BAC Information

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BAC

Clone NameB6Ng01-303C14
Chromosome1 (Build37)
Map Location 171,614,959 - 171,734,814
singlet/doubletdoublet
Overlap geneRgs5, Rgs4
Upstream geneEG383613, Nuf2
Downstream geneLOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303C14.bB6Ng01-303C14.g
ACCGA097030GA097031
length1,0371,147
definitionB6Ng01-303C14.b B6Ng01-303C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,733,773 - 171,734,814)(171,614,959 - 171,616,097)
sequence
gaattcatctcaggtttatttttattggctcatgaaactcattctcaaaa
ttacttcttaatatgtaacttgagatcagttaatatgaacccagtcaacc
ctaatagtttgtggagtatgtagaatgaactagagttttgtgttaaaata
tctgtttcaacaaaacaagcctattccaaagttattcacaaaatatggta
acacattgaaaattacttttgcaaggttccagggttatggatttcaagac
cattagctctagttctttacaataagattggcaaccacttggcacaagta
caaaaaaggctttagggttggctcgtatcatacagcatagctattattaa
caaagccgataaaaacaaagtggaaaaagtgctaacagaaaagcagcttc
gttggattttctaatggtatctgaatacatagatcatctatacgctttgc
cggaaagtaaatgtgcccaggagtcatgctgccttcttgccttctgtagg
agcctttagagatattatctatcagttaaaatagcatctttatttttagt
tcaaacctggctaataatacatttcttatactgacatattttcataaata
ttcaagtttgaaatttttggagaaaaaaaaattatgcatttccattttta
ggaagcaaacacccaagagaatttcccacgcatagaaattaaagaaggaa
tagataaatgagtgtatttcagctcagtgtgggtggaaaactttggctgg
tgattgagtgacaggcagctagctcttaatgttctattttaaagaggcag
aaagttaaacttgaaaacaacagatatattcaaaatcttcacagctaaag
tacataattctttgtgaaactttcaaaatatgttgttctgaaatcttgaa
aatgcacagcatttttaacaaaataatggggccacaccataaagaaccac
tgtttggtagaggaactgcctaattatttcttcaagtctctatggcaggt
acagaggagtgcttcagatcccacttcagagaatttg
gaattccttgcattaacataggctattgcctctcagagttgatatagtta
tgaaagcgttcattaaatcaaattttcttcagtagaaataaaccctatac
aagctgctgttcaatattttctcattagcaagtatttattcactcaaaat
aatttttaaattatgttatttattagtaatgcatgcagtgtgtgtgtgtg
tgtgtgtgtacatgcacgcatgtggggagatcggagggcaactttcatga
gttggttctctcttttcactaagggttctggaacagaattcggggcatca
ggtttacacagcaaatacctttaccagctcagccatctcactggccctaa
acatgatttttaatcatttgggaggtccttgactttgttcttaaaataca
tcagattcttatgagttttgccttcagttctgaaacaggagccatctgtt
tttgtttattaggtctatagggcacatagcaagtatgttgatctttaaaa
ccaaaaatagattgtgcatggggacttgcataattccaccctagcatcac
cagggacatggattctcccatatgagcatttttaagagcaaacagggacg
aagcccagtctgtgcagcacagtctttatttgggttctcttttcccaaga
gttgcaaaaggtcagagcatttcctcagacaccccgtgggctggactgtc
tcgaggcacgaagcagctagctccaggctcagccattggttcccatcttc
acagttggctttggctctcttcctttgctttctagttttcttccttctgt
gtcatgggtccaaattctcaccgtctcactgacgggcagacaatgatcat
aaaatgcgtgatataagagctattctttattcctgtactctttatgttat
tccaagaaatttgcatatattggtctacttagtgattgcaataatctcat
gacttaggtgcaacaagtaactctattttttcaggaaaatagggtagttt
gtctatgggcataaatacacaaaaacaaagtgagtatcactttttcttta
aagttcatgtctgctggatggtgcacgccctttaactcccaggttcttca
aggagcagaagcaagggcagatcttgagtttcaaggacagtcttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_171733773_171734814
seq2: B6Ng01-303C14.b_44_1080 (reverse)

seq1  CAAATTCTCTGGAAGTGGGATCTGAAAGGCACTCCTCTGTACCTGCCATA  50
      |||||||||| |||||||||||||||  ||||||||||||||||||||||
seq2  CAAATTCTCT-GAAGTGGGATCTGAA--GCACTCCTCTGTACCTGCCATA  47

seq1  GAGACTTGGAAGAAATAATTAGGCAGTTCCCTCTACCAAACAGTGGTTCT  100
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  GAGACTT-GAAGAAATAATTAGGCAGTT-CCTCTACCAAACAGTGGTTCT  95

