MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-301G16
Chromosome	1 (Build37)
Map Location	152,598,818 - 152,599,795
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
Downstream gene	EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pla2g4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18783 MGI:1195256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptgs2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19225 MGI:97798
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC676712 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676712
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100043257 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 416 ESTs, 15 Proteins

name	LOC100043261 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043261
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 74 ESTs, 2 Proteins pseudo : _no_value

name	Pdc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20028 MGI:98090
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC003331 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226499 MGI:2385108
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Tpr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108989 MGI:1922066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625534 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625534 MGI:3643639
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 ESTs, 2 Proteins

name	EG545370 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545370 MGI:3646881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668040 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668040
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	LOC676758 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676758
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs

name	EG668050 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668050 MGI:3648958
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs

name	LOC668055 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668055
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs

name	3110040M04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73176 MGI:1920426
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs

name	LOC100043286 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043286
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs

name	Ivns1abp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:117198 MGI:2152389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	1200016B10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66875 MGI:1914125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1190005F20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98685 MGI:1916185
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19821 MGI:1101759
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Niban (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:63913 MGI:2137237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Edem3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66967 MGI:1914217
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pla2g4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133891677 GeneID:18783 MGI:1195256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phospholipase A2, group IVA (cytosolic, calcium-dependent) transcript_id : NM_008869.3

name	Ptgs2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130137 GeneID:19225 MGI:97798
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prostaglandin-endoperoxide synthase 2 transcript_id : NM_011198.3

name	LOC100043257 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234329 GeneID:100043257
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 416 ESTs, 15 Proteins product : similar to RNA binding motif protein 3 transcript_id : XM_001480197.1

name	Pdc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13277351 GeneID:20028 MGI:98090
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosducin transcript_id : NM_024458.1

name	BC003331 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116805316 GeneID:226499 MGI:2385108
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC003331 transcript_id : NM_001077237.1

name	BC003331 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116805314 GeneID:226499 MGI:2385108
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC003331 transcript_id : NM_145511.2

name	Tpr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27477056 GeneID:108989 MGI:1922066
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : translocated promoter region transcript_id : NM_133780.2

name	EG625534 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94363984 GeneID:625534 MGI:3643639
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 ESTs, 2 Proteins product : predicted gene, EG625534, transcript variant 2 transcript_id : XM_890112.2

name	EG625534 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234332 GeneID:625534 MGI:3643639
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : predicted gene, EG625534, transcript variant 1 transcript_id : XM_001480213.1

name	EG545370 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371430 GeneID:545370 MGI:3646881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG545370 transcript_id : NM_001024720.2

name	LOC676758 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234334 GeneID:676758
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs product : similar to U2-associated SR140 protein transcript_id : XM_001480223.1

name	EG668050 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364009 GeneID:668050 MGI:3648958
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs product : predicted gene, EG668050 transcript_id : XM_993953.1

name	LOC668055 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94364011 GeneID:668055
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs product : similar to U2-associated SR140 protein transcript_id : XM_993975.1

name	3110040M04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364013 GeneID:73176 MGI:1920426
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs product : RIKEN cDNA 3110040M04 gene transcript_id : XM_993996.1

name	LOC100043286 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234336 GeneID:100043286
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs product : similar to U2-associated SR140 protein transcript_id : XM_001480239.1

name	Ivns1abp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87239989 GeneID:117198 MGI:2152389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : influenza virus NS1A binding protein transcript_id : NM_054102.2

name	Ivns1abp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87239995 GeneID:117198 MGI:2152389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : influenza virus NS1A binding protein transcript_id : NM_001039512.1

name	Ivns1abp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87239991 GeneID:117198 MGI:2152389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : influenza virus NS1A binding protein transcript_id : NM_001039511.1

name	1200016B10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347972 GeneID:66875 MGI:1914125
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200016B10 gene transcript_id : NM_025819.3

name	1190005F20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363477 GeneID:98685 MGI:1916185
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1190005F20 gene transcript_id : NM_026876.2

name	Rnf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802412 GeneID:19821 MGI:1101759
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 2 transcript_id : NM_011277.2

name	Niban (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130415 GeneID:63913 MGI:2137237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : niban protein transcript_id : NM_022018.2

