BAC Information

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BAC

Clone NameB6Ng01-304C06
Chromosome1 (Build37)
Map Location 196,866,272 - 196,867,440
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623172, Plxna2, Cd34
Downstream geneCd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304C06.bB6Ng01-304C06.g
ACCGA097769GA097770
length1,1921,158
definitionB6Ng01-304C06.b B6Ng01-304C06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaatggtgggtctagaaatctgagtctagggctttttgttttac
ctgaacacaaggatgtactcaaaaatttataggaactggatcaaaaaagg
aaacaggaactactttgagatcttctacagggcatatcaggaacaatttg
taaattaaaataaataacttcagtaacagatcatgtctcattgaataaat
aagttcacattgatatagacactaatttcatacaaaaaaatgaatgaata
aacaaatagaagagaaagcttttctttctttctttctttctttctttctt
tctttctttctttctttcttcctttcttctttctttcttgttgagaaagc
ttttctttgtagtcggatgccaattaataaatataaaagtaatggttgaa
tgtcatttgggagtcataagtgtactaataaagtaggacaaatttttttt
cacaaaaataggtaaattcctcttactggtttaataacattctcattatg
gtgaaatatatatatgatataatatatgtattttcttcacttacatttca
aatgctatcccctttcctagtttcctctctgaaaatcccctatccccttc
ccctgttccccaacccatctactcctgcttcctgaccctggcattcccct
atactggggcatagaaccttctcaagaccaagggcctctcttcccattga
tggccgactaggccatcctctgttacatatgcagctagagacacaagtcc
taccatgtgttttatttgattggtggtttagtccctgggagctctgtggg
tactggttagttcatattgttgttcttcctgtagggctgcagaccccttc
agctccttgggtcctttctcgagctcctttattgggaaccctgtgctcca
tccaaaggatgacagtgagcatccacttttgtatttgtcaggcactggca
gagcctctcagagacagctatatcaggttcctgccagctagctcttgttg
gcatccacaatagtgtctgggtttgttgtggtattatggatgatctctag
tgagggcagtctgtgatggtccatcttcagtcctctgctcgaactttgtt
ctctgaaattcttcattggatatattcccccgtcagaggatcaagtatca
caccttggggcttcccctccctctcttgaactctcactcatg
gaattcttcatggttgaagctcacctcgagtacagatttaattttttttt
gagtaggcattgcaggtggaggtaggtaatcagattaattttttccaagc
accatacttaatatgttcaactaagcattagatacgccctaaattcccaa
tgaactccaaacactagagttcctgtttatagtggttcagcattgcaatg
tacaacagttttcagagctattcctcacattggtcttaatacctgtactc
aggttttactgggttttgtccagtcatgtcgggaatcaaggtggatagtt
tttcagcattgtctgtgtggcaatatgttcacctgctgtatgtaaacaag
caagaagggaaattatgcattcacttgttccaccaagtattatatatccc
ccatatttaagaagtgaggaacaaaaaaattaattactaccttcacaaaa
gcagaagagagctactgttctacctgatctaaaataaaattaatgacaat
gtcacagtgaagaggcagaagactgtcagatacttaaacagtccacagga
gggcagcagtgctatgatctcaaaggctgacagctcattttagggtaatc
tcaggatgagcctagagagcctaagcatactgatgcataaggaagaatag
ttgtgtattggattcattcaattctgttcttaaataggcaaattattaaa
ctatgaaaaatccagtcttggttaaaatgttagctctctggtagaattgc
ttatttcccttaaaccttaaaattaggatgaatattcaggttctttttgc
ccctgagtctttctagcataattcagacaatttactgttggttactgtaa
aagtcctttctgtatattttatgccaattaaaaatatgctagagtctcat
gttaattttctaaaaatgcttagtcaatgcaattttcattctgtgtttat
attgttcataaacattactatatcatatttttaaaactacaatttatcat
tgcttatttgacagacatcatacttttaagcaaacagttaatattctgtt
atgactgttttctccagtgctaagatgattcaagatcttgtacatgctga
gcagccttctgctgagctcatcccaatccatgacaaccttaagctcaagt
ctttgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196866272_196867440
seq2: B6Ng01-304C06.g_68_1225

seq1  GAATTCTTCATGGTTGAAGCTCACCTCGAGTACAGATTTAATTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGGTTGAAGCTCACCTCGAGTACAGATTTAATTTTTTTTT  50

seq1  GAGTAGGCATTGCAGGTGGAGGTAGGTAATCAGATTAATTTTTTCCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGCATTGCAGGTGGAGGTAGGTAATCAGATTAATTTTTTCCAAGC  100

seq1  ACCATACTTAATATGTTCAACTAAGCATTAGATACGCCCTAAATTCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTTAATATGTTCAACTAAGCATTAGATACGCCCTAAATTCCCAA  150