seq1  TTATGGTGTGGCCCCATTATTTTGTTAAAAATGCTGTGCATTTTCAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTGTGGCCCCATTATTTTGTTAAAAATGCTGTGCATTTTCAAGAT  145

seq1  TTCAGAACAACATATTTTGAAAGTTTCACAAAGAATTATGTACCTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCAGAACAACATATTTTGAAAGTTTCACAAAGAATTATGTACTTTAGCT  195

seq1  GTGAAGATTTTGAATATATCTGTTGTTTTCAAGTTTAACTTTCTGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATTTTGAATATATCTGTTGTTTTCAAGTTTAACTTTCTGCCTCT  245

seq1  TTAAAATAGAACATTAAGAGCTAGCTGCCTGTCACTCAATCACCAGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGAACATTAAGAGCTAGCTGCCTGTCACTCAATCACCAGCCAA  295

seq1  AGTTTTCCACCCACACTGAGCTGAAATACACTCATTTATCTATTCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCACCCACACTGAGCTGAAATACACTCATTTATCTATTCCTTCT  345

seq1  TTAATTTCTATGCGTGGGAAATTCTCTTGGGTGTTTGCTTCCTAAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTATGCGTGGGAAATTCTCTTGGGTGTTTGCTTCCTAAAAATG  395

seq1  GAAATGCATAATTTTTTTTTCTCCAAAAATTTCAAACTTGAATATTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCATAATTTTTTTTTCTCCAAAAATTTCAAACTTGAATATTTATG  445

seq1  AAAATATGTCAGTATAAGAAATGTATTATTAGCCAGGTTTGAACTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTCAGTATAAGAAATGTATTATTAGCCAGGTTTGAACTAAAAA  495

seq1  TAAAGATGCTATTTTAACTGATAGATAATATCTCTAAAGGCTCCTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGCTATTTTAACTGATAGATAATATCTCTAAAGGCTCCTACAGA  545

seq1  AGGCAAGAAGGCAGCATGACTCCTGGGCACATTTACTTTCCGGCAAAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAAGGCAGCATGACTCCTGGGCACATTTACTTTCCGGCAAAGCG  595

seq1  TATAGATGATCTATGTATTCAGATACCATTAGAAAATCCAACGAAGCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGATCTATGTATTCAGATACCATTAGAAAATCCAACGAAGCTGC  645

seq1  TTTTCTGTTAGCACTTTTTCCACTTTGTTTTTATCGGCTTTGTTAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTAGCACTTTTTCCACTTTGTTTTTATCGGCTTTGTTAATAAT  695

seq1  AGCTATGCTGTATGATACGAGCCAACCCTAAAGCCTTTTTTGTACTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCTGTATGATACGAGCCAACCCTAAAGCCTTTTTTGTACTTGTG  745

seq1  CCAAGTGGTTGCCAATCTTATTGTAAAGAACTAGAGCTAATGGTCTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGTTGCCAATCTTATTGTAAAGAACTAGAGCTAATGGTCTTGAA  795

seq1  ATCCATAACCCTGGAACCTTGCAAAAGTAATTTTCAATGTGTTACCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAACCCTGGAACCTTGCAAAAGTAATTTTCAATGTGTTACCATAT  845

seq1  TTTGTGAATAACTTTGGAATAGGCTTGTTTTGTTGAAACAGATATTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATAACTTTGGAATAGGCTTGTTTTGTTGAAACAGATATTTTAA  895

seq1  CACAAAACTCTAGTTCATTCTACATACTCCACAAACTATTAGGGTTGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACTCTAGTTCATTCTACATACTCCACAAACTATTAGGGTTGACT  945

seq1  GGGTTCATATTAACTGATCTCAAGTTACATATTAAGAAGTAATTTTGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCATATTAACTGATCTCAAGTTACATATTAAGAAGTAATTTTGAGA  995

seq1  ATGAGTTTCATGAGCCAATAAAAATAAACCTGAGATGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTCATGAGCCAATAAAAATAAACCTGAGATGAATTC  1037

seq1: chr1_171614959_171616097
seq2: B6Ng01-303C14.g_65_1211

seq1  GAATTCCTTGCATTAACATAGGCTATTGCCTCTCAGAGTTGATATAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCATTAACATAGGCTATTGCCTCTCAGAGTTGATATAGTTA  50

seq1  TGAAAGCGTTCATTAAATCAAATTTTCTTCAGTAGAAATAAACCCTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCGTTCATTAAATCAAATTTTCTTCAGTAGAAATAAACCCTATAC  100

seq1  AAGCTGCTGTTCAATATTTTCTCATTAGCAAGTATTTATTCACTCAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTGTTCAATATTTTCTCATTAGCAAGTATTTATTCACTCAAAAT  150

seq1  AATTTTTAAATTATGTTATTTATTAGTAATGCATGCAGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAATTATGTTATTTATTAGTAATGCATGCAGTGTGTGTGTGTG  200