name	Edem3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88900436 GeneID:66967 MGI:1914217
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ER degradation enhancer, mannosidase alpha-like 3 transcript_id : NM_001039644.1

name	Pla2g4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679369 CCDS:CCDS15352.1 GeneID:18783 MGI:1195256
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004622 - lysophospholipase activity [Evidence IEA]; GO:0004623 - phospholipase A2 activity [Evidence IEA]; GO:0004620 - phospholipase activity [Evidence IEA] GO_process : GO:0016042 - lipid catabolism [Evidence IEA]; GO:0009395 - phospholipid catabolism [Evidence IEA] codon_start : 1 note : phospholipase A2, group 4; cPLA2-alpha; Type IV PLA2; cytosolic PLA2; cytosolic phospholipase A2 product : cytosolic phospholipase A2, group IVA protein_id : NP_032895.1

name	Ptgs2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981525 CCDS:CCDS15353.1 GeneID:19225 MGI:97798
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]; GO:0004666 - prostaglandin-endoperoxide synthase activity [Evidence IEA] GO_process : GO:0042640 - anagen [Evidence IMP]; GO:0008217 - blood pressure regulation [Evidence IMP]; GO:0006633 - fatty acid biosynthesis [Evidence IEA]; GO:0030216 - keratinocyte differentiation [Evidence NAS]; GO:0008610 - lipid biosynthesis [Evidence IEA]; GO:0001516 - prostaglandin biosynthesis [Evidence IEA] codon_start : 1 note : cyclooxygenase 2; prostaglandin G/H synthase; cyclooxygenase-2 product : prostaglandin-endoperoxide synthase 2 protein_id : NP_035328.2

name	LOC100043257 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234330 GeneID:100043257
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480247.1

name	Pdc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13277352 CCDS:CCDS15354.1 GeneID:20028 MGI:98090
definition	GO_component : GO:0005829 - cytosol [Evidence TAS] GO_function : GO:0005095 - GTPase inhibitor activity [Evidence ISS] GO_process : GO:0008277 - regulation of G-protein coupled receptor protein signaling pathway [Evidence ISS]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0009586 - rhodopsin mediated phototransduction [Evidence ISS]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 note : rod photoreceptor 1 product : phosducin protein_id : NP_077778.1

name	BC003331 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116805317 GeneID:226499 MGI:2385108
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC226499 isoform 2 protein_id : NP_001070705.1

name	BC003331 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116805315 CCDS:CCDS15355.1 GeneID:226499 MGI:2385108
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC226499 isoform 1 protein_id : NP_663486.2

name	Tpr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27477057 GeneID:108989 MGI:1922066
definition	GO_component : GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : nuclear pore complex-associated protein Tpr protein_id : NP_598541.2

name	EG625534 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82882918 GeneID:625534 MGI:3643639
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_895205.1

name	EG625534 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234333 GeneID:625534 MGI:3643639
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001480263.1

name	EG545370 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701546 CCDS:CCDS15357.1 GeneID:545370 MGI:3646881
definition	codon_start : 1 product : hypothetical protein LOC545370 protein_id : NP_001019891.1

name	LOC676758 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234335 GeneID:676758
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480273.1

name	EG668050 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94364010 GeneID:668050 MGI:3648958
definition	codon_start : 1 product : hypothetical protein protein_id : XP_999047.1

name	LOC668055 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94364012 GeneID:668055
definition	codon_start : 1 product : hypothetical protein protein_id : XP_999069.1

name	3110040M04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94364014 GeneID:73176 MGI:1920426
definition	codon_start : 1 product : hypothetical protein LOC73176 protein_id : XP_999090.1

name	LOC100043286 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234337 GeneID:100043286
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480289.1

name	Ivns1abp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87239990 CCDS:CCDS15359.1 GeneID:117198 MGI:2152389
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; kelch family protein Nd1 product : influenza virus NS1A binding protein isoform 2 protein_id : NP_473443.2

name	Ivns1abp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87239996 CCDS:CCDS15358.1 GeneID:117198 MGI:2152389
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; kelch family protein Nd1 product : influenza virus NS1A binding protein isoform 3 protein_id : NP_001034601.1