seq1  TGAACTCCAAACACTAGAGTTCCTGTTTATAGTGGTTCAGCATTGCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCAAACACTAGAGTTCCTGTTTATAGTGGTTCAGCATTGCAATG  200

seq1  TACAACAGTTTTCAGAGCTATTCCTCACATTGGTCTTAATACCTGTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGTTTTCAGAGCTATTCCTCACATTGGTCTTAATACCTGTACTC  250

seq1  AGGTTTTACTGGGTTTTGTCCAGTCATGTCGGGAATCAAGGTGGATAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTACTGGGTTTTGTCCAGTCATGTCGGGAATCAAGGTGGATAGTT  300

seq1  TTTCAGCATTGTCTGTGTGGCAATATGTTCACCTGCTGTATGTAAACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCATTGTCTGTGTGGCAATATGTTCACCTGCTGTATGTAAACAAG  350

seq1  CAAGAAGGGAAATTATGCATTCACTTGTTCCACCAAGTATTATATATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGGAAATTATGCATTCACTTGTTCCACCAAGTATTATATATCCC  400

seq1  CCATATTTAAGAAGTGAGGAACAAAAAAATTAATTACTACCTTCACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTAAGAAGTGAGGAACAAAAAAATTAATTACTACCTTCACAAAA  450

seq1  GCAGAAGAGAGCTACTGTTCTACCTGATCTAAAATAAAATTAATGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAGAGCTACTGTTCTACCTGATCTAAAATAAAATTAATGACAAT  500

seq1  GTCACAGTGAAGAGGCAGAAGACTGTCAGATACTTAAACAGTCCACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTGAAGAGGCAGAAGACTGTCAGATACTTAAACAGTCCACAGGA  550

seq1  GGGCAGCAGTGCTATGATCTCAAAGGCTGACAGCTCATTTTAGGGTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCAGTGCTATGATCTCAAAGGCTGACAGCTCATTTTAGGGTAATC  600

seq1  TCAGGATGAGCCTAGAGAGCCTAAGCATACTGATGCATAAGGAAGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGAGCCTAGAGAGCCTAAGCATACTGATGCATAAGGAAGAATAG  650

seq1  TTGTGTATTGGATTCATTCAATTCTGTTCTTAAATAGGCAAATTATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTGGATTCATTCAATTCTGTTCTTAAATAGGCAAATTATTAAA  700

seq1  CTATGAAAAATCCAGTCTTGGTTAAAATGTTAGCTCTCTGGTAGAATTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAAATCCAGTCTTGGTTAAAATGTTAGCTCTCTGGTAGAATTGC  750

seq1  TTATTTCCCTTAAACCTTAAAATTAGGATGAATATTCAGGTTCTTTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCCTTAAACCTTAAAATTAGGATGAATATTCAGGTTCTTTTTGC  800

seq1  CCCTGAGTCTTTCTAGCATAATTCAGACAATTTACTGTTGGTTACTGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTCTTTCTAGCATAATTCAGACAATTTACTGTTGGTTACTGTAA  850

seq1  AAGTCCTTTCTGTATATTTTATGCCAATTAAAAATATGCTAGAGTCTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTTCTGTATATTTTATGCCAATTAAAAATATGCTAGAGTCTCAT  900

seq1  GTTAATTTTCTAAAAATGCTTAGTCAATGCAATTTTCATTCTGTGTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTTCTAAAAATGCTTAGTCAATGCAATTTTCATTCTGTGTTTAT  950

seq1  ATTGTTCATAAACATTACTATATCATA-TTTTAAAACTACAATTTATCAT  999
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTGTTCATAAACATTACTATATCATATTTTTAAAACTACAATTTATCAT  1000

seq1  TGCTTATTTTGACAGACATCAATACTTTTAAGCAAACAGTTAATAATCTG  1049
      |||||| ||||||||||||| |||||||||||||||||||||||| ||||
seq2  TGCTTA-TTTGACAGACATC-ATACTTTTAAGCAAACAGTTAATATTCTG  1048

seq1  TTAATGACTGTTTTCTTCCCAGTGCTAAGGAATGAATTCAGGGTCTTGTA  1099
      || |||||||||||||  |||||||||||  ||| ||||| | |||||||
seq2  TT-ATGACTGTTTTCT--CCAGTGCTAAG--ATG-ATTCAAGATCTTGTA  1092

seq1  CATGCTGAGCAAGCTTTCTGCTGAGCTTCATCCCCAACCCATGAACAACT  1149
      |||||||||| ||| ||||||||||| |||| ||||| ||||| ||||| 
seq2  CATGCTGAGC-AGCCTTCTGCTGAGC-TCAT-CCCAATCCATG-ACAACC  1138

seq1  TTAAGTTCAAGTCTTTGAAA  1169
      ||||| ||||||||||||||
seq2  TTAAGCTCAAGTCTTTGAAA  1158