BAC Information

Click to search

BAC

Clone NameB6Ng01-305H06
Chromosome1 (Build37)
Map Location 155,276,145 - 155,277,278
singlet/doubletsinglet
Overlap gene1700012A16Rik
Upstream geneGlt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058
Downstream geneDhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305H06.bB6Ng01-305H06.g
ACCGA098739GA098740
length1,2281,127
definitionB6Ng01-305H06.b B6Ng01-305H06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaacttgagtttgacctctggatcccatggtttgtagaagagaa
acgactcatgaaagttatccactggcctccacacgcacatcatagcatgc
acacacccgtactcatacatcacggacatacatggacatatacacacaat
gatactaccattaagaaactttttaatagccgggcgtagtggcgcacacc
tttaatcccagcactcgggaggcaaaggcaggtggatttctgagttcgag
gccagcctggtctacagagtgagttcccggacagccagggctacacagag
aaaccctgtctcgaaaaaccaaaaatgaaaagaaaaacgaaaaaaaaaaa
aaagaaactttttaattaaaattaattaaattacattaaatattttaaat
atttaacaggatagttataatccctgcatttgtgctctaggcacatcaaa
atataatcagcctctaatgaggaagagggtgtgatcagtgtttattgctg
atactataaacctggtcaaaaacccatgactgcagaggtcaaaggctcta
ggaggcatctggttgttttggtaaatggaaaactgttataccattcctct
gtctccctccttccctcccttccttcttctcttttttcctttctgaataa
ggtctttccaggcaggggtggttcatgcctttaactccagcacttaagaa
gcagaggcaaatggatgcacatgggctagcctgatctacagttagagttc
caggatagctagggctacacagggaaaacctgtctcaaaaaagcaaagaa
agaaaaggtctcacttcgaagccttaggcctccctgtatagactagtcta
gccttgaactaactgtttctacatcagtctgtttctgcatcccaagagct
gagattaaaagcatataccaccacacccagccagagtaccctgtaaatgt
gtatgcttatactcatagattagtattgctcttaaccttgggcccaggag
gcttcttgtttaacaatggacagcagttaatgcaaagaatcatagcctga
tcaaagcgctgcgaattagtgactctggggtatcagccctacctaaactg
gatggagatttacatacgttatatacatacctacattacctacctacctt
tatatacacccaccacatacagcatcaggccggagcacacattagagatt
ggaaccactaagaaaggctaagtgggta
gaattccagggtgaccagatgacacagagaaaacatgccccaaacaaaca
aacaaacaaacaaaccccacaaaaatgtatttcttggaaaactagtaagt
tgggcttttacaaatggtctactaggtcgtcatatttatctggattttat
atataatcattgagatgagggaataaaacctgatgtggaaactgttgtca
aatgtgaccttttcggtgtgactgtcctacaagccattacctaagtgtca
ggtgcactagtccacaggctggagagcgtggcacactggtgccatatgtt
tgagtcccttagagataattatccttgtatagaaattaatgccaatatta
cactcgttacaatctcctccaggagattgttttcaaatctttttctttta
cattttaagagaacctttgtatgtgagtgcctagtcccgtgtttatatac
cacagcacatatgtgaggttcagagacaactttcaggagttgcctctcgc
ttctctccttccattgtgtgcgttctggggctcaaagtcagagagttaag
ctcagtggtaagccctcagccactgagccgtcgccatgtcctagagatgt
ttcaagtgtgttgctttggtcacaagaaaaaccttgatgccacggaccgg
tcccagtcggcctccctcaatccgcggaaaaaatgtcagggttcccatta
caggtaggcatggagttggcgagaaaagggtgacagacaagcacacaggg
agtgctgcatctggatgtaaccaagtgaacaccagtcttatctaatagag
aaaacaaaggagtaggtgtcacagcaggcaaggtatattgaagtatcaga
cacaaaacagaggaatgccttcaaagtactgacaggaaccaggtaatgtt
tacagtaaagataaacagccctgcctagagtcagctaatgacaggtaagg
atttcacaccctagtcacaatttatgctactcctttgagccttgtgaaag
gctagcacagggggttctgctctagcagacctctcatgaataatgcaaca
cacacccccctttcctcctaggcctggtaaatactgcaattgagagtaac
tgcctatttttttaagatctgtaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155276145_155277278
seq2: B6Ng01-305H06.g_67_1193

seq1  GAATTCCAGGGTGACCAGATGACACAGAGAAAACATGCCCCAAACAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTGACCAGATGACACAGAGAAAACATGCCCCAAACAAACA  50

seq1  AACAAACAAACAAACCCCACAAAAATGTATTTCTTGGAAAACTAGTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACCCCACAAAAATGTATTTCTTGGAAAACTAGTAAGT  100

