BAC Information

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BAC

Clone NameB6Ng01-299D11
Chromosome1 (Build37)
Map Location 52,888,042 - 53,032,973
singlet/doubletdoublet
Overlap geneHibch, 1700019D03Rik
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1
Downstream geneGdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299D11.bB6Ng01-299D11.g
ACCGA094118GA094119
length1,033258
definitionB6Ng01-299D11.b B6Ng01-299D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,888,042 - 52,888,936)(53,032,716 - 53,032,973)
sequence
gaattcttttttatatattgtgctttgaaatgagttatctttagttttgt
ttcagaaatgtatacaacttgttttgctattttgtggtttcaacataaaa
ctaatttaatagaaaataatgtatttatttcttaaggattaaaaataaaa
catttaaacgcttccttaaaatgtctatatgctgactcaaattcttttcc
taaacgacaccaatggtgtctcttccagaccgcctgccaagggatcactc
tagaaaaaacttaaatcaaggatgagagtggatgggcaatggcaaacgag
tggcccctcctgcaatgattcttctgacttttaaaattatcaaaaccctt
tcctttgtgatctaaagctgtttcttatgcttttcctgaggaaaaaaatg
tgactttgggaatatgaaagtctatatgaaagcatagtttatattaagcc
tataaatcacacatttactgacaataagtcaaaaatattttaaaataaca
ctttaacaaaacaaaacataaataacaaaaaaggcttttgaataaataag
atgttacaattttgacagatgaatgcaaatttgcatactaataagatgaa
tgtggttgtttatttctatagaaaaattaaatcttagctaaatttttgat
cgcgtaagacacagcatatttgatgatttttcagaattcaccaatattct
gattctctaatcagcaaaactgagaatgctgttttacataagtagaaaat
aagatgacagaagcatgtttcagaattactgaaaatcctcttctcattgc
aggtcattgaaacgaattaaaaaatctgtttaaaggctgttttatgaaac
tcaaggtggcaattcaaacagtgatttagaaaaatcaagcattcctagca
atacacagatgtactaagttgttactttcatgctgagaaataatggtaga
aaaatagttgaaatattttttccataattaaactattatatttttgtaag
aacagaacatttgtatgcacagcaagaacacta
tgtgtatctcattagaagctccaatttcaagtgcagaaaagactttgctt
gaatttttacagtactgaaataatttagatgctggagacaagtgtattgg
gaatgaagaccccttgatccttgggttttgtttttacagtcagccattct
caaataatcttagttgtgtcaaagattctaatttgttcctagtattttac
cttatgattgttggggccatgatgaagagatgagagacaggtgtgtgggt
gggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52888042_52888936
seq2: B6Ng01-299D11.b_46_940

seq1  GAATTCTTTTTTATATATTGTGCTTTGAAATGAGTTATCTTTAGTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTATATATTGTGCTTTGAAATGAGTTATCTTTAGTTTTGT  50

seq1  TTCAGAAATGTATACAACTTGTTTTGCTATTTTGTGGTTTCAACATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATGTATACAACTTGTTTTGCTATTTTGTGGTTTCAACATAAAA  100

seq1  CTAATTTAATAGAAAATAATGTATTTATTTCTTAAGGATTAAAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAATAGAAAATAATGTATTTATTTCTTAAGGATTAAAAATAAAA  150

seq1  CATTTAAACGCTTCCTTAAAATGTCTATATGCTGACTCAAATTCTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACGCTTCCTTAAAATGTCTATATGCTGACTCAAATTCTTTTCC  200

seq1  TAAACGACACCAATGGTGTCTCTTCCAGACCGCCTGCCAAGGGATCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGACACCAATGGTGTCTCTTCCAGACCGCCTGCCAAGGGATCACTC  250

seq1  TAGAAAAAACTTAAATCAAGGATGAGAGTGGATGGGCAATGGCAAACGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAACTTAAATCAAGGATGAGAGTGGATGGGCAATGGCAAACGAG  300

