BAC Information

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BAC

Clone NameB6Ng01-305C13
Chromosome1 (Build37)
Map Location 102,781,466 - 102,919,704
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C13.bB6Ng01-305C13.g
ACCGA098521GA098522
length1,0231,090
definitionB6Ng01-305C13.b B6Ng01-305C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,919,111 - 102,919,704)(102,781,466 - 102,782,309)
sequence
gaattctttcccttgcctgtgtttatcttcctatagttgacagttgctgt
gttgctaggtcattctgaaaaaaaaatgtctgtctcctggatataagcag
agatgattcagttctttaaaacactctttcttttctttcccatttcttgg
tttctccttccttcttcccttttttcatccattcttgaataacccgatcc
ttatgtctggtgtctatgtctgagtactacagcaatgtctgaaaacagca
atgttgtctttgtgagtctccctgataaactaactacaggctgcctggct
ctaccttgacttttctttgaatcatctgctcagagtttcataactgacat
gtttctacagtctgcaaaggcagagacacccatatcaccaagacctggtt
tcttttctcagtattttttctctcaggccagtgtattacctatcctctga
cattttggtattgtaagtaaggataaatagagctatacctctgtcatatt
tatttgaattattcatagttaaatataatacttaaagcattgcttcttat
ttaatggtaagatggttagtgtaactcctgcaacttccctgtaacatggt
agcaattactactcccccctagtcttcaattgcatatttgttatttcctt
caagatctttatcaactgaattttgaacattgatattaataaagagaatc
tatctccaagaatccaggaactttggaatagagtagatttgtctctagaa
tattgtttactcccttctgagtcatcataagcatcaccttattatctata
ttttctgtgtgtagacatgtgtatgtatatgttagtggattgtatatgta
catgcatgcgtaaatgtccatgtatatgtgtgtaaggccacaggtccagg
acctgtctaccatgttttttgagataagtcactcactaaggtcctagggt
ttgacatactgataatctggttggctagactgccttctacttccttgtca
aagtcctggaattaataagcata

gaattccgctgtactgggacatataaagtttgcaataccaaggggcctct
cttcccaataatgaccaactaggccatcttctggtacatatggagctaga
gacatgagctctgggggtactaattaattcgtattgttgttccacctata
aggttgtagacaccttcatctccttgggtagtttccctagctcctccact
gggggccctgtgttccatcctgtagatgactgtaagcatccacttctgta
tttgccaggcactgacatggcctcacaagagacagctgtatcagggtcct
ttcagcaaaatcttgttggcatatgcaatagtatctgcatttggtggttg
attatgagatggatctccagttgggacagtctcttgatggtcatcctttc
atcttggctccaaactttgtctctgtaactcctttgatgggtattttatt
ccctattctaggaaggaatgaaatatccatgcattggtcttcctccttct
tgattttattctgttttgcaaattctatcttggaaagaacagagatgttc
ctcaacagaggtatggatacagaaaatgtggtacatttacacaatggagt
actactcagctattaaaaacaatgaatttatgaaattcttaggcaaatgg
gtatctctggaggatatcatcctgagtgaggtaacccaatcacaaaagaa
gtcacttggtatgcactctctgataagtggacattagcaagtcttgtaaa
ttactgtgtcacatgatttttgtatgctttaggagagagttccaagaaga
atttaccatttaagaccaagaaatgtctggtgtattgcttatcttttccc
ctggtaaacaagaagctttctgttgggacactgagctttttctccctaga
gggtgtatctggagaaggagttaataaatgacacagttctattttccctt
tgctgttggagccataaacagaaaccacatcttgagtgcaaagcaaggga
aaattttgtcaaggggttatttgaaagaagtatgggagacatgtacgaag
aaagttgataagaagtgatacttcatttgctttatcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102919111_102919704
seq2: B6Ng01-305C13.b_48_641 (reverse)

seq1  TTACAGGGAAGTTGCAGGAGTTACACTAACCATCTTACCATTAAATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGAAGTTGCAGGAGTTACACTAACCATCTTACCATTAAATAAGA  50

seq1  AGCAATGCTTTAAGTATTATATTTAACTATGAATAATTCAAATAAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCTTTAAGTATTATATTTAACTATGAATAATTCAAATAAATATG  100

seq1  ACAGAGGTATAGCTCTATTTATCCTTACTTACAATACCAAAATGTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTATAGCTCTATTTATCCTTACTTACAATACCAAAATGTCAGAG  150

seq1  GATAGGTAATACACTGGCCTGAGAGAAAAAATACTGAGAAAAGAAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTAATACACTGGCCTGAGAGAAAAAATACTGAGAAAAGAAACCAG  200

seq1  GTCTTGGTGATATGGGTGTCTCTGCCTTTGCAGACTGTAGAAACATGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGTGATATGGGTGTCTCTGCCTTTGCAGACTGTAGAAACATGTCA  250

seq1  GTTATGAAACTCTGAGCAGATGATTCAAAGAAAAGTCAAGGTAGAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAACTCTGAGCAGATGATTCAAAGAAAAGTCAAGGTAGAGCCAG  300