seq1  TGGGCTTTTACAAATGGTCTACTAGGTCGTCATATTTATCTGGATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTTACAAATGGTCTACTAGGTCGTCATATTTATCTGGATTTTAT  150

seq1  ATATAATCATTGAGATGAGGGAATAAAACCTGATGTGGAAACTGTTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCATTGAGATGAGGGAATAAAACCTGATGTGGAAACTGTTGTCA  200

seq1  AATGTGACCTTTTCGGTGTGACTGTCCTACAAGCCATTACCTAAGTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACCTTTTCGGTGTGACTGTCCTACAAGCCATTACCTAAGTGTCA  250

seq1  GGTGCACTAGTCCACAGGCTGGAGAGCGTGGCACACTGGTGCCATATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACTAGTCCACAGGCTGGAGAGCGTGGCACACTGGTGCCATATGTT  300

seq1  TGAGTCCCTTAGAGATAATTATCCTTGTATAGAAATTAATGCCAATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTTAGAGATAATTATCCTTGTATAGAAATTAATGCCAATATTA  350

seq1  CACTCGTTACAATCTCCTCCAGGAGATTGTTTTCAAATCTTTTTCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGTTACAATCTCCTCCAGGAGATTGTTTTCAAATCTTTTTCTTTTA  400

seq1  CATTTTAAGAGAACCTTTGTATGTGAGTGCCTAGTCCCGTGTTTATATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGAGAACCTTTGTATGTGAGTGCCTAGTCCCGTGTTTATATAC  450

seq1  CACAGCACATATGTGAGGTTCAGAGACAACTTTCAGGAGTTGCCTCTCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACATATGTGAGGTTCAGAGACAACTTTCAGGAGTTGCCTCTCGC  500

seq1  TTCTCTCCTTCCATTGTGTGCGTTCTGGGGCTCAAAGTCAGAGAGTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTTCCATTGTGTGCGTTCTGGGGCTCAAAGTCAGAGAGTTAAG  550

seq1  CTCAGTGGTAAGCCCTCAGCCACTGAGCCGTCGCCATGTCCTAGAGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTAAGCCCTCAGCCACTGAGCCGTCGCCATGTCCTAGAGATGT  600

seq1  TTCAAGTGTGTTGCTTTGGTCACAAGAAAAACCTTGATGCCACGGACCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGTGTTGCTTTGGTCACAAGAAAAACCTTGATGCCACGGACCGG  650

seq1  TCCCAGTCGGCCTCCCTCAATCCGCGGAAAAAATGTCAGGGTTCCCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCGGCCTCCCTCAATCCGCGGAAAAAATGTCAGGGTTCCCATTA  700

seq1  CAGGTAGGCATGGAGTTGGCGAGAAAAGGGTGACAGACAAGCACACAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGCATGGAGTTGGCGAGAAAAGGGTGACAGACAAGCACACAGGG  750

seq1  AGTGCTGCATCTGGATGTAACCAAGTGAACACCAGTCTTATCTAATAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGCATCTGGATGTAACCAAGTGAACACCAGTCTTATCTAATAGAG  800

seq1  AAAACAAAGGAGTAGGTGTCACAGCAGGCAAGGTATATTGAAGTATCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGGAGTAGGTGTCACAGCAGGCAAGGTATATTGAAGTATCAGA  850

seq1  CACAAAACAGAGGAATGCCTTCAAAGTACTGACAGGAACCAGGTAATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAACAGAGGAATGCCTTCAAAGTACTGACAGGAACCAGGTAATGTT  900

seq1  TACAGTAAAGATAAAACAGCCCTGCCTAGAGTCAGCTAATGACAGGTAAG  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAAGAT-AAACAGCCCTGCCTAGAGTCAGCTAATGACAGGTAAG  949

seq1  GATTTCACACCCTAGTCACAATTTATGCTACTCCTTTGAGCCTTGTGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACACCCTAGTCACAATTTATGCTACTCCTTTGAGCCTTGTGAAA  999

seq1  -GCTAGCACCAGGGGGTTCTGCTCTAGCAGACCTTCTCATGAATAATGCA  1049
       ||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  GGCTAGCA-CAGGGGGTTCTGCTCTAGCAGACC-TCTCATGAATAATGCA  1047

seq1  ACAACACAACCCCCCTTTCTCCTAGGCCTTGGTAAATACTTGCATATGAG  1099
      || ||||| ||||| || |||||||||| |||||||||| ||||  ||||
seq2  AC-ACACACCCCCCTTTCCTCCTAGGCC-TGGTAAATAC-TGCAATTGAG  1094

seq1  AGTAACTTGGCTATTTTTTTAAGTATCTGTAGGGA  1134
      |||||| || ||||||||||||| |||||||||||
seq2  AGTAAC-TGCCTATTTTTTTAAG-ATCTGTAGGGA  1127