name	Ivns1abp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87239992 GeneID:117198 MGI:2152389
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; kelch family protein Nd1 product : influenza virus NS1A binding protein isoform 1 protein_id : NP_001034600.1

name	1200016B10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229006 CCDS:CCDS15360.1 GeneID:66875 MGI:1914125
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC66875 protein_id : NP_080095.2

name	1190005F20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74959790 CCDS:CCDS15361.1 GeneID:98685 MGI:1916185
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : N2,N2-dimethylguanosine tRNA methyltransferase-like protein_id : NP_081152.1

name	Rnf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563274 CCDS:CCDS15362.1 GeneID:19821 MGI:1101759
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0016604 - nuclear body [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0031519 - PcG protein complex [Evidence IDA]; GO:0001739 - sex chromatin [Evidence IDA]; GO:0000151 - ubiquitin ligase complex [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence IDA]; GO:0016564 - transcriptional repressor activity [Evidence IMP]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0009948 - anterior/posterior axis specification [Evidence IMP]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]; GO:0016574 - histone ubiquitination [Evidence IDA] [Evidence IGI]; GO:0000278 - mitotic cell cycle [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ring finger protein 2 protein_id : NP_035407.1

name	Niban (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11528504 GeneID:63913 MGI:2137237
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : niban protein protein_id : NP_071301.1

name	LOC676712 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:676712
definition	number : 1 pseudo : _no_value

name	LOC668040 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668040
definition	number : 1 pseudo : _no_value

name	LOC668040 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668040
definition	number : 2 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:158864
definition	standard_name : MHAa78c8.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:158862
definition	standard_name : M72394

name	(CDS detail)
type	STS
link
xref	UniSTS:254306
definition	standard_name : Ptgs2

name	(CDS detail)
type	STS
link
xref	UniSTS:272389
definition	standard_name : PMC27868P2

name	(CDS detail)
type	STS
link
xref	UniSTS:256486
definition	standard_name : Ptgs2

name	(CDS detail)
type	STS
link
xref	UniSTS:271010
definition	standard_name : PMC14708P2

name	(CDS detail)
type	STS
link
xref	UniSTS:271683
definition	standard_name : PMC18294P1

name	(CDS detail)
type	STS
link
xref	UniSTS:271016
definition	standard_name : PMC148819P3

name	(CDS detail)
type	STS
link
xref	UniSTS:224190
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:178476
definition	standard_name : M88242

name	(CDS detail)
type	STS
link
xref	UniSTS:128541
definition	standard_name : D1Mit200

name	(CDS detail)
type	STS
link
xref	UniSTS:463217
definition	standard_name : Pdc

name	(CDS detail)
type	STS
link
xref	UniSTS:158863
definition	standard_name : C77892

name	(CDS detail)
type	STS
link
xref	UniSTS:124435
definition	standard_name : 41.MMHAP84FRF11.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128705
definition	standard_name : D1Mit346

name	(CDS detail)
type	STS
link
xref	UniSTS:128533
definition	standard_name : D1Mit195

name	(CDS detail)
type	STS
link
xref	UniSTS:128642
definition	standard_name : D1Mit289

name	(CDS detail)
type	STS
link
xref	UniSTS:207213
definition	standard_name : BB283688

name	(CDS detail)
type	STS
link
xref	UniSTS:207212
definition	standard_name : AI132432

name	(CDS detail)
type	STS
link
xref	UniSTS:158865
definition	standard_name : AA960440

name	(CDS detail)
type	STS
link
xref	UniSTS:234231
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:207214
definition	standard_name : BB377812

name	(CDS detail)
type	STS
link
xref	UniSTS:165108
definition	standard_name : AW226554

name	(CDS detail)
type	STS
link
xref	UniSTS:158866
definition	standard_name : AI450156

name	(CDS detail)
type	STS
link
xref	UniSTS:210524
definition	standard_name : RH136542

name	(CDS detail)
type	STS
link
xref	UniSTS:178477
definition	standard_name : AI326319

name	(CDS detail)
type	STS
link
xref	UniSTS:499176
definition	standard_name : Cox7b

name	(CDS detail)
type	STS
link
xref	UniSTS:128817
definition	standard_name : D1Mit447

