BAC Information

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BAC

Clone NameB6Ng01-302K11
Chromosome1 (Build37)
Map Location 42,464,230 - 42,601,191
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302K11.bB6Ng01-302K11.g
ACCGA096648GA096649
length1,0451,144
definitionB6Ng01-302K11.b B6Ng01-302K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,464,230 - 42,465,285)(42,600,044 - 42,601,191)
sequence
gaattctgcataataataattcatttttggagctcacatggagaggcata
cctgcaaagacagaaccttacaactgcaagctcaagcattgctggggaaa
caaagactcgcaaacctgggaactaggtctgacaagcaaaagagacacac
acgtgagtaaggcatgggtgagttctgcagaggcagatacactcatacag
aggtgggtatgggcatgctgcacccccagcactctgcctcttgcctacca
tagcagatgcttcctggtgtgtgcatgtgtatgttgcatacactatgtct
gtgtgtataccaagcatacttagactcttttggtattttaatgttttgca
cttaaaacaatatgacattttggtaccctgactcctctggggatttgtaa
aattatgactccagttgaagtcataggtagcagtggccctaggtaacccc
ttcagcaatgcccatagatgggaatgtggcctctctttgccagctacacc
ctatttgagaacaatgtggttctctagtttgagttggcgttgggttttga
agggagttttctctatgatgattcctggacagatggggctcatggaaaaa
cacatgtgacctgagacatcacacacagaggatgacaaattaaattacct
ttacttttatttcgttttattttatgtgtatgagtgtttttttcgacatg
catgtttgtgtaccacattcatggctggttctagagaagaggccagaaga
gggctcagatcccctggaattggagtcacagctgactagtaagccatgtg
ggtcctgggaattgatgctaagtcctccagaagaacatcaagtgctttta
acagctgagctacccctccagtcctgaggataagaatgaatcctcccctt
tctgtttctcgtgcacactggaatcagatctaacacacactttagtgtga
gtgcatttgctcttgttaatattcgaattttcaagggctaccatgttaaa
cagacagaatattaagtgatctgggtgatgtttagataagttaaa

gaattccaagaggtatgtccttacgtgtgatttaaaaaaaaaaaaaaaag
gaaaaaaaacagttctgggagaagttgaattattaaagaatgcatttaaa
aaatctaagcaaagatgcaaaccatgaatacttcctagaggtttttaaat
tctttattaaaataagtgtgtgaggcccagaaaacccagttgcatttgtc
tctactaaaacatcaccttaaattctaccaaaattgaatttgacacaatt
caggtcaggtttcctaacaatagaaccctgcaccatgggacccctagtct
gtccaattcagggacttccttcatcagtcacccagtacccagcaagccca
atccaatcctgtgcaggaaaagcaattaaacattttaagcagagataaga
gaatcacaaatacccagtttctatggcctgaccagctacctggccgtgta
aaagtctctaagtgcaagaatttattgcagaattgtagccagcctaagag
gcattgatttctgcagcgtgtgtagattgctggttttaaagagaaatccc
taatgatgttcatctttaatttttctcttcaaatagaaaggaggcaagtt
gtgcataaaggcctcagtgtaagcaaatgagtgtctttatggctgtaaag
atgtattgtgagacttctcacaaaaataggaacccagcaaaccgcctggg
tgtaattaggcataatctgacgcatgcaacccataacggaggaagagcta
attacaatcacaatacactgtgcttagagacatatttattgtgcttagtc
ttaagatgtttacgtcacctgaaggaaagggctccaggagcacttcgatg
taatcaaagcagagaccatcttcccttccgaaaccacatttactttcatc
gctgtagtttaaaggcagatggcattgcaatccacattaacctctgggaa
cctcacctgccgcaaggctagcgctgctgaaaacaaaactcacgccccga
ccacaaactcaagccccgccaacccatcttcactcacacactcactggga
gttaaaatgaaatacagttcctgtcaggattaccaacactgactgctcaa
gagtacctacgagcgcagtctttataagggacgaagccaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_42464230_42465285
seq2: B6Ng01-302K11.b_47_1091

seq1  GAATTCTGCATAATAATAATTCATTTTTGGAGCTCACATGGAGAGGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATAATAATAATTCATTTTTGGAGCTCACATGGAGAGGCATA  50

seq1  CCTGCAAAGACAGAACCTTACAACTGCAAGCTCAAGCATTGCTGGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAGACAGAACCTTACAACTGCAAGCTCAAGCATTGCTGGGGAAA  100

seq1  CAAAGACTCGCAAACCTGGGAACTAGGTCTGACAAGCAAAAGAGACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTCGCAAACCTGGGAACTAGGTCTGACAAGCAAAAGAGACACAC  150

seq1  ACGTGAGTAAGGCATGGGTGAGTTCTGCAGAGGCAGATACACTCATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGTAAGGCATGGGTGAGTTCTGCAGAGGCAGATACACTCATACAG  200

