BAC Information

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BAC

Clone NameB6Ng01-299L16
Chromosome1 (Build37)
Map Location 194,800,796 - 194,946,708
singlet/doubletdoublet
Overlap geneSyt14, AA408296
Upstream gene3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677
Downstream geneIrf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299L16.bB6Ng01-299L16.g
ACCGA094488GA094489
length9041,149
definitionB6Ng01-299L16.b B6Ng01-299L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,800,796 - 194,801,700)(194,945,579 - 194,946,708)
sequence
gaattctgcactgttggaaacaatcattctcattacaaaaaaaaaaagat
ctccaaaacagtaacaatttcaaaaactttttaaaaaatatcaaagactt
taaattggtcatttttgtttttcctgtttttcttttcttttttttttaag
atttatttattttatgtatatgagtacagagtagctgttttcatgaacat
cagaggagggcatcagataccattacagatggttgtgagccaccatgtgg
ttgctgggaattgaactcaggacctctggaagagcagtcagtgctctaaa
ccactgagccatctccccagccctttcagtttttcaagacaggatttctc
tctgtagctctggctgtcttggaacttgttctgtagaccaggctggcctc
aaacttggagacttgcctgcctctgcatcctggggttaaatgtgtatgcc
atcatgtctggctaaattggtcataatctttaacaacaacaacaacaaaa
aaccccaaaatctttatatatatataatttttcagaagacaaatattcct
gaacaaaagcctgaagtaaaatgtttataagaaatctaaataaatattgt
aataaatgtccctttaagtattctaagttctaaatttatttaattttttt
attatcattacgtattttcctcaattacatttccaatgctatcccaaaag
tcccccacaccctccccccccccactcccctacccacccattcccatttt
ttggccctggcgttccctgtactggggcatataaagtttgcctgaccaat
gggcctctcttccagtgatggccgactaagccatctttgatacttatgca
gctagagtcaagagctctggggtacttggttaagttcataatgttgttcc
accg
gaattcttaccgggacctgttctaccctgagaggactgccctgaagaatg
gagaagaagtccgccatgtatactgcctgcatgccataaaccatgtcctc
aaagccaatgctcaggtgctggctaacaacagtaggcgccggagccagaa
acttggggtgggtgaagatgatgacttcagggaccaagggctcaccaggc
ctaaggtgagtggcagcaggagagctttgctgtcgagaaggccatgaggc
actgctgagtcgtgagtgtgttgacagccgactagttagtgaatcctcgg
tgagcagttgagtgagccaggcagtgcagggcagtgaaaggggcttcaga
tgctctcagggctgaaccccaagcacacataagcacctcaatgctgatga
tctcttcctggtgacttggctcactagaacccagtgaagttttctatccg
gtccctatatctatatgcagtaacttctatgaactcagattcctagaagg
ccctgctaaagtgaacagagaaaagagtagcagaggggggctagaatcag
gctttccaccaagtcacatatacagaaaccttcaaaccagagatctctgt
tttgttgtaagcttcctgctgcttaaagtaaaggttgtatttacttgtgc
gttctagtgtgacctctggcacatttgaagttctagtaggaaaggagatg
gatttaattctgtgcacatttttcatgatgctgaggaccaggccttgttc
tcacacttgcctcacctgtctctgcagaaggtcatgttttcagacttctg
ttgaattcaacaggattcacgggtggctgtgaatattaatgtggctctta
cactttgatagctgggggtgacaaagtgtggacactttacttagtgtcac
caccaggacagccatccagcctcttaaatttgggggtctggcatccaggg
cagttacttacttctttgaccagctgattgcatttctagttcggctacct
caatgcgtgtgtataacaatttggagactgtctatctctgtgtggtactc
taagatggagagtcagggtttattgatggaaatcctaatggtttgggcta
aggtcacggcccagtggagtcttggttatttgcacaggaataaatgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_194800796_194801700
seq2: B6Ng01-299L16.b_51_954

seq1  GAATTCTGCACTGTTGGAAACAATCATTCTCATTACAAAAAAAAAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTGTTGGAAACAATCATTCTCATTACAAAAAAAAAAAGAT  50

seq1  CTCCAAAACAGTAACAATTTCAAAAACTTTTTAAAAAATATCAAAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAACAGTAACAATTTCAAAAACTTTTTAAAAAATATCAAAGACTT  100