name	(CDS detail)
type	STS
link
xref	UniSTS:210039
definition	standard_name : RH136044

name	(CDS detail)
type	STS
link
xref	UniSTS:234233
definition

name	LOC100043261 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149234331 GeneID:100043261
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 74 ESTs, 2 Proteins product : similar to Bex4 protein pseudo : _no_value transcript_id : XR_034577.1

clone name	MSMg01-391B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275N23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-121B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069N18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-116D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-297J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001G06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255C12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-301G16.b	B6Ng01-301G16.g
ACC	GA095734	GA095735
length	1,203	963
definition	B6Ng01-301G16.b	B6Ng01-301G16.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctgacacaactaggatcacaggaaagacaggttccagtcagatat agtgaggacaggtagcactagagatagtctgatggtaggaagcaagcata agaacataagcaacagaaaccaaggttgcttggtgtcatcagaacccagt tctcccaccatagaaagtcttggatataccatcacaccagaaaagcaaga ctgggatctaaaatcacttctcatgatgatgatagaggactttaagaagg acataaatagctccctaaaagaaatacaggagaacacaggtaaacagcta gaagcccttaaagaagaaacacaaaaaaatcccttaaagaattacaggaa aatacaatcaaacaggcaaaggaaaggaataaaaccatccaggatctaaa aatggaaatagaaacaataatgaaaccacaaagtgtgtcaaccctggagg gagaaaacctaggaaagagatcaggagttatagatggaagcatcaccaac agaatacaagagatagaagagggaatctcagaggcagaagataccataga aaacattgaaaatgcaaaaatgcaaaaagctcttaacccaaaatcagaag atccaggaaatctaggacacaatgagaagactaaacctaaggataataga tatagaagagagtgaagattctcaaattgaaggaccagtaaatatcttca gcaaaagtatagatgaaaccttccctaacctaaagaaagagatgatcata aacatacaagaagcctacagaactccaaatagattaggccagaaaagaaa tttctcctgtcacataatagtcaaagcaccaaaggcacaaaataaagaaa gaatattaaaagcagtaaagggaaaaaggacaagtaacatataaaggcag acctatcagaattacaccagacttctcactagagactatgaaagctagaa gatcctgggcaaatgtcatatagacactaagagaacataaatgcccaact cagctactaatacccagcaaaacctctcattatcatagatggagaaaaca aggatattcacgagaaaacccaaattacacaacatcttcacaaatctagc ctacaaaggatggatggatgaaaacacggaaccacaggaggaattccata ccctaggaaaggcggaaaggtaattcttcccaaccaaactcccaaaggcc cag	gaattcctcagaaggctgaagtgacgtagtatgccctcatcctttcctac agctgccattagtcttcagctaattttgtcttaatgacttggcagtgcgt ctccagctccaaggaagaacatcgagctactcatgaaagcaagaaatgta atttccaggatcacgacagaatacgaaactctcaaatatgctgtcaattt gtggcggcataagggaatctcatgtttttaaaagccatattaagttagac agtagtgaagaaaagttgcaaatttaggtcagtttggaagcttgatgaca tctgggtatggagaggcagtttctctccagattgtgagtctacatgaatc