seq1  TGTGTGTGTACATGCACGCATGTGGGGAGATCGGAGGGCAACTTTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTACATGCACGCATGTGGGGAGATCGGAGGGCAACTTTCATGA  250

seq1  GTTGGTTCTCTCTTTTCACTAAGGGTTCTGGAACAGAATTCGGGGCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTCTCTCTTTTCACTAAGGGTTCTGGAACAGAATTCGGGGCATCA  300

seq1  GGTTTACACAGCAAATACCTTTACCAGCTCAGCCATCTCACTGGCCCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACACAGCAAATACCTTTACCAGCTCAGCCATCTCACTGGCCCTAA  350

seq1  ACATGATTTTTAATCATTTGGGAGGTCCTTGACTTTGTTCTTAAAATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTTTTAATCATTTGGGAGGTCCTTGACTTTGTTCTTAAAATACA  400

seq1  TCAGATTCTTATGAGTTTTGCCTTCAGTTCTGAAACAGGAGCCATCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCTTATGAGTTTTGCCTTCAGTTCTGAAACAGGAGCCATCTGTT  450

seq1  TTTGTTTATTAGGTCTATAGGGCACATAGCAAGTATGTTGATCTTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTAGGTCTATAGGGCACATAGCAAGTATGTTGATCTTTAAAA  500

seq1  CCAAAAATAGATTGTGCATGGGGACTTGCATAATTCCACCCTAGCATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATAGATTGTGCATGGGGACTTGCATAATTCCACCCTAGCATCAC  550

seq1  CAGGGACATGGATTCTCCCATATGAGCATTTTTAAGAGCAAACAGGGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACATGGATTCTCCCATATGAGCATTTTTAAGAGCAAACAGGGACG  600

seq1  AAGCCCAGTCTGTGCAGCACAGTCTTTATTTGGGTTCTCTTTTCCCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGTCTGTGCAGCACAGTCTTTATTTGGGTTCTCTTTTCCCAAGA  650

seq1  GTTGCAAAAGGTCAGAGCATTTCCTCAGACACCCCGTGGGCTGGACTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAAAGGTCAGAGCATTTCCTCAGACACCCCGTGGGCTGGACTGTC  700

seq1  TCGAGGCACGAAGCAGCTAGCTCCAGGCTCAGCCATTGGTTCCCATCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCACGAAGCAGCTAGCTCCAGGCTCAGCCATTGGTTCCCATCTTC  750

seq1  ACAGTTGGCTTTGGCTCTCTTCCTTTGCTTTCTAGTTTTCTTCCTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGCTTTGGCTCTCTTCCTTTGCTTTCTAGTTTTCTTCCTTCTGT  800

seq1  GTCATGGGTCCAAATTCTCACCGTCTCACTGACGGGCAGACAATGATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGGTCCAAATTCTCACCGTCTCACTGACGGGCAGACAATGATCAT  850

seq1  AAAATGCGTGATATAAGAGCTATTCTTTATTCCTGTACTCTTTATGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCGTGATATAAGAGCTATTCTTTATTCCTGTACTCTTTATGTTAT  900

seq1  TCCAAGAAATTTGCATATATTGGTCTACTTAGTGATTGCAATAATCTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAATTTGCATATATTGGTCTACTTAGTGATTGCAATAATCTCAT  950

seq1  GACTTAGGTGCAACAAGTAACTCTA-TTTTTCAG--AAATA-GGTAGTTT  996
      ||||||||||||||||||||||||| ||||||||  ||||| ||||||||
seq2  GACTTAGGTGCAACAAGTAACTCTATTTTTTCAGGAAAATAGGGTAGTTT  1000

seq1  GTCTAT-GGCATAAAATACAACAAAAACAAAATTGAGGTATTCAC-TTTT  1044
      |||||| ||||| |||||| |||||||| ||| ||| ||| |||| ||||
seq2  GTCTATGGGCAT-AAATAC-ACAAAAAC-AAAGTGA-GTA-TCACTTTTT  1045

seq1  CTTTAAAGTTCATGTTCTGCTGGAT-GTGCACG-CCTTTAA-TCCCA-GT  1090
      |||||||||||||| |||||||||| ||||||| ||||||| ||||| ||
seq2  CTTTAAAGTTCATG-TCTGCTGGATGGTGCACGCCCTTTAACTCCCAGGT  1094

seq1  TCT--CAGGAGCAGAGGCA--GGCAGATCTTTGAG-TTCAAGGCCAGTCT  1135
      |||   ||||||||| |||  |||||||| ||||| ||||||| ||||||
seq2  TCTTCAAGGAGCAGAAGCAAGGGCAGATC-TTGAGTTTCAAGGACAGTCT  1143

seq1  TGTC  1139
      ||||
seq2  TGTC  1147