BAC Information

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BAC

Clone NameB6Ng01-298J02
Chromosome1 (Build37)
Map Location 49,000,978 - 49,111,260
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
Downstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-298J02.bB6Ng01-298J02.g
ACCGA093640GA093641
length1,174939
definitionB6Ng01-298J02.b B6Ng01-298J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,000,978 - 49,002,166)(49,110,686 - 49,111,260)
sequence
gaattcagatcatggagctggtctgtgctgaggagagttgagtgtgagtt
gggaaatgtagctgaagcaaagcaaggaagcaaagaaggaaaagagagcg
ggccataaggtttactgtggaaatatgtgtcaactgtagactgagactcc
tttattggcaattttattttcctaattcatccaacatgttttgcttcatt
ggttcaaacaaacattaattgcttaaaaaaatgtttaagcaaaggaagta
tggaatgagtgatccttggttctttgcttttgttgttttgctacgtttat
tcttatttctgaacaattatgcaaaggtgccattatttataataataaat
atttcattaaatgtggcattttcaggtagtgattcaaaaatattatataa
cctttacattttatgaattatctaccagagttcacccagtagatttctgc
taatagcttggttgtatagaatggctaaatagaatcctccatacttgatg
tcacactgggaagtcaggaaggttgttcctggcaaggctcttttccattt
ccttgtagtgtcattgcctctatgaacagatttcaatcagaagaatctga
aatattttggaggacaatttccacagtaaaaaggaacagggttttattaa
acaaaagaataaagaaccaatttgttcaaaacagcctttaaataattcag
gtaaacgaaaaggaaaagctctgtacttggaagagaattcatggaatact
tactagacattttttatttgccaaactctatgattagtcagaaaatatcc
ccattttaccatatgtgcagatggtgattattgaaaagtcatattagttt
ataagtcaaaactttggtaggacttaactgcaatgtgctacacatttttt
ctaattcttcaattatgaagtaagaaccataatcttgtatcatatataat
ttgtcttattttatgaattcctacttgtaattaaagcatgtaccagagat
atttaacaaattagcgcattcacatggtgggttatatttacataaaagtg
agacactgacttacatgacactaatgtgatctataaacatgtttttttgc
acacatatcagttcaaaagtcttatcgaattatattactacaggctaagt
tgactcttgtattactaactctca

gaattcatttacaaatacaatgttattcagagttactttacattttgtaa
tcattttatttttttcctttaaattttttgttcctgtctgaaagaactgc
agggatggaaatggagaggagcgtaggagaagaaggtccagcagtgggcc
caaaatgggatgcagatcatggggaggccccaagccctgacacttattac
tgaagcaatggagtacacataaaaaggaacctatcgtgattgccacccaa
aagatccaacaagcacctgaaagagtcagatgcagatatttgcaaacaac
caatggtcaaaaagtgataagccctgtggttgaattaggggaaaactgga
agatactgagtaggaaagcaacccagtggtggaccagcattcccaattaa
cctgggccacgagatctctcatatactaggccaccaaccaagcagcatat
tgtaggtgatatgagaccccaacacatacatagcagaggactgccgctcc
gggttcagtcagagaagatacacctaaccctcaagggattggaggccctg
tggagtttataggtatgatggggtaagggctgggtaatggggacatcctc
atggagactagagggaagggaggagatgtgacatatggaacattcggagg
gtggaccaggaggggaataaaatctgggagtataaataaataaatgaatg
aatgaataaataaataaatacatacttaataaaataattaaacttcagct
gcattttgttaatttgtgtttgaggttccttctttttacattgagatagc
cagtgggtcttatctgaccattttttaaaatgatgtgacttttaacgtat
gattttcattttggaactttattctttttttatttttttaggggatagat
tattcttttagttcttaatgtctctccataaacccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49000978_49002166
seq2: B6Ng01-298J02.b_47_1220

seq1  GAATTCAGATCATGGAGCTGGTCTGTGCTGAGGAGAGTTGAGTGTGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCATGGAGCTGGTCTGTGCTGAGGAGAGTTGAGTGTGAGTT  50