agtgcgacagttaaattttgttcttttcatctgcatttgtatttgaattc atttcatgtcctttattaaaaaaatctcttcctttttagaattaagtgag cacctttcctaggtgttcacgatacagaacgaaccccttattaacatgac atcggtatgaagctgccatgctttggggtctgctgcatttgataccctag tcacctggctgatttttttttcatgttattgactgaatcagttgcttgtt ttggacttaaatgaatcaaaaacaggtgtgaaaactcttaaactttaatc attataatgtcttgtgtctcagtaactcgggtccttgggttatctgttct ctcactctgtgatacaacaaacacaggactactccctccctcacctcctc ctgcaactgagaatctggtctcagcatctctcaacacattgcctagacgg ttactaaagaatgggaatgctatggaggtgttccacccctgcattcttta agtcagtccccagccactccccaagaactatgcctctgattctttaaaca aatgactgaaccaacacgactttatatttggaggttaaacttactaaggt atggggtattttt
quality values	Open. Hide. 49 24 30 35 58 54 42 54 42 42 21 41 35 62 62 47 41 62 62 31 37 41 43 62 47 62 62 47 62 62 62 47 32 39 32 49 56 62 62 44 44 62 62 62 54 62 62 62 62 62 59 62 62 62 62 62 62 59 51 62 62 62 62 62 62 62 62 59 59 62 62 59 59 46 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 54 58 58 58 58 58 58 58 54 54 58 58 58 54 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 54 45 42 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 54 58 54 58 58 54 58 54 41 58 58 58 58 58 58 52 58 58 47 58 58 58 53 46 43 58 58 58 58 58 58 41 58 58 58 51 51 58 58 58 53 50 49 33 58 46 53 53 58 51 51 45 32 51 47 58 53 58 58 51 58 58 58 54 50 39 58 58 58 58 58 58 51 47 58 50 52 58 58 58 48 47 58 50 50 58 58 58 58 58 50 58 53 58 39 50 58 49 58 41 37 51 58 49 51 58 52 52 58 58 52 49 39 54 47 38 47 58 58 49 44 49 54 54 54 50 58 46 24 50 50 49 58 50 58 58 53 58 52 45 39 34 51 54 54 44 49 54 52 37 52 37 54 32 33 53 53 49 53 52 54 37 42 42 54 52 53 54 50 54 34 53 53 42 53 34 53 38 39 23 50 52 51 40 44 49 37 31 49 51 42 53 37 54 35 15 46 37 45 37 33 54 47 45 33 33 52 52 53 40 40 42 45 40 54 54 53 42 42 37 38 45 39 39 30 52 47 51 40 28 45 53 40 29 46 51 40 39 35 32 52 43 53 51 34 34 46 51 37 32 45 31 32 27 53 32 27 37 32 47 46 51 32 36 29 45 31 45 29 42 31 51 46 31 30 41 31 39 31 30 31 51 32 31 45 33 42 31 51 36 43 31 31 33 26 31 20 22 11 5 40 31 39 51 51 48 42 38 42 47 30 31 48 46 37 31 31 42 31 46 31 31 29 31 31 31 13 33 33 31 30 31 37 36 48 31 32 31 29 35 39 16 46 9 9 33 14 14 10 24 41 48 31 31 31 47 31 30 33 48 33 24 21 29 25 25 31 28 33 46 46 32 31 31 32 36 19 9 44 11 31 46 14 29 46 47 46 33 27 31 23 18 8 32 31 31 21 22 31 24 42 32 35 25 41 14 24 38 21 24 33 33 18 37 34 27 37 34 32 22 36 31 16 31 18 33 13 29 36 23 18 27 10 26 7 21 32 28 24 29 22 28 13 26 14 21 21 32 31 32 21 33 47 31 19 34 32 27 23 15 34 18 34 18 16 18 12 19 47 28 15 22 43 14 17 32 27 20 15 26 23 20 21 22 28 19 14 32 32 28 24 16 28 12 28 27 15 20 28 15 34 20 26 27 12 27 9 13 15 19 25 15 