BAC Information

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BAC

Clone NameB6Ng01-304F04
Chromosome1 (Build37)
Map Location 113,301,464 - 113,302,596
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304F04.bB6Ng01-304F04.g
ACCGA097909GA097910
length1,1491,140
definitionB6Ng01-304F04.b B6Ng01-304F04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaaagacgcaacaaaccagaatcttctgc
ggcaaaactttattgcttacatctttgggagccaggagggcaagcgccca
gcgcccagccccaaaaacgaaagccccttcaataatgaaaccgaaacccc
ttccctctttaggagagttatatttcgcctaggacgcatcactccctgat
tggctgcagcccatggccgagctgacgttcacgggaaaggtagagtacaa
gtagtcataaaatacccttggctcatgcgcagattatttgtttaccactt
agaacacaggatgtcagcgccatcttgtgacggcgaatgtgggggcggct
cccaacactagagctttcagatgtgctgttaagtttatagtgtagggtct
ctccattttcttttttttaattaggtattttcctcatttacatttccaat
actatcccaaaagtcccccataacctccccccactcccctcccccccact
ccaaatttttggccctggcgttcccctgtactggggcatataaagtttgc
aagtccaataggcctctctttccagtgatgggcgactaggccatcttttg
atacatatgcagctagagacaagagctccggggtactggtttagttcata
atgttgttccacctatagggttgcagatcccttttagctcctagggtact
ttctctagctcctccatttgggggcctgtgatccatctaatagctgacta
tgaacatcacgcagttagtgctataagcgcgtgtgggttcatttctgtgt
gcctttatgtgtggtgggttcatttccgaagtctgcaagtcttttttttt
tattagatatttgcttcattatatttcagatgtattccgttcgagttttc
cactggagattcctatcccccctcctgactcccagccaatcccactctca
tgtctagtactgtacattcttcttaactggagcaatagaaccccctcca
gaattcactgagacaggtgataggctattacagtattttcactcctactt
gaagaacttgaggtttactgtctgagcacacatatgatagtgcatgattg
gaagacattcttggaaaggcagattgagttttccataggactagttaatc
atagaatattcttttgggtggggggctgaaatgaaatgactgatatatga
tgattctattctctgttttctagtgaagactatgctgagatatatgggaa
catatgcgaatatttgaatatttttttaaaaaatcacacatttatgagaa
gtcttaaggatagtactattttcatcacacatattgttaggtacaactag
aaggacctatgagctggctcattgactaagggcccttgttccaagtcttc
caaactgagttaggttgtcagagcacacaagtttgaagaatagatgccat
tcttggaagtaacacactgacaaccaaacctgaaatcttccatacaaata
tgtatacatagtcacagacatgtaacaaatatatgtgtaaataaacaaaa
caataacactgtaagaaataaaacaagttttcaaattatttgttttttag
tcatgtggaagactattagactgtgaaaagatatttttttattgccttta
cactgtaacttatactataagttctattgagtaaaacccgtaagacacag
atgctatatataggaactgggaaaaaataagtagagtagacttcactggg
aagggagataagggacaatacagaggggtcaaaaatgaaagggatcaaaa
acactgagtgattcttttaaatgctatggagaatttgttttaagggatct
tgaggaaaagaaaattagaaataaatttaaattgtacttatgtttccatg
ggtgtgatgctcctaaccatacactatctaacaaaacccccaatgctagg
ctcaatatgaagaatctggagagaccattatatggcatagctcattcttt
acaattccagtaaaagaagataatattatagttaccaagtattaccataa
cacttcaacacttgaccttgaaacagtaagtagggttttggaactgggaa
ttctcaaggctagagcccatattcctgaggaactgtgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113301464_113302596
seq2: B6Ng01-304F04.g_68_1207 (reverse)

seq1  TTGCACAGTTTCCTCTGGAAATATGGGCTCTAGCCCTGGAGAATTTCCAA  50
      |||||||| |||||| || |||||||||||||| ||| ||||||| ||| 
seq2  TTGCACAG-TTCCTCAGG-AATATGGGCTCTAG-CCTTGAGAATTCCCAG  47

seq1  TTC--AAAACCTACTTTACTG-TTCAAAGTCAAGTGTTTGAAGTG-TATG  96
      |||  ||| ||||| |||||| ||||| |||||||| |||||||| ||||
seq2  TTCCAAAACCCTAC-TTACTGTTTCAAGGTCAAGTG-TTGAAGTGTTATG  95

seq1  GT-ATACTTGGT-ACTATAATATTATCTTCTTTTACTGGAA-TGTAA--G  141
      || ||||||||| |||||||||||||||||||||||||||| |||||   
seq2  GTAATACTTGGTAACTATAATATTATCTTCTTTTACTGGAATTGTAAAGA  145