seq1  GGGAAATGTAGCTGAAGCAAAGCAAGGAAGCAAAGAAGGAAAAGAGAGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGTAGCTGAAGCAAAGCAAGGAAGCAAAGAAGGAAAAGAGAGCG  100

seq1  GGCCATAAGGTTTACTGTGGAAATATGTGTCAACTGTAGACTGAGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAGGTTTACTGTGGAAATATGTGTCAACTGTAGACTGAGACTCC  150

seq1  TTTATTGGCAATTTTATTTTCCTAATTCATCCAACATGTTTTGCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGCAATTTTATTTTCCTAATTCATCCAACATGTTTTGCTTCATT  200

seq1  GGTTCAAACAAACATTAATTGCTTAAAAAAATGTTTAAGCAAAGGAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAACAAACATTAATTGCTTAAAAAAATGTTTAAGCAAAGGAAGTA  250

seq1  TGGAATGAGTGATCCTTGGTTCTTTGCTTTTGTTGTTTTGCTACGTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAGTGATCCTTGGTTCTTTGCTTTTGTTGTTTTGCTACGTTTAT  300

seq1  TCTTATTTCTGAACAATTATGCAAAGGTGCCATTATTTATAATAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTCTGAACAATTATGCAAAGGTGCCATTATTTATAATAATAAAT  350

seq1  ATTTCATTAAATGTGGCATTTTCAGGTAGTGATTCAAAAATATTATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTAAATGTGGCATTTTCAGGTAGTGATTCAAAAATATTATATAA  400

seq1  CCTTTACATTTTATGAATTATCTACCAGAGTTCACCCAGTAGATTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACATTTTATGAATTATCTACCAGAGTTCACCCAGTAGATTTCTGC  450

seq1  TAATAGCTTGGTTGTATAGAATGGCTAAATAGAATCCTCCATACTTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTTGGTTGTATAGAATGGCTAAATAGAATCCTCCATACTTGATG  500

seq1  TCACACTGGGAAGTCAGGAAGGTTGTTCCTGGCAAGGCTCTTTTCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGGGAAGTCAGGAAGGTTGTTCCTGGCAAGGCTCTTTTCCATTT  550

seq1  CCTTGTAGTGTCATTGCCTCTATGAACAGATTTCAATCAGAAGAATCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAGTGTCATTGCCTCTATGAACAGATTTCAATCAGAAGAATCTGA  600

seq1  AATATTTTGGAGGACAATTTCCACAGTAAAAAGGAACAGGGTTTTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGGAGGACAATTTCCACAGTAAAAAGGAACAGGGTTTTATTAA  650

seq1  ACAAAAGAATAAAGAACCAATTTGTTCAAAACAGCCTTTAAATAATTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAATAAAGAACCAATTTGTTCAAAACAGCCTTTAAATAATTCAG  700

seq1  GTAAACGAAAAGGAAAAGCTCTGTACTTGGAAGAGAATTCATGGAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACGAAAAGGAAAAGCTCTGTACTTGGAAGAGAATTCATGGAATACT  750

seq1  TACTAGACATTTTTTATTTGCCAAACTCTATGATTAGTCAGAAAATATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGACATTTTTTATTTGCCAAACTCTATGATTAGTCAGAAAATATCC  800

seq1  CCATTTTACCATATGTGCAGATGGTGATTATTGAAAAGTCATATTAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTACCATATGTGCAGATGGTGATTATTGAAAAGTCATATTAGTTT  850

seq1  ATAAGTCAAAACTTTGGTAGGACTTAACTGCAATGTGCTACACATTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCAAAACTTTGGTAGGACTTAACTGCAATGTGCTACACATTTTTT  900

seq1  CTAATTCTTCAATTATGAAGTAAGAACCATAATCTTGTATCATATATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTTCAATTATGAAGTAAGAACCATAATCTTGTATCATATATAAT  950