3 3 5 11 16 25 26 12 5 5 11 28 28 15 12 23 16 21 29 27 11 11 8 11 12 16 14 24 21 7 20 28 18 21 27 24 24 28 17 29 28 19 20 21 34 28 19 5 5 23 5 5 18 16 13 7 14 7 6 15 14 18 8 5 26 17 21 4 22 7 15 17 8 3 8 4 4 4 4 4 8 6 6 11 8 19 13 3 2 6 9 30 11 15 13 21 16 12 18 13 6 6 11 7 24 14 15 16 16 8 7 6 5 6 6 5 22 12 11 2 14 28 16 4 3 4 6 4 17 7 6 10 5 17 20 7 9 3 5 5 1 3 1 4 6 5 3 4 3 3 14 14 5 6 17 17 12 17 24 5 7 10 7 14 11 22 8 6 4 6 7 18 9 5 7 4 2 3 6 6 9 8 8 5 6 15 3 3 7 17 16 7 12 23 16 6 7 4 3 6 18 5	Open. Hide. 62 47 56 41 62 62 62 62 47 47 31 62 56 24 37 22 56 62 43 49 56 62 62 59 44 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 49 54 62 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 35 62 62 62 62 62 62 62 62 62 59 62 62 59 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 58 58 58 58 58 58 52 58 58 58 58 58 58 58 58 54 58 58 58 54 58 54 58 58 58 58 58 58 54 58 58 58 58 58 54 58 54 58 58 58 52 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 42 58 58 58 58 58 52 58 58 51 58 49 58 54 58 58 58 58 53 53 58 58 53 58 58 58 51 50 58 58 54 58 58 58 58 51 53 53 47 51 58 58 58 58 58 51 50 53 58 58 58 47 50 58 50 58 58 58 48 50 50 58 51 41 49 52 58 52 58 58 51 52 58 39 47 58 58 58 50 53 58 37 49 50 58 52 58 50 49 53 45 49 44 54 49 45 52 53 39 54 54 38 45 54 46 44 46 42 44 51 53 53 52 34 39 33 38 37 44 54 41 40 37 53 53 32 54 42 42 40 44 44 49 37 52 52 45 52 52 28 45 52 53 40 54 42 46 36 49 47 31 53 34 33 33 45 34 32 32 34 52 52 45 32 32 31 33 49 47 32 45 28 34 40 34 31 51 32 51 40 31 31 39 42 21 51 51 51 47 47 51 51 31 39 21 31 51 29 32 30 24 34 31 31 31 30 31 29 33 31 31 28 25 31 31 31 32 32 34 42 24 46 48 31 31 13 31 24 36 43 17 47 26 31 31 29 29 29 31 34 46 47 46 30 28 12 24 21 20 38 31 34 42 48 46 30 30 31 43 33 31 31 47 31 31 31 48 33 16 33 27 34 33 28 25 31 36 38 31 26 39 23 37 22 19 37 18 31 33 32 31 25 20 18 31 24 17 22 26 33 26 44 29 22 27 20 14 22 33 44 24 36 19 20 21 21 11 7 5 6 9 16 16 5 14 9 11 5 13 21 27 24 27 34 19 10 9 6 23 21 15 43 10 5 5 7 9 12 32 21 28 34 21 12 11 7 47 31 33 14 48 22 19 16 16 6 6 8 33 11 10 24 30 15 16 21 22 19 21 25 31 26 9 32 29 18 24 12 20 19 7 16 20 24 23 20 28 18 14 8 3 3 10 21 25 15 9 4 3 5 7 10 27 13 22 26 16 12 28 11 11 18 10 19 20 28 13 27 40 27 6 7 3 3 6 47 20 27 27 11 27 20 24 13 10 5 4 6 8 21 8 4 3 13 21 10 24 12 13 13 6 5 8 18 17 14 7 9 5 10 21 7 19 12 24 20 13 13 9 23 16 6 4 8 17 6 3 3 3 7 8 5 5 9 15 9 9 16 13 3 2 7 16 21 9 9 8 9 5 12 8 5 8 6 4 16 14 3 4 5 6 3 3 4 10 14 6 5 8 23 7 5 18 10 2 7 13 5 23 6 10 10 14 17 8 5 21 5 6 10 24 5 5 8 5 11 5 9 7 16 16 15 8 4 3 1 5 4 12 8 5 21 15 5 3 28 28 22 4 6 6 26 28 17 5