seq1  AGGTGGGTATGGGCATGCTGCACCCCCAGCACTCTGCCTCTTGCCTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTATGGGCATGCTGCACCCCCAGCACTCTGCCTCTTGCCTACCA  250

seq1  TAGCAGATGCTTCCTGGTGTGTGCATGTGTATGTTGCATACACTATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGATGCTTCCTGGTGTGTGCATGTGTATGTTGCATACACTATGTCT  300

seq1  GTGTGTATACCAAGCATACTTAGACTCTTTTGGTATTTTAATGTTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATACCAAGCATACTTAGACTCTTTTGGTATTTTAATGTTTTGCA  350

seq1  CTTAAAACAATATGACATTTTGGTACCCTGACTCCTCTGGGGATTTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACAATATGACATTTTGGTACCCTGACTCCTCTGGGGATTTGTAA  400

seq1  AATTATGACTCCAGTTGAAGTCATAGGTAGCAGTGGCCCTAGGTAACCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGACTCCAGTTGAAGTCATAGGTAGCAGTGGCCCTAGGTAACCCC  450

seq1  TTCAGCAATGCCCATAGATGGGAATGTGGCCTCTCTTTGCCAGCTACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAATGCCCATAGATGGGAATGTGGCCTCTCTTTGCCAGCTACACC  500

seq1  CTATTTGAGAACAATGTGGTTCTCTAGTTTGAGTTGGCGTTGGGTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGAGAACAATGTGGTTCTCTAGTTTGAGTTGGCGTTGGGTTTTGA  550

seq1  AGGGAGTTTTCTCTATGATGATTCCTGGACAGATGGGGCTCATGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTTTCTCTATGATGATTCCTGGACAGATGGGGCTCATGGAAAAA  600

seq1  CACATGTGACCTGAGACATCACACACAGAGGATGACAAATTAAATTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGACCTGAGACATCACACACAGAGGATGACAAATTAAATTACCT  650

seq1  TTACTTTTATTTCGTTTTATTTTATGTGTATGAGTGTTTTTTTCGACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTATTTCGTTTTATTTTATGTGTATGAGTGTTTTTTTCGACATG  700

seq1  CATGTTTGTGTACCACATTCATGGCTGGTTCTAGAGAAGAGGCCAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGTGTACCACATTCATGGCTGGTTCTAGAGAAGAGGCCAGAAGA  750

seq1  GGGCTCAGATCCCCTGGAATTGGAGTCACAGCTGACTAGTAAGCCATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGATCCCCTGGAATTGGAGTCACAGCTGACTAGTAAGCCATGTG  800

seq1  GGTCCTGGGAATTGATGCTAAGTCCTCCAGAAGAACATCAAGTGCTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGGAATTGATGCTAAGTCCTCCAGAAGAACATCAAGTGCTTTTA  850

seq1  ACAGCTGAGCTACCCCTCCAGTCCTGAGGATAAGAAATGAATCCTCCCCT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGCTGAGCTACCCCTCCAGTCCTGAGGATAAG-AATGAATCCTCCCCT  899

seq1  TTCTGTTTCTCGTGCAACACTGGAATCAGATCTAAACAACACACTTTAGT  950
      ||||||||||||||| |||||||||||||||||||   ||||||||||||
seq2  TTCTGTTTCTCGTGC-ACACTGGAATCAGATCTAA--CACACACTTTAGT  946

seq1  GTGAGTGCAATTTGCTCTTGTTAATATTCGAATTTCCAAGGGGCTAACCA  1000
      |||||||| |||||||||||||||||||||||||| ||| ||||| ||||
seq2  GTGAGTGC-ATTTGCTCTTGTTAATATTCGAATTTTCAA-GGGCT-ACCA  993

seq1  TGTTAAACAGACAGAATATTAGGTGGAATTCTTGGGTGATGTTTAGATAA  1050
      ||||||||||||||||||||| |||  ||   ||||||||||||||||||
seq2  TGTTAAACAGACAGAATATTAAGTG--AT--CTGGGTGATGTTTAGATAA  1039

seq1  GTTAAA  1056
      ||||||
seq2  GTTAAA  1045


seq1: chr1_42600044_42601191
seq2: B6Ng01-302K11.g_68_1211 (reverse)

seq1  TGCCT--GCTTCGTCCTTTAATAAGGACCTGCGCTCGTAGGTACCCTTCC  48
      |||||  ||||||||| || |||| || ||||||||||||||||     |
seq2  TGCCTTGGCTTCGTCCCTT-ATAAAGA-CTGCGCTCGTAGGTAC----TC  44

seq1  TTGAGCAGTCAGTGGTTGGGTTATCCTGGCCAGGGACTGTATTTCAATTT  98
      ||||||||||||||  | ||| ||||| | |||| ||||||||||| |||
seq2  TTGAGCAGTCAGTG--TTGGTAATCCT-GACAGGAACTGTATTTCATTTT  91