seq1  TTGTCTTATTTTATGAATTCCTACTTGTAATTAAAGCATGTACCAGAGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATTTTATGAATTCCTACTTGTAATTAAAGCATGTACCAGAGAT  1000

seq1  ATTTAACAAATTAAGCGCCATTCACATGGTTGGGTTATATTTACATAAAA  1050
      |||||||||||| |||| ||||||||||| ||||||||||||||||||||
seq2  ATTTAACAAATT-AGCG-CATTCACATGG-TGGGTTATATTTACATAAAA  1047

seq1  GTTGAGACACTGAACTTTACAATTGACACT-ATGTGATCTATAAACATGT  1099
      | |||||||||||   |||||  ||||||| |||||||||||||||||||
seq2  G-TGAGACACTGA--CTTACA--TGACACTAATGTGATCTATAAACATGT  1092

seq1  TTTTTTGCACACCATATTAATTTAAAAAGTC-TATCAAAATTTAATAATT  1148
      ||||||||||| |||| | | || ||||||| |||| || | ||     |
seq2  TTTTTTGCACA-CATA-TCAGTTCAAAAGTCTTATCGAATTATA-----T  1135

seq1  TACTACAGGCTATAGTTTGACTCTTGGATTTACT-ACTCTCA  1189
      |||||||||||| || |||||||||| | ||||| |||||||
seq2  TACTACAGGCTA-AG-TTGACTCTTGTA-TTACTAACTCTCA  1174


seq1: chr1_49110686_49111260
seq2: B6Ng01-298J02.g_69_643 (reverse)

seq1  TACCCCATCATACCTATAAACTCCACAGGGCCTCCAATCCCTTGAGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCATCATACCTATAAACTCCACAGGGCCTCCAATCCCTTGAGGGTT  50

seq1  AGGTGTATCTTCTCTGACTGAACCCGGAGCGGCAGTCCTCTGCTATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATCTTCTCTGACTGAACCCGGAGCGGCAGTCCTCTGCTATGTAT  100

seq1  GTGTTGGGGTCTCATATCACCTACAATATGCTGCTTGGTTGGTGGCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGGTCTCATATCACCTACAATATGCTGCTTGGTTGGTGGCCTAG  150

seq1  TATATGAGAGATCTCGTGGCCCAGGTTAATTGGGAATGCTGGTCCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGAGATCTCGTGGCCCAGGTTAATTGGGAATGCTGGTCCACCAC  200

seq1  TGGGTTGCTTTCCTACTCAGTATCTTCCAGTTTTCCCCTAATTCAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGCTTTCCTACTCAGTATCTTCCAGTTTTCCCCTAATTCAACCAC  250

seq1  AGGGCTTATCACTTTTTGACCATTGGTTGTTTGCAAATATCTGCATCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTATCACTTTTTGACCATTGGTTGTTTGCAAATATCTGCATCTGA  300

seq1  CTCTTTCAGGTGCTTGTTGGATCTTTTGGGTGGCAATCACGATAGGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAGGTGCTTGTTGGATCTTTTGGGTGGCAATCACGATAGGTTCC  350

seq1  TTTTTATGTGTACTCCATTGCTTCAGTAATAAGTGTCAGGGCTTGGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTGTACTCCATTGCTTCAGTAATAAGTGTCAGGGCTTGGGGCC  400

seq1  TCCCCATGATCTGCATCCCATTTTGGGCCCACTGCTGGACCTTCTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGATCTGCATCCCATTTTGGGCCCACTGCTGGACCTTCTTCTCC  450

seq1  TACGCTCCTCTCCATTTCCATCCCTGCAGTTCTTTCAGACAGGAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTCCTCTCCATTTCCATCCCTGCAGTTCTTTCAGACAGGAACAAAA  500

seq1  AATTTAAAGGAAAAAAATAAAATGATTACAAAATGTAAAGTAACTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGGAAAAAAATAAAATGATTACAAAATGTAAAGTAACTCTGAA  550

seq1  TAACATTGTATTTGTAAATGAATTC  575
      |||||||||||||||||||||||||
seq2  TAACATTGTATTTGTAAATGAATTC  575


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