BAC Information

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BAC

Clone NameB6Ng01-304P03
Chromosome1 (Build37)
Map Location 79,434,620 - 79,606,422
singlet/doubletdoublet
Overlap geneScg2, Ap1s3
Upstream geneFarsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneWdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304P03.bB6Ng01-304P03.g
ACCGA098362GA098363
length1,1391,101
definitionB6Ng01-304P03.b B6Ng01-304P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,434,620 - 79,435,761)(79,605,328 - 79,606,422)
sequence
gaattcttcctacttaaaaaagaaaagaaaagaaaaaaaggtaaaaaaac
cttcattcatttttttctccaatatttttaaaatctcacagatggattag
taagaggaatcacttgtacacttcctgcttggcattgctgataattggag
aagctatttcaatccttgaaatttcttttgtaaacaaatgcatgtaaata
aatctataagtttattcatgtcttcgatacatcctggtttgtggcaaata
agcaaagttatgtgaaaatgatttcctgttagattaagcatctagatatt
gcttaacagatcttgctgataatgaatgctataatttttttagaactgtc
aataggttgtaggtatagaaacttcctttgcttacatacataggctgatt
aagattaccaccaagtaggctatttaagcatacacagaacatttccaaaa
taaacaaatgctttcttcaagaaactgtacccataaacttgtgagtgata
taatgaagtttaaataaaaagggttctatatgtatataatatatttcata
ttacttcaggattgatttagctttggcaatcagctttcactactgtcatg
ttaaatgttatcttgaaagccatattgagtgcatttgctttaagatcatt
atcttgacatactcttaacacatcttagcatatggattacgtgattatct
gagaacccactactttgaagggaggtttttctgtagaattagagaaagaa
tgcacattgcagtttgaaccacagcctaacatgcatggccgactcgtcgc
tgactctggtttactttagatgacaccgttattgcttctaacactcaaag
gacttcatttctctaggagctgctcttgcaagcagtgaagatggctttaa
tagttctaacaccttacacagtgtttgatttaaaatttaattttctgaag
tctaaatggtagggaacattgtgtctcctcagacagctattattgatgcc
ccttacagtaaaaacatcttcctatgaaatcagctggaacattgaccact
gaccatcacacatggtggagttaatctgatcaaacactccaccctagtag
ggataaacaaataaatttgctcaatcaacctcttcagca
gaattctacttgtaaccaggaggtacaaacacttaaaagatgaagacagg
aaagtaaaacgctggggcttattagcaaatttagtaactgaaagagcgtc
tggatgctttggagaaactctcttccaaaaagcatggcagaaatcctcca
gactcatgacatgtttatcccctctgattgggcaataggtttaatgaaga
ggttctgcacagtatagaaaacaatgtatatgctacattgtctacttggg
gcttctatagcccgtgtgcgtgcgcgcgcgtgcgcacacacacacacaca
cacacacctacatgcagtcctcacaaccattttagacacatgaactttaa
atctgtagtggtgtctccccattccaacatctctcttctcaaacatccac
tgcctggtcaagcttagcccttttcaattaaaagtgatacatttacaacc
atgtgtacatgtagacaaatgatattcaaacttgtagagtcgccttcagc
agagtgcaaatgtttatgtctctgtatgtttttgaattttttttcaatct
tgcaaaatgaatcaaaaagaatgaaaaacaaatcatggtctgctaacgcc
tatggcttgaagggaatattgctcttagtcactgttctctttcagacaat
ggaagaatacatgaacaagcccacgttttaagtgtacagtctacttgaag
attctgagcgctccatgctgtgaacctacaaacaagcaactccttgcatc
cagtctccgcacggcctctggcaccatgccaaaaactacttaaagggatt
ctgtgttagctagcaaaacttaaagttgttagcatatgtccttatggttg
ctacatgtctgtattatactgtgtatcaatactcactgggggctctaggt
gtttcacataattgctgcagattgaatagctccttgctgtgttttaagcc
cttgtggtactttaaaggtaatttcaaattattgggttgcaatatgaatc
ctttttgttgccattttgatctcctacttgtagactgacactgctttggt
gaataacacacaatttgaatgtaagtatatttttatataatggaatgcct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79434620_79435761
seq2: B6Ng01-304P03.b_45_1183

seq1  GAATTCTTCCTACTTAAAAAAGAAAAGAAAAGAAAAAAAGGTAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTACTTAAAAAAGAAAAGAAAAGAAAAAAAGGTAAAAAAAC  50

seq1  CTTCATTCATTTTTTTCTCCAATATTTTTAAAATCTCACAGATGGATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCATTTTTTTCTCCAATATTTTTAAAATCTCACAGATGGATTAG  100

seq1  TAAGAGGAATCACTTGTACACTTCCTGCTTGGCATTGCTGATAATTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAATCACTTGTACACTTCCTGCTTGGCATTGCTGATAATTGGAG  150