seq1  TGGCCCCTCCTGCAATGATTCTTCTGACTTTTAAAATTATCAAAACCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTCCTGCAATGATTCTTCTGACTTTTAAAATTATCAAAACCCTT  350

seq1  TCCTTTGTGATCTAAAGCTGTTTCTTATGCTTTTCCTGAGGAAAAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGATCTAAAGCTGTTTCTTATGCTTTTCCTGAGGAAAAAAATG  400

seq1  TGACTTTGGGAATATGAAAGTCTATATGAAAGCATAGTTTATATTAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGGAATATGAAAGTCTATATGAAAGCATAGTTTATATTAAGCC  450

seq1  TATAAATCACACATTTACTGACAATAAGTCAAAAATATTTTAAAATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCACACATTTACTGACAATAAGTCAAAAATATTTTAAAATAACA  500

seq1  CTTTAACAAAACAAAACATAAATAACAAAAAAGGCTTTTGAATAAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACAAAACAAAACATAAATAACAAAAAAGGCTTTTGAATAAATAAG  550

seq1  ATGTTACAATTTTGACAGATGAATGCAAATTTGCATACTAATAAGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAATTTTGACAGATGAATGCAAATTTGCATACTAATAAGATGAA  600

seq1  TGTGGTTGTTTATTTCTATAGAAAAATTAAATCTTAGCTAAATTTTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTTTATTTCTATAGAAAAATTAAATCTTAGCTAAATTTTTGAT  650

seq1  CGCGTAAGACACAGCATATTTGATGATTTTTCAGAATTCACCAATATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTAAGACACAGCATATTTGATGATTTTTCAGAATTCACCAATATTCT  700

seq1  GATTCTCTAATCAGCAAAACTGAGAATGCTGTTTTACATAAGTAGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTAATCAGCAAAACTGAGAATGCTGTTTTACATAAGTAGAAAAT  750

seq1  AAGATGACAGAAGCATGTTTCAGAATTACTGAAAATCCTCTTCTCATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACAGAAGCATGTTTCAGAATTACTGAAAATCCTCTTCTCATTGC  800

seq1  AGGTCATTGAAACGAATTAAAAAATCTGTTTAAAGGCTGTTTTATGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTGAAACGAATTAAAAAATCTGTTTAAAGGCTGTTTTATGAAAC  850

seq1  TCAAGGTGGCAATTCAAACAGTGATTTAGAAAAATCAAGCATTCC  895
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGGCAATTCAAACAGTGATTTAGAAAAATCAAGCATTCC  895

seq1: chr1_53032716_53032973
seq2: B6Ng01-299D11.g_73_330 (reverse)

seq1  CCCCCCCCACCCACACACCTGTCTCTCATCTCTTCATCATGGCCCCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACCCACACACCTGTCTCTCATCTCTTCATCATGGCCCCAACA  50

seq1  ATCATAAGGTAAAATACTAGGAACAAATTAGAATCTTTGACACAACTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGGTAAAATACTAGGAACAAATTAGAATCTTTGACACAACTAAG  100

seq1  ATTATTTGAGAATGGCTGACTGTAAAAACAAAACCCAAGGATCAAGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGAGAATGGCTGACTGTAAAAACAAAACCCAAGGATCAAGGGGT  150

seq1  CTTCATTCCCAATACACTTGTCTCCAGCATCTAAATTATTTCAGTACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCCCAATACACTTGTCTCCAGCATCTAAATTATTTCAGTACTGT  200

seq1  AAAAATTCAAGCAAAGTCTTTTCTGCACTTGAAATTGGAGCTTCTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCAAGCAAAGTCTTTTCTGCACTTGAAATTGGAGCTTCTAATGA  250

seq1  GATACACA  258
      ||||||||
seq2  GATACACA  258