seq1  TAAATTGGTCATTTTTGTTTTTCCTGTTTTTCTTTTCTTTTTTTTTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGTCATTTTTGTTTTTCCTGTTTTTCTTTTCTTTTTTTTTTAAG  150

seq1  ATTTATTTATTTTATGTATATGAGTACAGAGTAGCTGTTTTCATGAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTTATGTATATGAGTACAGAGTAGCTGTTTTCATGAACAT  200

seq1  CAGAGGAGGGCATCAGATACCATTACAGATGGTTGTGAGCCACCATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGGGCATCAGATACCATTACAGATGGTTGTGAGCCACCATGTGG  250

seq1  TTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTAAA  300

seq1  CCACTGAGCCATCTCCCCAGCCCTTTCAGTTTTTCAAGACAGGATTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCCATCTCCCCAGCCCTTTCAGTTTTTCAAGACAGGATTTCTC  350

seq1  TCTGTAGCTCTGGCTGTCTTGGAACTTGTTCTGTAGACCAGGCTGGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCTCTGGCTGTCTTGGAACTTGTTCTGTAGACCAGGCTGGCCTC  400

seq1  AAACTTGGAGACTTGCCTGCCTCTGCATCCTGGGGTTAAATGTGTATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGAGACTTGCCTGCCTCTGCATCCTGGGGTTAAATGTGTATGCC  450

seq1  ATCATGTCTGGCTAAATTGGTCATAATCTTTAACAACAACAACAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCTGGCTAAATTGGTCATAATCTTTAACAACAACAACAACAAAA  500

seq1  AACCCCAAAATCTTTATATATATATAATTTTTCAGAAGACAAATATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAAATCTTTATATATATATAATTTTTCAGAAGACAAATATTCCT  550

seq1  GAACAAAAGCCTGAAGTAAAATGTTTATAAGAAATCTAAATAAATATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAAGCCTGAAGTAAAATGTTTATAAGAAATCTAAATAAATATTGT  600

seq1  AATAAATGTCCCTTTAAGTATTCTAAGTTCTAAATTTATTTAATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTCCCTTTAAGTATTCTAAGTTCTAAATTTATTTAATTTTTTT  650

seq1  ATTATCATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAG  700

seq1  TCCCCCACACCCTCCCCCCCCCCACTCCCCTACCCACCCATTCCCATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACACCCTCCCCCCCCCCACTCCCCTACCCACCCATTCCCATTTT  750

seq1  TTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCCTGACCAA  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGGCGTT-CCCTGTACTGGGGCATATAAAGTTTGCCTGACCAA  799

seq1  TGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATAT  850
      |||||||||| ||||||||||||||||||| |||||| |||||||| |||
seq2  TGGGCCTCTC-TTCCAGTGATGGCCGACTAAGCCATC-TTTGATACTTAT  847

seq1  GCAGCTAGAGTCAAGAGCTCTGGGGTAC-TGGTT-AGTTCATAATGTTGT  898
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  GCAGCTAGAGTCAAGAGCTCTGGGGTACTTGGTTAAGTTCATAATGTTGT  897

seq1  TCCACCG  905
      |||||||
seq2  TCCACCG  904

seq1: chr1_194945579_194946708
seq2: B6Ng01-299L16.g_67_1215 (reverse)

seq1  ACCCA-TTATTCTTGTGCAAATAAC--AGACT-CACTGG--CGTGACCCT  44
      ||||| |||||| ||||||||||||  ||||| ||||||  ||||||| |
seq2  ACCCATTTATTCCTGTGCAAATAACCAAGACTCCACTGGGCCGTGACCTT  50

seq1  AGCCC-AACCATTA-GATTCCAATC-ATAAA-CCTGACTCT-CATC-TAG  88
      ||||| |||||||| |||| | ||| ||||| ||||||||| |||| |||
seq2  AGCCCAAACCATTAGGATTTCCATCAATAAACCCTGACTCTCCATCTTAG  100

seq1  AGTA-CACACAGAGATAGACAGTCTC--AAATGTTATACACACGCATTTG  135
      |||| |||||||||||||||||||||  || ||||||||||||||| |||
seq2  AGTACCACACAGAGATAGACAGTCTCCAAATTGTTATACACACGCA-TTG  149

seq1  AGGTAGCCG-ACTAGAAATGCAATCAGCTGGTCAAAGAAGTAAGTAACTG  184
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCGAACTAGAAATGCAATCAGCTGGTCAAAGAAGTAAGTAACTG  199