seq1  AAGCTATTTCAATCCTTGAAATTTCTTTTGTAAACAAATGCATGTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTCAATCCTTGAAATTTCTTTTGTAAACAAATGCATGTAAATA  200

seq1  AATCTATAAGTTTATTCATGTCTTCGATACATCCTGGTTTGTGGCAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAAGTTTATTCATGTCTTCGATACATCCTGGTTTGTGGCAAATA  250

seq1  AGCAAAGTTATGTGAAAATGATTTCCTGTTAGATTAAGCATCTAGATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTTATGTGAAAATGATTTCCTGTTAGATTAAGCATCTAGATATT  300

seq1  GCTTAACAGATCTTGCTGATAATGAATGCTATAATTTTTTTAGAACTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACAGATCTTGCTGATAATGAATGCTATAATTTTTTTAGAACTGTC  350

seq1  AATAGGTTGTAGGTATAGAAACTTCCTTTGCTTACATACATAGGCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTGTAGGTATAGAAACTTCCTTTGCTTACATACATAGGCTGATT  400

seq1  AAGATTACCACCAAGTAGGCTATTTAAGCATACACAGAACATTTCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTACCACCAAGTAGGCTATTTAAGCATACACAGAACATTTCCAAAA  450

seq1  TAAACAAATGCTTTCTTCAAGAAACTGTACCCATAAACTTGTGAGTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATGCTTTCTTCAAGAAACTGTACCCATAAACTTGTGAGTGATA  500

seq1  TAATGAAGTTTAAATAAAAAGGGTTCTATATGTATATAATATATTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGTTTAAATAAAAAGGGTTCTATATGTATATAATATATTTCATA  550

seq1  TTACTTCAGGATTGATTTAGCTTTGGCAATCAGCTTTCACTACTGTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAGGATTGATTTAGCTTTGGCAATCAGCTTTCACTACTGTCATG  600

seq1  TTAAATGTTATCTTGAAAGCCATATTGAGTGCATTTGCTTTAAGATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTATCTTGAAAGCCATATTGAGTGCATTTGCTTTAAGATCATT  650

seq1  ATCTTGACATACTCTTAACACATCTTAGCATATGGATTACGTGATTATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACATACTCTTAACACATCTTAGCATATGGATTACGTGATTATCT  700

seq1  GAGAACCCACTACTTTGAAGGGAGGTTTTTCTGTAGAATTAGAGAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCACTACTTTGAAGGGAGGTTTTTCTGTAGAATTAGAGAAAGAA  750

seq1  TGCACATTGCAGTTTGAACCACAGCCTAACATGCATGGCCGACTCGTCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTGCAGTTTGAACCACAGCCTAACATGCATGGCCGACTCGTCGC  800

seq1  TGACTCTGGTTTACTTTAGATGACACCGTTATTGCTTCTAACACTCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGGTTTACTTTAGATGACACCGTTATTGCTTCTAACACTCAAAG  850

seq1  GACTTCATTTCTCTAGGAGCTGCTCTTGCAAGCAGTGAAGATGGCTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATTTCTCTAGGAGCTGCTCTTGCAAGCAGTGAAGATGGCTTTAA  900

seq1  TAGTTCTAACACCTTACACAGTGTTTGATTTAAAATTTAATTTTCTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTAACACCTTACACAGTGTTTGATTTAAAATTTAATTTTCTGAAG  950

seq1  TCTAAATGGTA-GGAACATTGTGTCTCCTCAGACAGCTATTATTGATGCC  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGGTAGGGAACATTGTGTCTCCTCAGACAGCTATTATTGATGCC  1000

seq1  CCTTACAGTAAAAAACATCTTTCCTATGAAATCAGCTGGAACATTGA-CA  1048
      ||||||||| ||||||||| ||||||||||||||||||||||||||| ||
seq2  CCTTACAGT-AAAAACATC-TTCCTATGAAATCAGCTGGAACATTGACCA  1048

seq1  CTGAACCATCAACACATG--TGAGTAAATCTGATTCAAACAACCCA-CCT  1095
      ||| |||||| |||||||   |||| ||||||| |||||||  ||| |||
seq2  CTG-ACCATC-ACACATGGTGGAGTTAATCTGA-TCAAACACTCCACCCT  1095

seq1  AGTTAGGATAAACAAAAATAAATTTGCTTCAATCAACCTCTTCAGCA  1142
      |||  ||||||||  |||||||||||| |||||||||||||||||||
seq2  AGTAGGGATAAAC--AAATAAATTTGC-TCAATCAACCTCTTCAGCA  1139

seq1: chr1_79605328_79606422
seq2: B6Ng01-304P03.g_69_1169 (reverse)

seq1  AAGGCATT-CATTATAT-AAAATATACTTTACATTCAAAATTGTGTGTTA  48
      |||||||| |||||||| ||||||||| |||||||| |||||||||||||
seq2  AAGGCATTCCATTATATAAAAATATAC-TTACATTC-AAATTGTGTGTTA  48