seq1  TACCTCCAGTGAGTGTTGTGAGGTGAGGATGGGTGGGCGGGGCTTGAGTT  148
       ||  |||||||||| ||||| |||| ||||||| |||||||||||||||
seq2  AACTCCCAGTGAGTG-TGTGA-GTGAAGATGGGTTGGCGGGGCTTGAGTT  139

seq1  TGTGGGCGGGGCGTGAG-TTTGTTTTCAGCAGCGCTAG-CTTGCGGCAGG  196
      ||||| ||||||||||| |||||||||||||||||||| |||||||||||
seq2  TGTGGTCGGGGCGTGAGTTTTGTTTTCAGCAGCGCTAGCCTTGCGGCAGG  189

seq1  TGAGGTT-CCAGAGGTTAATGTGGATTGCAATGCCATCTGCC-TTAAACT  244
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TGAGGTTCCCAGAGGTTAATGTGGATTGCAATGCCATCTGCCTTTAAACT  239

seq1  ACAGCGATGAAAGTAAATGTGGTTTCGGAA-GGAAGATGGTCTCTGCTTT  293
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAGCGATGAAAGTAAATGTGGTTTCGGAAGGGAAGATGGTCTCTGCTTT  289

seq1  GATTACATCGAAGTGCTCCTGGAGCCCTTTCCTTCAGGTGACGTAAACAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATCGAAGTGCTCCTGGAGCCCTTTCCTTCAGGTGACGTAAACAT  339

seq1  CTTAAGACTAAGCACAATAAATATGTCTCTAAGCACAGTGTATTGTGATT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACTAAGCACAATAAATATGTCTCTAAGCACAGTGTATTGTGATT  389

seq1  GTAATTAGCTCTTCCTCCGTTATGGGTTGCATGCGTCAGATTATGCCTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGCTCTTCCTCCGTTATGGGTTGCATGCGTCAGATTATGCCTAA  439

seq1  TTACACCCAGGCGGTTTGCTGGGTTCCTATTTTTGTGAGAAGTCTCACAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCCAGGCGGTTTGCTGGGTTCCTATTTTTGTGAGAAGTCTCACAA  489

seq1  TACATCTTTACAGCCATAAAGACACTCATTTGCTTACACTGAGGCCTTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTTACAGCCATAAAGACACTCATTTGCTTACACTGAGGCCTTTA  539

seq1  TGCACAACTTGCCTCCTTTCTATTTGAAGAGAAAAATTAAAGATGAACAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACTTGCCTCCTTTCTATTTGAAGAGAAAAATTAAAGATGAACAT  589

seq1  CATTAGGGATTTCTCTTTAAAACCAGCAATCTACACACGCTGCAGAAATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGGATTTCTCTTTAAAACCAGCAATCTACACACGCTGCAGAAATC  639

seq1  AATGCCTCTTAGGCTGGCTACAATTCTGCAATAAATTCTTGCACTTAGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTCTTAGGCTGGCTACAATTCTGCAATAAATTCTTGCACTTAGAG  689

seq1  ACTTTTACACGGCCAGGTAGCTGGTCAGGCCATAGAAACTGGGTATTTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACACGGCCAGGTAGCTGGTCAGGCCATAGAAACTGGGTATTTGT  739

seq1  GATTCTCTTATCTCTGCTTAAAATGTTTAATTGCTTTTCCTGCACAGGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTTATCTCTGCTTAAAATGTTTAATTGCTTTTCCTGCACAGGAT  789

seq1  TGGATTGGGCTTGCTGGGTACTGGGTGACTGATGAAGGAAGTCCCTGAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGGGCTTGCTGGGTACTGGGTGACTGATGAAGGAAGTCCCTGAAT  839

seq1  TGGACAGACTAGGGGTCCCATGGTGCAGGGTTCTATTGTTAGGAAACCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGACTAGGGGTCCCATGGTGCAGGGTTCTATTGTTAGGAAACCTG  889

seq1  ACCTGAATTGTGTCAAATTCAATTTTGGTAGAATTTAAGGTGATGTTTTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAATTGTGTCAAATTCAATTTTGGTAGAATTTAAGGTGATGTTTTA  939

seq1  GTAGAGACAAATGCAACTGGGTTTTCTGGGCCTCACACACTTATTTTAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGACAAATGCAACTGGGTTTTCTGGGCCTCACACACTTATTTTAAT  989

seq1  AAAGAATTTAAAAACCTCTAGGAAGTATTCATGGTTTGCATCTTTGCTTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTTAAAAACCTCTAGGAAGTATTCATGGTTTGCATCTTTGCTTA  1039

seq1  GATTTTTTAAATGCATTCTTTAATAATTCAACTTCTCCCAGAACTGTTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTAAATGCATTCTTTAATAATTCAACTTCTCCCAGAACTGTTTT  1089

seq1  TTTTCCTTTTTTTTTTTTTTTTAAATCACACGTAAGGACATACCTCTTGG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTTTTTTTTTTTTTAAATCACACGTAAGGACATACCTCTTGG  1139

seq1  AATTC  1148
      |||||
seq2  AATTC  1144


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