seq1  ATGAGCTATGCCATAT-ATGGTCTCT-CAGATTCTTCATA-TGAGCCTAG  188
      |||||||||||||||| ||||||||| ||||||||||||| |||||||||
seq2  ATGAGCTATGCCATATAATGGTCTCTCCAGATTCTTCATATTGAGCCTAG  195

seq1  CATTGGGGGTTTTGTTAGATAGTGTATGGTTAGGAGCATCACACCCATGG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGGTTTTGTTAGATAGTGTATGGTTAGGAGCATCACACCCATGG  245

seq1  AAACATAAGTACAATTTAAATTTATTTCTAATTTTCTTTTCCTCAAGATC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAGTACAATTTAAATTTATTTCTAATTTTCTTTTCCTCAAGATC  295

seq1  CCTTAAAACAAATTCTCCATAGCATTTAAAAGAATCACTCAGTGTTTTTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAACAAATTCTCCATAGCATTTAAAAGAATCACTCAGTGTTTTTG  345

seq1  ATCCCTTTCATTTTTGACCCCTCTGTATTGTCCCTTATCTCCCTTCCCAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCATTTTTGACCCCTCTGTATTGTCCCTTATCTCCCTTCCCAG  395

seq1  TGAAGTCTACTCTACTTATTTTTTCCCAGTTCCTATATATAGCATCTGTG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTACTCTACTTATTTTTTCCCAGTTCCTATATATAGCATCTGTG  445

seq1  TCTTACGGGTTTTACTCAATAGAACTTATAGTATAAGTTACAGTGTAAAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACGGGTTTTACTCAATAGAACTTATAGTATAAGTTACAGTGTAAAG  495

seq1  GCAATAAAAAAATATCTTTTCACAGTCTAATAGTCTTCCACATGACTAAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAAAAAATATCTTTTCACAGTCTAATAGTCTTCCACATGACTAAA  545

seq1  AAACAAATAATTTGAAAACTTGTTTTATTTCTTACAGTGTTATTGTTTTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAATTTGAAAACTTGTTTTATTTCTTACAGTGTTATTGTTTTG  595

seq1  TTTATTTACACATATATTTGTTACATGTCTGTGACTATGTATACATATTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACACATATATTTGTTACATGTCTGTGACTATGTATACATATTT  645

seq1  GTATGGAAGATTTCAGGTTTGGTTGTCAGTGTGTTACTTCCAAGAATGGC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAAGATTTCAGGTTTGGTTGTCAGTGTGTTACTTCCAAGAATGGC  695

seq1  ATCTATTCTTCAAACTTGTGTGCTCTGACAACCTAACTCAGTTTGGAAGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCTTCAAACTTGTGTGCTCTGACAACCTAACTCAGTTTGGAAGA  745

seq1  CTTGGAACAAGGGCCCTTAGTCAATGAGCCAGCTCATAGGTCCTTCTAGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACAAGGGCCCTTAGTCAATGAGCCAGCTCATAGGTCCTTCTAGT  795

seq1  TGTACCTAACAATATGTGTGATGAAAATAGTACTATCCTTAAGACTTCTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTAACAATATGTGTGATGAAAATAGTACTATCCTTAAGACTTCTC  845

seq1  ATAAATGTGTGATTTTTTAAAAAAATATTCAAATATTCGCATATGTTCCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTGTGATTTTTTAAAAAAATATTCAAATATTCGCATATGTTCCC  895

seq1  ATATATCTCAGCATAGTCTTCACTAGAAAACAGAGAATAGAATCATCATA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTCAGCATAGTCTTCACTAGAAAACAGAGAATAGAATCATCATA  945

seq1  TATCAGTCATTTCATTTCAGCCCCCCACCCAAAAGAATATTCTATGATTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTCATTTCATTTCAGCCCCCCACCCAAAAGAATATTCTATGATTA  995

seq1  ACTAGTCCTATGGAAAACTCAATCTGCCTTTCCAAGAATGTCTTCCAATC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCCTATGGAAAACTCAATCTGCCTTTCCAAGAATGTCTTCCAATC  1045

seq1  ATGCACTATCATATGTGTGCTCAGACAGTAAACCTCAAGTTCTTCAAGTA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTATCATATGTGTGCTCAGACAGTAAACCTCAAGTTCTTCAAGTA  1095

seq1  GGAGTGAAAATACTGTAATAGCCTATCACCTGTCTCAGTGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAAATACTGTAATAGCCTATCACCTGTCTCAGTGAATTC  1140