seq1  -TCA-CAAAGCAGTTGTCAGTCTACAGGTAGAAGATC-AAATGGCAACAA  95
       ||| |||||||| |||||||||||| |||| ||||| ||||||||||||
seq2  TTCACCAAAGCAG-TGTCAGTCTACAAGTAGGAGATCAAAATGGCAACAA  97

seq1  AAAGGA-TCATATTGCAA-CCAAT-ATTTGAAATTACCTTAAAAGTACCA  142
      |||||| ||||||||||| ||||| ||||||||||||||| |||||||||
seq2  AAAGGATTCATATTGCAACCCAATAATTTGAAATTACCTTTAAAGTACCA  147

seq1  CAAGGGCTTAAAACACAGCAAGGAGCTATTCAATCTGCAGCAATTATGTG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTTAAAACACAGCAAGGAGCTATTCAATCTGCAGCAATTATGTG  197

seq1  AAACACCTAGAG-CCCCAGTGAGTATTGATACACAGTATAATACAGACAT  241
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAACACCTAGAGCCCCCAGTGAGTATTGATACACAGTATAATACAGACAT  247

seq1  GTAGCAACCATAAGGACATATGCTAACAACTTTAAGTTTTGCTAGCTAAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAACCATAAGGACATATGCTAACAACTTTAAGTTTTGCTAGCTAAC  297

seq1  ACAGAATCCCTTTAAGTAGTTTTTGGCATGGTGCCAGAGGCCGTGCGGAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCCCTTTAAGTAGTTTTTGGCATGGTGCCAGAGGCCGTGCGGAG  347

seq1  ACTGGATGCAAGGAGTTGCTTGTTTGTAGGTTCACAGCATGGAGCGCTCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGCAAGGAGTTGCTTGTTTGTAGGTTCACAGCATGGAGCGCTCA  397

seq1  GAATCTTCAAGTAGACTGTACACTTAAAACGTGGGCTTGTTCATGTATTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCAAGTAGACTGTACACTTAAAACGTGGGCTTGTTCATGTATTC  447

seq1  TTCCATTGTCTGAAAGAGAACAGTGACTAAGAGCAATATTCCCTTCAAGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGTCTGAAAGAGAACAGTGACTAAGAGCAATATTCCCTTCAAGC  497

seq1  CATAGGCGTTAGCAGACCATGATTTGTTTTTCATTCTTTTTGATTCATTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCGTTAGCAGACCATGATTTGTTTTTCATTCTTTTTGATTCATTT  547

seq1  TGCAAGATTGAAAAAAAATTCAAAAACATACAGAGACATAAACATTTGCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATTGAAAAAAAATTCAAAAACATACAGAGACATAAACATTTGCA  597

seq1  CTCTGCTGAAGGCGACTCTACAAGTTTGAATATCATTTGTCTACATGTAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGAAGGCGACTCTACAAGTTTGAATATCATTTGTCTACATGTAC  647

seq1  ACATGGTTGTAAATGTATCACTTTTAATTGAAAAGGGCTAAGCTTGACCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTGTAAATGTATCACTTTTAATTGAAAAGGGCTAAGCTTGACCA  697

seq1  GGCAGTGGATGTTTGAGAAGAGAGATGTTGGAATGGGGAGACACCACTAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGATGTTTGAGAAGAGAGATGTTGGAATGGGGAGACACCACTAC  747

seq1  AGATTTAAAGTTCATGTGTCTAAAATGGTTGTGAGGACTGCATGTAGGTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAAGTTCATGTGTCTAAAATGGTTGTGAGGACTGCATGTAGGTG  797

seq1  TGTGTGTGTGTGTGTGTGTGCGCACGCGCGCGCACGCACACGGGCTATAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGCGCACGCGCGCGCACGCACACGGGCTATAG  847

seq1  AAGCCCCAAGTAGACAATGTAGCATATACATTGTTTTCTATACTGTGCAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCAAGTAGACAATGTAGCATATACATTGTTTTCTATACTGTGCAG  897

seq1  AACCTCTTCATTAAACCTATTGCCCAATCAGAGGGGATAAACATGTCATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTTCATTAAACCTATTGCCCAATCAGAGGGGATAAACATGTCATG  947

seq1  AGTCTGGAGGATTTCTGCCATGCTTTTTGGAAGAGAGTTTCTCCAAAGCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGAGGATTTCTGCCATGCTTTTTGGAAGAGAGTTTCTCCAAAGCA  997

seq1  TCCAGACGCTCTTTCAGTTACTAAATTTGCTAATAAGCCCCAGCGTTTTA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACGCTCTTTCAGTTACTAAATTTGCTAATAAGCCCCAGCGTTTTA  1047

seq1  CTTTCCTGTCTTCATCTTTTAAGTGTTTGTACCTCCTGGTTACAAGTAGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGTCTTCATCTTTTAAGTGTTTGTACCTCCTGGTTACAAGTAGA  1097

seq1  ATTC  1095
      ||||
seq2  ATTC  1101