAGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAATTAACAAGAGACGTATCAGTTATAGTTCAACTTTGAAGGA  332

seq1  CCATAAATCATTGAAAGATCAGAGACATTTTACTTTTCTCACGTCTTATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATCATTGAAAGATCAGAGACATTTTACTTTTCTCACGTCTTATT  382

seq1  GCAAATCAATTTTGGCCTCTTGAGGGCAATAATGTCCCCACTAGGAATGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAATTTTGGCCTCTTGAGGGCAATAATGTCCCCACTAGGAATGT  432

seq1  ATGCTGGGAATGTCTCAATCTTCCTATATCCATTTAGTGCCATTTCCCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGAATGTCTCAATCTTCCTATATCCATTTAGTGCCATTTCCCAA  482

seq1  GCTTTCACATATTGCTTCTTCATCTAGCATTCATTTTTGTTTATCTTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACATATTGCTTCTTCATCTAGCATTCATTTTTGTTTATCTTTTC  532

seq1  ATTGATATAATATATTTTCATGCCTGGGATATAACTCTAATACCCCAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATAATATATTTTCATGCCTGGGATATAACTCTAATACCCCAATA  582

seq1  TTTGTGAATACTCACTTGTAATGAAAGTATACATTTAAAATTTACTTTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATACTCACTTGTAATGAAAGTATACATTTAAAATTTACTTTTA  632

seq1  TGGCTTATTTAAAAATCTTTTAAGAATTTATTTTATCAAATGCATTTATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATTTAAAAATCTTTTAAGAATTTATTTTATCAAATGCATTTATT  682

seq1  GTTAATTCTGAATATCAACTTAGATTTTATAAATGCTGCACATATGGTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTCTGAATATCAACTTAGATTTTATAAATGCTGCACATATGGTGT  732

seq1  ACACATGTAAAAAGCCAGATTAGTAGTAATTACCTTCATATTATATTTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTAAAAAGCCAGATTAGTAGTAATTACCTTCATATTATATTTAT  782

seq1  ATTTTCCTATTTATAAGAAGTGATATTGTATTATATATTTAAGTTGTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTATTTATAAGAAGTGATATTGTATTATATATTTAAGTTGTTCT  832

seq1  GTGAATTTTTTAGTAATACTGAAATTCCACTGCTTAGTTAAGTCTAGAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTTTTAGTAATACTGAAATTCCACTGCTTAGTTAAGTCTAGAGA  882

seq1  AAGGATTCAGTGACTAAGAGCACTAGCTAATATTCCAGACGACCTAGATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTCAGTGACTAAGAGCACTAGCTAATATTCCAGACGACCTAGATT  932

seq1  TGATTCCCAGCACCCATATGGCAACTCACAACCATCTATAACTTCAGTAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCAGCACCCATATGGCAACTCACAACCATCTATAACTTCAGTAG  982

seq1  TAGTGTATCACATTACCATTTCTGATGTCTTTGAACACCAGGTTTACATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATCACATTACCATTTCTGATGTCTTTGAACACCAGGTTTACATG  1032

seq1  TGATACACAGACATACATGCAGGTAAAACACACATACACATTAAAATTTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACAGACATACATGCAGGTAAAACACACATACACATTAAAATTTA  1082

seq1  CGTCATTCAATGACATACTGACTTGTATACTTGCTCTCTATTTATTCCAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATTCAATGACATACTGACTTGTATACTTGCTCTCTATTTATTCCAT  1132

seq1  AAATCATACCAAGAATTC  1163
      ||||||||||||||||||
seq2  AAATCATACCAAGAATTC  1150


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