seq1  GCAGCCTGTAGTTAGTTTATCAGGGAGACTCACAAAGACAACATTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGTAGTTAGTTTATCAGGGAGACTCACAAAGACAACATTGCTGT  350

seq1  TTTCAGACATTGCTGTAGTACTCAGACATAGACACCAGACATAAGGATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACATTGCTGTAGTACTCAGACATAGACACCAGACATAAGGATCG  400

seq1  GGTTATTCAAGAATGGATGAAAAAAGGGAAGAAGGAAGGAGAAACCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCAAGAATGGATGAAAAAAGGGAAGAAGGAAGGAGAAACCAAGA  450

seq1  AATGGGAAAGAAAAGAAAGAGTGTTTTAAAGAACTGAATCATCTCTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAAGAAAAGAAAGAGTGTTTTAAAGAACTGAATCATCTCTGCTT  500

seq1  ATATCCAGGAGACAGACATTTTTTTTTCAGAATGACCTAGCAACACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGGAGACAGACATTTTTTTTTCAGAATGACCTAGCAACACAGCA  550

seq1  ACTGTCAACTATAGGAAGATAAACACAGGCAAGGGAAAGAATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAACTATAGGAAGATAAACACAGGCAAGGGAAAGAATTC  594


seq1: chr1_102781466_102782309
seq2: B6Ng01-305C13.g_308_1159

seq1  TCCACTTCTGTATTTGCCAGGCACTGACATGGCCTCACAAGAGACAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTGTATTTGCCAGGCACTGACATGGCCTCACAAGAGACAGCTG  50

seq1  TATCAGGGTCCTTTCAGCAAAATCTTGTTGGCATATGCAATAGTATCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGTCCTTTCAGCAAAATCTTGTTGGCATATGCAATAGTATCTGC  100

seq1  ATTTGGTGGTTGATTATGAGATGGATCTCCAGTTGGGACAGTCTCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGGTTGATTATGAGATGGATCTCCAGTTGGGACAGTCTCTTGAT  150

seq1  GGTCATCCTTTCATCTTGGCTCCAAACTTTGTCTCTGTAACTCCTTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCCTTTCATCTTGGCTCCAAACTTTGTCTCTGTAACTCCTTTGAT  200

seq1  GGGTATTTTATTCCCTATTCTAGGAAGGAATGAAATATCCATGCATTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTTATTCCCTATTCTAGGAAGGAATGAAATATCCATGCATTGGT  250

seq1  CTTCCTCCTTCTTGATTTTATTCTGTTTTGCAAATTCTATCTTGGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTTCTTGATTTTATTCTGTTTTGCAAATTCTATCTTGGAAAGA  300

seq1  ACAGAGATGTTCCTCAACAGAGGTATGGATACAGAAAATGTGGTACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGTTCCTCAACAGAGGTATGGATACAGAAAATGTGGTACATTT  350

seq1  ACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTTATGAAATTC  400

seq1  TTAGGCAAATGGGTATCTCTGGAGGATATCATCCTGAGTGAGGTAACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAAATGGGTATCTCTGGAGGATATCATCCTGAGTGAGGTAACCCA  450

seq1  ATCACAAAAGAAGTCACTTGGTATGCACTCTCTGATAAGTGGACATTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAAGAAGTCACTTGGTATGCACTCTCTGATAAGTGGACATTAGC  500

seq1  AAGTCTTGTAAATTACTGTGTCACATGATTTTTGTATGCTTTAGGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGTAAATTACTGTGTCACATGATTTTTGTATGCTTTAGGAGAGA  550

seq1  GTTCCAAGAAGAATTTACCATTTAAGACCAAGAAATGTCTGGTGTATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGAAGAATTTACCATTTAAGACCAAGAAATGTCTGGTGTATTGC  600

seq1  TTATCTTTTCCCCTGGTAAACAAGAAGCTTTCTGTTGGGACACTGAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTCCCCTGGTAAACAAGAAGCTTTCTGTTGGGACACTGAGCTT  650

seq1  TTTCT-CCTAGAGGGTGTATCTGGAGAAGGAGTTAATAAATGACACAGTT  699
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTAGAGGGTGTATCTGGAGAAGGAGTTAATAAATGACACAGTT  700

seq1  CTATTTTCCCTTTGCTGTTGGAGCCATAAACAGAAACCCACATCTTGAGT  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTATTTTCCCTTTGCTGTTGGAGCCATAAACAGAAA-CCACATCTTGAGT  749

seq1  GCAAAGCAAGGGAAAA-TTTGTC-AGGGGTTATTTGAAAG-AGTAT-GGA  795
      |||||||||||||||| |||||| |||||||||||||||| ||||| |||
seq2  GCAAAGCAAGGGAAAATTTTGTCAAGGGGTTATTTGAAAGAAGTATGGGA  799

seq1  GACATGTACG-AGACAG-TGATA--GAGTGATAACTTCATTTGC-TTATC  840
      |||||||||| ||| || |||||   |||||| ||||||||||| |||||
seq2  GACATGTACGAAGAAAGTTGATAAGAAGTGAT-ACTTCATTTGCTTTATC  848

seq1  ATTG  844
      ||||
seq2  ATTG  852


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