Alignment Information

BAC End 1

BAC End 2

seq1: chr1_152598818_152599795
seq2: B6Ng01-301G16.g_67_1029

seq1  GAATTCCTCAGAAGGCTGAAGTGACGTAGTATGCCCTCATCCTTTCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAAGGCTGAAGTGACGTAGTATGCCCTCATCCTTTCCTAC  50

seq1  AGCTGCCATTAGTCTTCAGCTAATTTTGTCTTAATGACTTGGCAGTGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCATTAGTCTTCAGCTAATTTTGTCTTAATGACTTGGCAGTGCGT  100

seq1  CTCCAGCTCCAAGGAAGAACATCGAGCTACTCATGAAAGCAAGAAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTCCAAGGAAGAACATCGAGCTACTCATGAAAGCAAGAAATGTA  150

seq1  ATTTCCAGGATCACGACAGAATACGAAACTCTCAAATATGCTGTCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGGATCACGACAGAATACGAAACTCTCAAATATGCTGTCAATTT  200

seq1  GTGGCGGCATAAGGGAATCTCATGTTTTTAAAAGCCATATTAAGTTAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGCATAAGGGAATCTCATGTTTTTAAAAGCCATATTAAGTTAGAC  250

seq1  AGTAGTGAAGAAAAGTTGCAAATTTAGGTCAGTTTGGAAGCTTGATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGAAGAAAAGTTGCAAATTTAGGTCAGTTTGGAAGCTTGATGACA  300

seq1  TCTGGGTATGGAGAGGCAGTTTCTCTCCAGATTGTGAGTCTACATGAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTATGGAGAGGCAGTTTCTCTCCAGATTGTGAGTCTACATGAATC  350

seq1  AGTGCGACAGTTAAATTTTGTTCTTTTCATCTGCATTTGTATTTGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGACAGTTAAATTTTGTTCTTTTCATCTGCATTTGTATTTGAATTC  400

seq1  ATTTCATGTCCTTTATTAAAAAAATCTCTTCCTTTTTAGAATTAAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGTCCTTTATTAAAAAAATCTCTTCCTTTTTAGAATTAAGTGAG  450

seq1  CACCTTTCCTAGGTGTTCACGATACAGAACGAACCCCTTATTAACATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCCTAGGTGTTCACGATACAGAACGAACCCCTTATTAACATGAC  500

seq1  ATCGGTATGAAGCTGCCATGCTTTGGGGTCTGCTGCATTTGATACCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTATGAAGCTGCCATGCTTTGGGGTCTGCTGCATTTGATACCCTAG  550

seq1  TCACCTGGCTGATTTTTTTTTCATGTTATTGACTGAATCAGTTGCTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGCTGATTTTTTTTTCATGTTATTGACTGAATCAGTTGCTTGTT  600

seq1  TTGGACTTAAATGAATCAAAAACAGGTGTGAAAACTCTTAAACTTTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTAAATGAATCAAAAACAGGTGTGAAAACTCTTAAACTTTAATC  650

seq1  ATTATAATGTCTTGTGTCTCAGTAACTCGGGTCCTTGGGTTATCTGTCTC  700
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  ATTATAATGTCTTGTGTCTCAGTAACTCGGGTCCTTGGGTTATCTGTTCT  700

seq1  CTCACCTCTGTGATACAACAAACACAGGACTACTCCCTCCCTCA-CTCCT  749
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCA-CTCTGTGATACAACAAACACAGGACTACTCCCTCCCTCACCTCCT  749

seq1  CCCTGCAACTGAGAATCTGGTCTCAGCATCCTTCTCAACACAATTGCCTA  799
       |||||||||||||||||||||||||||||  ||||||||| ||||||||
seq2  -CCTGCAACTGAGAATCTGGTCTCAGCATC--TCTCAACAC-ATTGCCTA  795

seq1  GACGGTTACTAAAAGAAAGGGGGAAATGCTAT-GAGGTGTTCCAACTCTG  848
      |||||||||| |||||| |||   |||||||| ||||||||||| | |||
seq2  GACGGTTACT-AAAGAATGGG---AATGCTATGGAGGTGTTCCACCCCTG  841

seq1  CA-TCTTTAAGTCAGTCCACAG-CACTCTCCAAGAAACCTATG-CTCTGA  895
      || ||||||||||||||| ||| ||||| |||||||  ||||| ||||||
seq2  CATTCTTTAAGTCAGTCCCCAGCCACTCCCCAAGAA--CTATGCCTCTGA  889

seq1  -TCTTTAAACACAATGACATGGACCCCAACACGACTTTATTATTTGAGGT  944
       |||||||||| |||||| || |  |||||||||||||||  || |||||
seq2  TTCTTTAAACA-AATGAC-TGAA--CCAACACGACTTTATATTTGGAGGT  935

seq1  TATAACTAAATTTAAGTTAATTGGGGGTATTTTT  978
      || |||| |   |||| ||    |||||||||||
seq2  TA-AACTTA--CTAAGGTA---TGGGGTATTTTT  963

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information