seq1  CCCTGGATGCCAGACCCC--AATTTAAGAGGCTGGATGGCTGTCCTGGTG  232
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  CCCTGGATGCCAGACCCCCAAATTTAAGAGGCTGGATGGCTGTCCTGGTG  249

seq1  GTGACACTAAGT-AAGTGTCCACACTTTGTCA-CCCCAGCTATCAAAGTG  280
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  GTGACACTAAGTAAAGTGTCCACACTTTGTCACCCCCAGCTATCAAAGTG  299

seq1  TAAGAGCCACATTAATATTCACAGCCACCCCTGAATCCTGTTGAATTCAA  330
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAGAGCCACATTAATATTCACAGCCACCCGTGAATCCTGTTGAATTCAA  349

seq1  CAGAAGTCTGAAAACATGACCTTCTGCAGAGACAGGTGAGGCAAGTGTGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCTGAAAACATGACCTTCTGCAGAGACAGGTGAGGCAAGTGTGA  399

seq1  GAACAAGGCCTGGTCCTCAGCATCATGAAAAATGTGCACAGAATTAAATC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGGCCTGGTCCTCAGCATCATGAAAAATGTGCACAGAATTAAATC  449

seq1  CATCTCCTTTCCTACTAGAACTTCAAATGTGCCAGAGGTCACACTAGAAC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTTTCCTACTAGAACTTCAAATGTGCCAGAGGTCACACTAGAAC  499

seq1  GCACAAGTAAATACAACCTTTACTTTAAGCAGCAGGAAGCTTACAACAAA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGTAAATACAACCTTTACTTTAAGCAGCAGGAAGCTTACAACAAA  549

seq1  ACAGAGATCTCTGGTTTGAAGGTTTCTGTATATGTGACTTGGTGGAAAGC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCTCTGGTTTGAAGGTTTCTGTATATGTGACTTGGTGGAAAGC  599

seq1  CTGATTCTAGCCCCCCTCTGCTACTCTTTTCTCTGTTCACTTTAGCAGGG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTAGCCCCCCTCTGCTACTCTTTTCTCTGTTCACTTTAGCAGGG  649

seq1  CCTTCTAGGAATCTGAGTTCATAGAAGTTACTGCATATAGATATAGGGAC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGGAATCTGAGTTCATAGAAGTTACTGCATATAGATATAGGGAC  699

seq1  CGGATAGAAAACTTCACTGGGTTCTAGTGAGCCAAGTCACCAGGAAGAGA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATAGAAAACTTCACTGGGTTCTAGTGAGCCAAGTCACCAGGAAGAGA  749

seq1  TCATCAGCATTGAGGTGCTTATGTGTGCTTGGGGTTCAGCCCTGAGAGCA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCATTGAGGTGCTTATGTGTGCTTGGGGTTCAGCCCTGAGAGCA  799

seq1  TCTGAAGCCCCTTTCACTGCCCTGCACTGCCTGGCTCACTCAACTGCTCA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCCCCTTTCACTGCCCTGCACTGCCTGGCTCACTCAACTGCTCA  849

seq1  CCGAGGATTCACTAACTAGTCGGCTGTCAACACACTCACGACTCAGCAGT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGATTCACTAACTAGTCGGCTGTCAACACACTCACGACTCAGCAGT  899

seq1  GCCTCATGGCCTTCTCGACAGCAAAGCTCTCCTGCTGCCACTCACCTTAG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGGCCTTCTCGACAGCAAAGCTCTCCTGCTGCCACTCACCTTAG  949

seq1  GCCTGGTGAGCCCTTGGTCCCTGAAGTCATCATCTTCACCCACCCCAAGT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGAGCCCTTGGTCCCTGAAGTCATCATCTTCACCCACCCCAAGT  999

seq1  TTCTGGCTCCGGCGCCTACTGTTGTTAGCCAGCACCTGAGCATTGGCTTT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCCGGCGCCTACTGTTGTTAGCCAGCACCTGAGCATTGGCTTT  1049

seq1  GAGGACATGGTTTATGGCATGCAGGCAGTATACATGGCGGACTTCTTCTC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATGGTTTATGGCATGCAGGCAGTATACATGGCGGACTTCTTCTC  1099

seq1  CATTCTTCAGGGCAGTCCTCTCAGGGTAGAACAGGTCCCGGTAAGAATTC  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCAGGGCAGTCCTCTCAGGGTAGAACAGGTCCCGGTAAGAATTC  1149